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updated version to 2.6.1
author
jprocter
<Jim Procter>
Fri, 12 Nov 2010 16:33:10 +0000
(16:33 +0000)
committer
jprocter
<Jim Procter>
Fri, 12 Nov 2010 16:33:10 +0000
(16:33 +0000)
693 files changed:
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diff --git
a/.externalToolBuilders/Jalview Release indices [Builder].launch
b/.externalToolBuilders/Jalview Release indices [Builder].launch
index
57994d7
..
2677888
100644
(file)
--- a/
.externalToolBuilders/Jalview Release indices [Builder].launch
+++ b/
.externalToolBuilders/Jalview Release indices [Builder].launch
@@
-4,6
+4,7
@@
<stringAttribute key="org.eclipse.ant.ui.ATTR_ANT_MANUAL_TARGETS" value="buildindices,"/>
<booleanAttribute key="org.eclipse.ant.ui.ATTR_TARGETS_UPDATED" value="true"/>
<booleanAttribute key="org.eclipse.ant.ui.DEFAULT_VM_INSTALL" value="false"/>
<stringAttribute key="org.eclipse.ant.ui.ATTR_ANT_MANUAL_TARGETS" value="buildindices,"/>
<booleanAttribute key="org.eclipse.ant.ui.ATTR_TARGETS_UPDATED" value="true"/>
<booleanAttribute key="org.eclipse.ant.ui.DEFAULT_VM_INSTALL" value="false"/>
+<stringAttribute key="org.eclipse.debug.core.ATTR_REFRESH_SCOPE" value="${project}"/>
<listAttribute key="org.eclipse.debug.core.MAPPED_RESOURCE_PATHS">
<listEntry value="/jalview/build.xml"/>
</listAttribute>
<listAttribute key="org.eclipse.debug.core.MAPPED_RESOURCE_PATHS">
<listEntry value="/jalview/build.xml"/>
</listAttribute>
diff --git
a/RELEASE
b/RELEASE
index
d1c71c2
..
8bd893d
100644
(file)
--- a/
RELEASE
+++ b/
RELEASE
@@
-1,3
+1,3
@@
jalview.release=-r Release_2_6_Branch
\r
jalview.release=-r Release_2_6_Branch
\r
-jalview.version=2.6
\r
+jalview.version=2.6.1
\r
\r
\r
diff --git
a/build.xml
b/build.xml
index
60c442f
..
04fd2c6
100755
(executable)
--- a/
build.xml
+++ b/
build.xml
@@
-1,6
+1,6
@@
<?xml version="1.0"?>
<!--
<?xml version="1.0"?>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/doc/AddingGroovySupport.html
b/doc/AddingGroovySupport.html
index
1487b1c
..
d698849
100644
(file)
--- a/
doc/AddingGroovySupport.html
+++ b/
doc/AddingGroovySupport.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/doc/building.html
b/doc/building.html
index
fd09167
..
6803c7e
100755
(executable)
--- a/
doc/building.html
+++ b/
doc/building.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/doc/developing.html
b/doc/developing.html
index
dcda08c
..
ca3264d
100644
(file)
--- a/
doc/developing.html
+++ b/
doc/developing.html
@@
-1,6
+1,6
@@
<!DOCTYPE html SYSTEM "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
\r
<!--
\r
<!DOCTYPE html SYSTEM "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
\r
<!--
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/doc/index.html
b/doc/index.html
index
12824eb
..
4706ffc
100644
(file)
--- a/
doc/index.html
+++ b/
doc/index.html
@@
-1,6
+1,6
@@
<!DOCTYPE html SYSTEM "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
\r
<!--
\r
<!DOCTYPE html SYSTEM "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
\r
<!--
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/doc/newdmobj.html
b/doc/newdmobj.html
index
1c0fdd4
..
4d2d6d6
100644
(file)
--- a/
doc/newdmobj.html
+++ b/
doc/newdmobj.html
@@
-1,6
+1,6
@@
<html>
\r
<!--
\r
<html>
\r
<!--
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/help/helpTOC.xml
b/help/helpTOC.xml
index
d416dfa
..
3e41ba3
100755
(executable)
--- a/
help/helpTOC.xml
+++ b/
help/helpTOC.xml
@@
-1,6
+1,6
@@
<?xml version="1.0" encoding="ISO-8859-1" ?>
<!--
<?xml version="1.0" encoding="ISO-8859-1" ?>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/calculations/consensus.html
b/help/html/calculations/consensus.html
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..
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--- a/
help/html/calculations/consensus.html
+++ b/
help/html/calculations/consensus.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/calculations/conservation.html
b/help/html/calculations/conservation.html
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help/html/calculations/conservation.html
+++ b/
help/html/calculations/conservation.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/calculations/pairwise.html
b/help/html/calculations/pairwise.html
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+++ b/
help/html/calculations/pairwise.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/calculations/pca.html
b/help/html/calculations/pca.html
index
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..
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--- a/
help/html/calculations/pca.html
+++ b/
help/html/calculations/pca.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/calculations/quality.html
b/help/html/calculations/quality.html
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..
