JAL-2360 structure viewers now using ColourMenuHelper, obsolete methods
authorgmungoc <g.m.carstairs@dundee.ac.uk>
Thu, 22 Dec 2016 13:12:33 +0000 (13:12 +0000)
committergmungoc <g.m.carstairs@dundee.ac.uk>
Thu, 22 Dec 2016 13:12:33 +0000 (13:12 +0000)
commitf831ddf7f52d6c4a1918e87d94877b22bd322648
tree42931adaae67e485fcdf49e12e835d60be585ad7
parent94751f42fae76e075240eeac0c708abbc8cf9253
JAL-2360 structure viewers now using ColourMenuHelper, obsolete methods
and fields removed, more methods pulled up
22 files changed:
src/jalview/appletgui/AppletJmol.java
src/jalview/ext/jmol/JalviewJmolBinding.java
src/jalview/ext/rbvi/chimera/JalviewChimeraBinding.java
src/jalview/gui/AlignFrame.java
src/jalview/gui/AppJmol.java
src/jalview/gui/ChimeraViewFrame.java
src/jalview/gui/ColourMenuHelper.java
src/jalview/gui/JalviewChimeraBindingModel.java
src/jalview/gui/PopupMenu.java
src/jalview/gui/StructureViewerBase.java
src/jalview/jbgui/GStructureViewer.java
src/jalview/schemes/AnnotationColourGradient.java
src/jalview/schemes/Blosum62ColourScheme.java
src/jalview/schemes/ClustalxColourScheme.java
src/jalview/schemes/ColourSchemeI.java
src/jalview/schemes/CovariationColourScheme.java
src/jalview/schemes/PIDColourScheme.java
src/jalview/schemes/RNAHelicesColour.java
src/jalview/schemes/ResidueColourScheme.java
src/jalview/schemes/TCoffeeColourScheme.java
src/jalview/structures/models/AAStructureBindingModel.java
test/jalview/structures/models/AAStructureBindingModelTest.java