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--- a/
help/html/calculations/quality.html
+++ b/
help/html/calculations/quality.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/calculations/recoverInputdata.html
b/help/html/calculations/recoverInputdata.html
index
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--- a/
help/html/calculations/recoverInputdata.html
+++ b/
help/html/calculations/recoverInputdata.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/calculations/redundancy.html
b/help/html/calculations/redundancy.html
index
7effbe5
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(executable)
--- a/
help/html/calculations/redundancy.html
+++ b/
help/html/calculations/redundancy.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/calculations/sorting.html
b/help/html/calculations/sorting.html
index
13c3ff9
..
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(executable)
--- a/
help/html/calculations/sorting.html
+++ b/
help/html/calculations/sorting.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/calculations/tree.html
b/help/html/calculations/tree.html
index
0e9ba3e
..
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(executable)
--- a/
help/html/calculations/tree.html
+++ b/
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@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/calculations/treeviewer.html
b/help/html/calculations/treeviewer.html
index
67a92c4
..
32db2ce
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(executable)
--- a/
help/html/calculations/treeviewer.html
+++ b/
help/html/calculations/treeviewer.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/colourSchemes/abovePID.html
b/help/html/colourSchemes/abovePID.html
index
fb4e878
..
75ae927
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(executable)
--- a/
help/html/colourSchemes/abovePID.html
+++ b/
help/html/colourSchemes/abovePID.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/colourSchemes/annotationColouring.html
b/help/html/colourSchemes/annotationColouring.html
index
360ec41
..
3db00dd
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(executable)
--- a/
help/html/colourSchemes/annotationColouring.html
+++ b/
help/html/colourSchemes/annotationColouring.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/colourSchemes/blosum.html
b/help/html/colourSchemes/blosum.html
index
ec38cd8
..
5f4231e
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(executable)
--- a/
help/html/colourSchemes/blosum.html
+++ b/
help/html/colourSchemes/blosum.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/colourSchemes/buried.html
b/help/html/colourSchemes/buried.html
index
176b7fe
..
2a91baf
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(executable)
--- a/
help/html/colourSchemes/buried.html
+++ b/
help/html/colourSchemes/buried.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/colourSchemes/clustal.html
b/help/html/colourSchemes/clustal.html
index
ecca772
..
0e57626
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(executable)
--- a/
help/html/colourSchemes/clustal.html
+++ b/
help/html/colourSchemes/clustal.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/colourSchemes/conservation.html
b/help/html/colourSchemes/conservation.html
index
95d9f83
..
1affe45
100755
(executable)
--- a/
help/html/colourSchemes/conservation.html
+++ b/
help/html/colourSchemes/conservation.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/colourSchemes/helix.html
b/help/html/colourSchemes/helix.html
index
111eac4
..
9013253
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(executable)
--- a/
help/html/colourSchemes/helix.html
+++ b/
help/html/colourSchemes/helix.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/colourSchemes/hydrophobic.html
b/help/html/colourSchemes/hydrophobic.html
index
619bc4b
..
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(executable)
--- a/
help/html/colourSchemes/hydrophobic.html
+++ b/
help/html/colourSchemes/hydrophobic.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/colourSchemes/index.html
b/help/html/colourSchemes/index.html
index
7aecc23
..
79a6012
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(executable)
--- a/
help/html/colourSchemes/index.html
+++ b/
help/html/colourSchemes/index.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/colourSchemes/nucleotide.html
b/help/html/colourSchemes/nucleotide.html
index
4735bc4
..
8e2aa8b
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(executable)
--- a/
help/html/colourSchemes/nucleotide.html
+++ b/
help/html/colourSchemes/nucleotide.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/colourSchemes/pid.html
b/help/html/colourSchemes/pid.html
index
05b464c
..
c2a7b9f
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(executable)
--- a/
help/html/colourSchemes/pid.html
+++ b/
help/html/colourSchemes/pid.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/colourSchemes/strand.html
b/help/html/colourSchemes/strand.html
index
a5842d8
..
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(executable)
--- a/
help/html/colourSchemes/strand.html
+++ b/
help/html/colourSchemes/strand.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/colourSchemes/taylor.html
b/help/html/colourSchemes/taylor.html
index
605e25b
..
9202c85
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(executable)
--- a/
help/html/colourSchemes/taylor.html
+++ b/
help/html/colourSchemes/taylor.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/colourSchemes/textcolour.html
b/help/html/colourSchemes/textcolour.html
index
a56d8e6
..
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(file)
--- a/
help/html/colourSchemes/textcolour.html
+++ b/
help/html/colourSchemes/textcolour.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/colourSchemes/turn.html
b/help/html/colourSchemes/turn.html
index
3bacbc9
..
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(executable)
--- a/
help/html/colourSchemes/turn.html
+++ b/
help/html/colourSchemes/turn.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/colourSchemes/user.html
b/help/html/colourSchemes/user.html
index
2fc26e3
..
9617bee
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(executable)
--- a/
help/html/colourSchemes/user.html
+++ b/
help/html/colourSchemes/user.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/colourSchemes/zappo.html
b/help/html/colourSchemes/zappo.html
index
0b27f85
..
743ccb2
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(executable)
--- a/
help/html/colourSchemes/zappo.html
+++ b/
help/html/colourSchemes/zappo.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/editing/index.html
b/help/html/editing/index.html
index
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..
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(executable)
--- a/
help/html/editing/index.html
+++ b/
help/html/editing/index.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/features/annotation.html
b/help/html/features/annotation.html
index
8d272af
..
7e0d23b
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(executable)
--- a/
help/html/features/annotation.html
+++ b/
help/html/features/annotation.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/features/annotationsFormat.html
b/help/html/features/annotationsFormat.html
index
9beaa7c
..
38d17e2
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(executable)
--- a/
help/html/features/annotationsFormat.html
+++ b/
help/html/features/annotationsFormat.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/features/clarguments.html
b/help/html/features/clarguments.html
index
c8a594a
..
9ca64a6
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(file)
--- a/
help/html/features/clarguments.html
+++ b/
help/html/features/clarguments.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
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*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/features/codingfeatures.html
b/help/html/features/codingfeatures.html
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..
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--- a/
help/html/features/codingfeatures.html
+++ b/
help/html/features/codingfeatures.html
@@
-1,6
+1,6
@@
<html>
\r
<!--
\r
<html>
\r
<!--
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
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\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/help/html/features/commandline.html
b/help/html/features/commandline.html
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--- a/
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+++ b/
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@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
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*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/features/creatinFeatures.html
b/help/html/features/creatinFeatures.html
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--- a/
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+++ b/
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@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
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*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/features/cursorMode.html
b/help/html/features/cursorMode.html
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--- a/
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+++ b/
help/html/features/cursorMode.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
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*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/features/dasfeatures.html
b/help/html/features/dasfeatures.html
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--- a/
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+++ b/
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@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
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*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/features/dassettings.html
b/help/html/features/dassettings.html
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--- a/
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+++ b/
help/html/features/dassettings.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
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*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/features/editingFeatures.html
b/help/html/features/editingFeatures.html
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--- a/
help/html/features/editingFeatures.html
+++ b/
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@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
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*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/features/featuresFormat.html
b/help/html/features/featuresFormat.html
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--- a/
help/html/features/featuresFormat.html
+++ b/
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@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
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*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/features/featureschemes.html
b/help/html/features/featureschemes.html
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..
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(file)
--- a/
help/html/features/featureschemes.html
+++ b/
help/html/features/featureschemes.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
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*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/features/featuresettings.html
b/help/html/features/featuresettings.html
index
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..
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(executable)
--- a/
help/html/features/featuresettings.html
+++ b/
help/html/features/featuresettings.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
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*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/features/groovy.html
b/help/html/features/groovy.html
index
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..
d9aa13f
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(file)
--- a/
help/html/features/groovy.html
+++ b/
help/html/features/groovy.html
@@
-1,6
+1,6
@@
<html>
\r
<!--
\r
<html>
\r
<!--
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
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\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/help/html/features/hiddenRegions.html
b/help/html/features/hiddenRegions.html
index
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(file)
--- a/
help/html/features/hiddenRegions.html
+++ b/
help/html/features/hiddenRegions.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
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*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/features/jalarchive.html
b/help/html/features/jalarchive.html
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(executable)
--- a/
help/html/features/jalarchive.html
+++ b/
help/html/features/jalarchive.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
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*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/features/jmol.html
b/help/html/features/jmol.html
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..
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(file)
--- a/
help/html/features/jmol.html
+++ b/
help/html/features/jmol.html
@@
-1,6
+1,6
@@
<html>
\r
<!--
\r
<html>
\r
<!--
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
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\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/help/html/features/multipleViews.html
b/help/html/features/multipleViews.html
index
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(file)
--- a/
help/html/features/multipleViews.html
+++ b/
help/html/features/multipleViews.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
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*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/features/newkeystrokes.html
b/help/html/features/newkeystrokes.html
index
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..
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(file)
--- a/
help/html/features/newkeystrokes.html
+++ b/
help/html/features/newkeystrokes.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
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*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/features/overview.html
b/help/html/features/overview.html
index
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..
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(executable)
--- a/
help/html/features/overview.html
+++ b/
help/html/features/overview.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/features/pdbviewer.html
b/help/html/features/pdbviewer.html
index
67dbc43
..
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(executable)
--- a/
help/html/features/pdbviewer.html
+++ b/
help/html/features/pdbviewer.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/features/preferences.html
b/help/html/features/preferences.html
index
cc45784
..
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(executable)
--- a/
help/html/features/preferences.html
+++ b/
help/html/features/preferences.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/features/search.html
b/help/html/features/search.html
index
956ab12
..
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(executable)
--- a/
help/html/features/search.html
+++ b/
help/html/features/search.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/features/seqfeatures.html
b/help/html/features/seqfeatures.html
index
d9d51ae
..
d47a472
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(executable)
--- a/
help/html/features/seqfeatures.html
+++ b/
help/html/features/seqfeatures.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/features/seqfetch.html
b/help/html/features/seqfetch.html
index
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..
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(executable)
--- a/
help/html/features/seqfetch.html
+++ b/
help/html/features/seqfetch.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/features/seqmappings.html
b/help/html/features/seqmappings.html
index
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..
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(file)
--- a/
help/html/features/seqmappings.html
+++ b/
help/html/features/seqmappings.html
@@
-1,6
+1,6
@@
<html>
\r
<!--
\r
<html>
\r
<!--
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/help/html/features/viewingpdbs.html
b/help/html/features/viewingpdbs.html
index
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(executable)
--- a/
help/html/features/viewingpdbs.html
+++ b/
help/html/features/viewingpdbs.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/features/wrap.html
b/help/html/features/wrap.html
index
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..
bbb15bb
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(executable)
--- a/
help/html/features/wrap.html
+++ b/
help/html/features/wrap.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/index.html
b/help/html/index.html
index
676af1a
..
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(executable)
--- a/
help/html/index.html
+++ b/
help/html/index.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/io/export.html
b/help/html/io/export.html
index
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..
bd0f708
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(executable)
--- a/
help/html/io/export.html
+++ b/
help/html/io/export.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/io/fileformats.html
b/help/html/io/fileformats.html
index
95a6d71
..
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(executable)
--- a/
help/html/io/fileformats.html
+++ b/
help/html/io/fileformats.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/io/index.html
b/help/html/io/index.html
index
cf7dbfb
..
0cadedc
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(executable)
--- a/
help/html/io/index.html
+++ b/
help/html/io/index.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/io/modellerpir.html
b/help/html/io/modellerpir.html
index
c5839ad
..
143d2e4
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(executable)
--- a/
help/html/io/modellerpir.html
+++ b/
help/html/io/modellerpir.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/jalviewjnlp.html
b/help/html/jalviewjnlp.html
index
f821c23
..
cda57ea
100755
(executable)
--- a/
help/html/jalviewjnlp.html
+++ b/
help/html/jalviewjnlp.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/keys.html
b/help/html/keys.html
index
3787710
..
4404da4
100755
(executable)
--- a/
help/html/keys.html
+++ b/
help/html/keys.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/memory.html
b/help/html/memory.html
index
ed005bd
..
b6cca1b
100755
(executable)
--- a/
help/html/memory.html
+++ b/
help/html/memory.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/menus/alignmentMenu.html
b/help/html/menus/alignmentMenu.html
index
06384f6
..
8156e93
100755
(executable)
--- a/
help/html/menus/alignmentMenu.html
+++ b/
help/html/menus/alignmentMenu.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/menus/alwannotations.html
b/help/html/menus/alwannotations.html
index
89a8286
..
b604c89
100755
(executable)
--- a/
help/html/menus/alwannotations.html
+++ b/
help/html/menus/alwannotations.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/menus/alwcalculate.html
b/help/html/menus/alwcalculate.html
index
451fb09
..
85ec95c
100755
(executable)
--- a/
help/html/menus/alwcalculate.html
+++ b/
help/html/menus/alwcalculate.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/menus/alwcolour.html
b/help/html/menus/alwcolour.html
index
7f4f317
..
10ec9c7
100755
(executable)
--- a/
help/html/menus/alwcolour.html
+++ b/
help/html/menus/alwcolour.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/menus/alwedit.html
b/help/html/menus/alwedit.html
index
d010c6c
..
9710de1
100755
(executable)
--- a/
help/html/menus/alwedit.html
+++ b/
help/html/menus/alwedit.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/menus/alwfile.html
b/help/html/menus/alwfile.html
index
c300cfb
..
fd2ebe5
100755
(executable)
--- a/
help/html/menus/alwfile.html
+++ b/
help/html/menus/alwfile.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/menus/alwformat.html
b/help/html/menus/alwformat.html
index
98a1abe
..
d7e8908
100644
(file)
--- a/
help/html/menus/alwformat.html
+++ b/
help/html/menus/alwformat.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/menus/alwselect.html
b/help/html/menus/alwselect.html
index
b84733a
..
31809a2
100644
(file)
--- a/
help/html/menus/alwselect.html
+++ b/
help/html/menus/alwselect.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/menus/alwview.html
b/help/html/menus/alwview.html
index
46df611
..
75e3904
100755
(executable)
--- a/
help/html/menus/alwview.html
+++ b/
help/html/menus/alwview.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/menus/desktopMenu.html
b/help/html/menus/desktopMenu.html
index
5b06f55
..
e108ded
100755
(executable)
--- a/
help/html/menus/desktopMenu.html
+++ b/
help/html/menus/desktopMenu.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/menus/index.html
b/help/html/menus/index.html
index
f423b47
..
fa2b1a5
100755
(executable)
--- a/
help/html/menus/index.html
+++ b/
help/html/menus/index.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/menus/popupMenu.html
b/help/html/menus/popupMenu.html
index
61063ed
..
4f66696
100755
(executable)
--- a/
help/html/menus/popupMenu.html
+++ b/
help/html/menus/popupMenu.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/menus/wsmenu.html
b/help/html/menus/wsmenu.html
index
8c85b93
..
bac5a96
100755
(executable)
--- a/
help/html/menus/wsmenu.html
+++ b/
help/html/menus/wsmenu.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/misc/aaproperties.html
b/help/html/misc/aaproperties.html
index
09e0e0a
..
2a4266a
100755
(executable)
--- a/
help/html/misc/aaproperties.html
+++ b/
help/html/misc/aaproperties.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/misc/aminoAcids.html
b/help/html/misc/aminoAcids.html
index
3a4cdf1
..
7b7e6c4
100755
(executable)
--- a/
help/html/misc/aminoAcids.html
+++ b/
help/html/misc/aminoAcids.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/misc/geneticCode.html
b/help/html/misc/geneticCode.html
index
07922cf
..
967b0ed
100755
(executable)
--- a/
help/html/misc/geneticCode.html
+++ b/
help/html/misc/geneticCode.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/privacy.html
b/help/html/privacy.html
index
01ad39c
..
f46b528
100644
(file)
--- a/
help/html/privacy.html
+++ b/
help/html/privacy.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/releases.html
b/help/html/releases.html
index
6869403
..
e18c7a5
100755
(executable)
--- a/
help/html/releases.html
+++ b/
help/html/releases.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/vamsas/index.html
b/help/html/vamsas/index.html
index
013e0ca
..
e91d114
100644
(file)
--- a/
help/html/vamsas/index.html
+++ b/
help/html/vamsas/index.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/webServices/JABAWS.html
b/help/html/webServices/JABAWS.html
index
e54d5dd
..
867299a
100644
(file)
--- a/
help/html/webServices/JABAWS.html
+++ b/
help/html/webServices/JABAWS.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/webServices/clustalw.html
b/help/html/webServices/clustalw.html
index
120a186
..
81ccc4e
100755
(executable)
--- a/
help/html/webServices/clustalw.html
+++ b/
help/html/webServices/clustalw.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/webServices/dbreffetcher.html
b/help/html/webServices/dbreffetcher.html
index
23d6991
..
1a03352
100644
(file)
--- a/
help/html/webServices/dbreffetcher.html
+++ b/
help/html/webServices/dbreffetcher.html
@@
-1,6
+1,6
@@
<!DOCTYPE html SYSTEM "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
\r
<!--
\r
<!DOCTYPE html SYSTEM "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
\r
<!--
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/help/html/webServices/index.html
b/help/html/webServices/index.html
index
a12d7b3
..
939db64
100755
(executable)
--- a/
help/html/webServices/index.html
+++ b/
help/html/webServices/index.html
@@
-1,6
+1,6
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/webServices/jnet.html
b/help/html/webServices/jnet.html
index
3537554
..
79320f0
100755
(executable)
--- a/
help/html/webServices/jnet.html
+++ b/
help/html/webServices/jnet.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/webServices/mafft.html
b/help/html/webServices/mafft.html
index
d3dd142
..
052e565
100644
(file)
--- a/
help/html/webServices/mafft.html
+++ b/
help/html/webServices/mafft.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/webServices/msaclient.html
b/help/html/webServices/msaclient.html
index
a203849
..
0d413fc
100644
(file)
--- a/
help/html/webServices/msaclient.html
+++ b/
help/html/webServices/msaclient.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/webServices/muscle.html
b/help/html/webServices/muscle.html
index
04fe696
..
1a3de9f
100755
(executable)
--- a/
help/html/webServices/muscle.html
+++ b/
help/html/webServices/muscle.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/webServices/urllinks.html
b/help/html/webServices/urllinks.html
index
649cc67
..
842cc90
100644
(file)
--- a/
help/html/webServices/urllinks.html
+++ b/
help/html/webServices/urllinks.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/webServices/webServicesParams.html
b/help/html/webServices/webServicesParams.html
index
714dd5c
..
3bec481
100644
(file)
--- a/
help/html/webServices/webServicesParams.html
+++ b/
help/html/webServices/webServicesParams.html
@@
-1,6
+1,6
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/webServices/webServicesPrefs.html
b/help/html/webServices/webServicesPrefs.html
index
a581761
..
2d5d3ee
100644
(file)
--- a/
help/html/webServices/webServicesPrefs.html
+++ b/
help/html/webServices/webServicesPrefs.html
@@
-1,6
+1,6
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/help/html/whatsNew.html
b/help/html/whatsNew.html
index
22db13f
..
e6ac442
100755
(executable)
--- a/
help/html/whatsNew.html
+++ b/
help/html/whatsNew.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/jalview-jalopy.xml
b/jalview-jalopy.xml
index
7f82e0c
..
82a7563
100755
(executable)
--- a/
jalview-jalopy.xml
+++ b/
jalview-jalopy.xml
@@
-1,6
+1,6
@@
<!------------------------------------------------------------------------------
<!--
<!------------------------------------------------------------------------------
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/resources/embl_mapping.xml
b/resources/embl_mapping.xml
index
c7b2538
..
dc7f0cb
100644
(file)
--- a/
resources/embl_mapping.xml
+++ b/
resources/embl_mapping.xml
@@
-1,6
+1,6
@@
<?xml version="1.0"?>
\r
<!--
\r
<?xml version="1.0"?>
\r
<!--
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/resources/uniprot_mapping.xml
b/resources/uniprot_mapping.xml
index
5b0141e
..
ec03a8d
100755
(executable)
--- a/
resources/uniprot_mapping.xml
+++ b/
resources/uniprot_mapping.xml
@@
-1,6
+1,6
@@
<?xml version="1.0"?>
<!--
<?xml version="1.0"?>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/schemas/JalviewUserColours.xsd
b/schemas/JalviewUserColours.xsd
index
41d1d4a
..
426a3ab
100755
(executable)
--- a/
schemas/JalviewUserColours.xsd
+++ b/
schemas/JalviewUserColours.xsd
@@
-1,6
+1,6
@@
<?xml version="1.0" encoding="UTF-8"?>
<!--
<?xml version="1.0" encoding="UTF-8"?>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/schemas/JalviewWsParamSet.xsd
b/schemas/JalviewWsParamSet.xsd
index
cb87ef6
..
d3b71f9
100644
(file)
--- a/
schemas/JalviewWsParamSet.xsd
+++ b/
schemas/JalviewWsParamSet.xsd
@@
-1,6
+1,6
@@
<?xml version="1.0" encoding="UTF-8"?>
<!--
<?xml version="1.0" encoding="UTF-8"?>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/schemas/castor-mapping.xsd
b/schemas/castor-mapping.xsd
index
d129e7f
..
8d1ea76
100644
(file)
--- a/
schemas/castor-mapping.xsd
+++ b/
schemas/castor-mapping.xsd
@@
-1,6
+1,6
@@
<?xml version="1.0" encoding="UTF-8"?>
\r
<!--
\r
<?xml version="1.0" encoding="UTF-8"?>
\r
<!--
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/schemas/jalview.xsd
b/schemas/jalview.xsd
index
c847b6d
..
5092a49
100755
(executable)
--- a/
schemas/jalview.xsd
+++ b/
schemas/jalview.xsd
@@
-1,6
+1,6
@@
<?xml version="1.0" encoding="UTF-8"?>
<!--
<?xml version="1.0" encoding="UTF-8"?>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/schemas/jalviewJvV1.xsd
b/schemas/jalviewJvV1.xsd
index
a804a8a
..
ac813f9
100644
(file)
--- a/
schemas/jalviewJvV1.xsd
+++ b/
schemas/jalviewJvV1.xsd
@@
-1,6
+1,6
@@
<?xml version="1.0" encoding="UTF-8"?>
\r
<!--
\r
<?xml version="1.0" encoding="UTF-8"?>
\r
<!--
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/schemas/vamsas.xsd
b/schemas/vamsas.xsd
index
ae0feca
..
8e9a064
100755
(executable)
--- a/
schemas/vamsas.xsd
+++ b/
schemas/vamsas.xsd
@@
-1,6
+1,6
@@
<?xml version="1.0" encoding="UTF-8"?>
<!--
<?xml version="1.0" encoding="UTF-8"?>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/schemas/vamsasJvV1.xsd
b/schemas/vamsasJvV1.xsd
index
0284fb6
..
28c9e92
100644
(file)
--- a/
schemas/vamsasJvV1.xsd
+++ b/
schemas/vamsasJvV1.xsd
@@
-1,6
+1,6
@@
<?xml version="1.0" encoding="UTF-8"?>
\r
<!--
\r
<?xml version="1.0" encoding="UTF-8"?>
\r
<!--
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/MCview/AppletPDBCanvas.java
b/src/MCview/AppletPDBCanvas.java
index
9939131
..
c0d2d3f
100755
(executable)
--- a/
src/MCview/AppletPDBCanvas.java
+++ b/
src/MCview/AppletPDBCanvas.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/MCview/AppletPDBViewer.java
b/src/MCview/AppletPDBViewer.java
index
00d8416
..
b37951d
100755
(executable)
--- a/
src/MCview/AppletPDBViewer.java
+++ b/
src/MCview/AppletPDBViewer.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/MCview/Atom.java
b/src/MCview/Atom.java
index
8b160ef
..
635a442
100755
(executable)
--- a/
src/MCview/Atom.java
+++ b/
src/MCview/Atom.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/MCview/Bond.java
b/src/MCview/Bond.java
index
c3a3b5d
..
04885cc
100755
(executable)
--- a/
src/MCview/Bond.java
+++ b/
src/MCview/Bond.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/MCview/MCMatrix.java
b/src/MCview/MCMatrix.java
index
abffac4
..
a74ee6b
100755
(executable)
--- a/
src/MCview/MCMatrix.java
+++ b/
src/MCview/MCMatrix.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/MCview/PDBCanvas.java
b/src/MCview/PDBCanvas.java
index
23de254
..
de233d3
100755
(executable)
--- a/
src/MCview/PDBCanvas.java
+++ b/
src/MCview/PDBCanvas.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/MCview/PDBChain.java
b/src/MCview/PDBChain.java
index
c7eec35
..
c084fa1
100755
(executable)
--- a/
src/MCview/PDBChain.java
+++ b/
src/MCview/PDBChain.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/MCview/PDBViewer.java
b/src/MCview/PDBViewer.java
index
6c3de37
..
1109a49
100755
(executable)
--- a/
src/MCview/PDBViewer.java
+++ b/
src/MCview/PDBViewer.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/MCview/PDBfile.java
b/src/MCview/PDBfile.java
index
c55a519
..
2ddde21
100755
(executable)
--- a/
src/MCview/PDBfile.java
+++ b/
src/MCview/PDBfile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/MCview/Residue.java
b/src/MCview/Residue.java
index
b7639ec
..
a9de79a
100755
(executable)
--- a/
src/MCview/Residue.java
+++ b/
src/MCview/Residue.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/MCview/Zsort.java
b/src/MCview/Zsort.java
index
70913c2
..
9e3275b
100755
(executable)
--- a/
src/MCview/Zsort.java
+++ b/
src/MCview/Zsort.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/ext/vamsas/IRegistry.java
b/src/ext/vamsas/IRegistry.java
index
80f811b
..
45a59ed
100755
(executable)
--- a/
src/ext/vamsas/IRegistry.java
+++ b/
src/ext/vamsas/IRegistry.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/ext/vamsas/IRegistryService.java
b/src/ext/vamsas/IRegistryService.java
index
1f724e0
..
2876d4d
100755
(executable)
--- a/
src/ext/vamsas/IRegistryService.java
+++ b/
src/ext/vamsas/IRegistryService.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/ext/vamsas/IRegistryServiceLocator.java
b/src/ext/vamsas/IRegistryServiceLocator.java
index
1e08074
..
0fe718a
100755
(executable)
--- a/
src/ext/vamsas/IRegistryServiceLocator.java
+++ b/
src/ext/vamsas/IRegistryServiceLocator.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/ext/vamsas/Jpred.java
b/src/ext/vamsas/Jpred.java
index
8438998
..
fa93696
100755
(executable)
--- a/
src/ext/vamsas/Jpred.java
+++ b/
src/ext/vamsas/Jpred.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/ext/vamsas/JpredService.java
b/src/ext/vamsas/JpredService.java
index
fec4186
..
2be65fd
100755
(executable)
--- a/
src/ext/vamsas/JpredService.java
+++ b/
src/ext/vamsas/JpredService.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/ext/vamsas/JpredServiceLocator.java
b/src/ext/vamsas/JpredServiceLocator.java
index
355595c
..
f19320c
100755
(executable)
--- a/
src/ext/vamsas/JpredServiceLocator.java
+++ b/
src/ext/vamsas/JpredServiceLocator.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/ext/vamsas/JpredSoapBindingStub.java
b/src/ext/vamsas/JpredSoapBindingStub.java
index
7c80f57
..
ce7b1c2
100755
(executable)
--- a/
src/ext/vamsas/JpredSoapBindingStub.java
+++ b/
src/ext/vamsas/JpredSoapBindingStub.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/ext/vamsas/MuscleWS.java
b/src/ext/vamsas/MuscleWS.java
index
bf18a1c
..
e6a0a0b
100755
(executable)
--- a/
src/ext/vamsas/MuscleWS.java
+++ b/
src/ext/vamsas/MuscleWS.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/ext/vamsas/MuscleWSService.java
b/src/ext/vamsas/MuscleWSService.java
index
2b51392
..
aede671
100755
(executable)
--- a/
src/ext/vamsas/MuscleWSService.java
+++ b/
src/ext/vamsas/MuscleWSService.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/ext/vamsas/MuscleWSServiceLocator.java
b/src/ext/vamsas/MuscleWSServiceLocator.java
index
8713ef1
..
300d0b1
100755
(executable)
--- a/
src/ext/vamsas/MuscleWSServiceLocator.java
+++ b/
src/ext/vamsas/MuscleWSServiceLocator.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/ext/vamsas/MuscleWSSoapBindingStub.java
b/src/ext/vamsas/MuscleWSSoapBindingStub.java
index
f732060
..
f1362dd
100755
(executable)
--- a/
src/ext/vamsas/MuscleWSSoapBindingStub.java
+++ b/
src/ext/vamsas/MuscleWSSoapBindingStub.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/ext/vamsas/RegistryServiceSoapBindingStub.java
b/src/ext/vamsas/RegistryServiceSoapBindingStub.java
index
7722d99
..
5c8c9d9
100755
(executable)
--- a/
src/ext/vamsas/RegistryServiceSoapBindingStub.java
+++ b/
src/ext/vamsas/RegistryServiceSoapBindingStub.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/ext/vamsas/SeqSearchI.java
b/src/ext/vamsas/SeqSearchI.java
index
91d96c8
..
f28de63
100644
(file)
--- a/
src/ext/vamsas/SeqSearchI.java
+++ b/
src/ext/vamsas/SeqSearchI.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/ext/vamsas/SeqSearchServiceLocator.java
b/src/ext/vamsas/SeqSearchServiceLocator.java
index
0c7bae5
..
9750834
100644
(file)
--- a/
src/ext/vamsas/SeqSearchServiceLocator.java
+++ b/
src/ext/vamsas/SeqSearchServiceLocator.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/ext/vamsas/SeqSearchServiceService.java
b/src/ext/vamsas/SeqSearchServiceService.java
index
9fe0579
..
81527ae
100644
(file)
--- a/
src/ext/vamsas/SeqSearchServiceService.java
+++ b/
src/ext/vamsas/SeqSearchServiceService.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/ext/vamsas/SeqSearchServiceSoapBindingStub.java
b/src/ext/vamsas/SeqSearchServiceSoapBindingStub.java
index
9b918fd
..
11b7131
100644
(file)
--- a/
src/ext/vamsas/SeqSearchServiceSoapBindingStub.java
+++ b/
src/ext/vamsas/SeqSearchServiceSoapBindingStub.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/ext/vamsas/ServiceHandle.java
b/src/ext/vamsas/ServiceHandle.java
index
62a3af5
..
75db8bf
100755
(executable)
--- a/
src/ext/vamsas/ServiceHandle.java
+++ b/
src/ext/vamsas/ServiceHandle.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/ext/vamsas/ServiceHandles.java
b/src/ext/vamsas/ServiceHandles.java
index
e931d44
..
221341b
100755
(executable)
--- a/
src/ext/vamsas/ServiceHandles.java
+++ b/
src/ext/vamsas/ServiceHandles.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/analysis/AAFrequency.java
b/src/jalview/analysis/AAFrequency.java
index
31cb7ad
..
33ee1ba
100755
(executable)
--- a/
src/jalview/analysis/AAFrequency.java
+++ b/
src/jalview/analysis/AAFrequency.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/analysis/AlignSeq.java
b/src/jalview/analysis/AlignSeq.java
index
28c6283
..
4f8de6c
100755
(executable)
--- a/
src/jalview/analysis/AlignSeq.java
+++ b/
src/jalview/analysis/AlignSeq.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/analysis/AlignmentSorter.java
b/src/jalview/analysis/AlignmentSorter.java
index
158fe81
..
b658cc1
100755
(executable)
--- a/
src/jalview/analysis/AlignmentSorter.java
+++ b/
src/jalview/analysis/AlignmentSorter.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/analysis/Conservation.java
b/src/jalview/analysis/Conservation.java
index
b557c5a
..
f34bfd5
100755
(executable)
--- a/
src/jalview/analysis/Conservation.java
+++ b/
src/jalview/analysis/Conservation.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/analysis/CrossRef.java
b/src/jalview/analysis/CrossRef.java
index
8682e8a
..
555c708
100644
(file)
--- a/
src/jalview/analysis/CrossRef.java
+++ b/
src/jalview/analysis/CrossRef.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/analysis/Dna.java
b/src/jalview/analysis/Dna.java
index
482c54a
..
bb72baf
100644
(file)
--- a/
src/jalview/analysis/Dna.java
+++ b/
src/jalview/analysis/Dna.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/analysis/Finder.java
b/src/jalview/analysis/Finder.java
index
41d3185
..
a0680dd
100644
(file)
--- a/
src/jalview/analysis/Finder.java
+++ b/
src/jalview/analysis/Finder.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/analysis/Grouping.java
b/src/jalview/analysis/Grouping.java
index
2cb4753
..
16f5076
100644
(file)
--- a/
src/jalview/analysis/Grouping.java
+++ b/
src/jalview/analysis/Grouping.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/analysis/NJTree.java
b/src/jalview/analysis/NJTree.java
index
ee782e7
..
c140237
100755
(executable)
--- a/
src/jalview/analysis/NJTree.java
+++ b/
src/jalview/analysis/NJTree.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/analysis/PCA.java
b/src/jalview/analysis/PCA.java
index
9be0e3c
..
0c02f48
100755
(executable)
--- a/
src/jalview/analysis/PCA.java
+++ b/
src/jalview/analysis/PCA.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/analysis/ParseProperties.java
b/src/jalview/analysis/ParseProperties.java
index
3af6c24
..
a97982b
100644
(file)
--- a/
src/jalview/analysis/ParseProperties.java
+++ b/
src/jalview/analysis/ParseProperties.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/analysis/SeqsetUtils.java
b/src/jalview/analysis/SeqsetUtils.java
index
332f89f
..
a77669d
100755
(executable)
--- a/
src/jalview/analysis/SeqsetUtils.java
+++ b/
src/jalview/analysis/SeqsetUtils.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/analysis/SequenceIdMatcher.java
b/src/jalview/analysis/SequenceIdMatcher.java
index
0046cf5
..
b8d16f0
100755
(executable)
--- a/
src/jalview/analysis/SequenceIdMatcher.java
+++ b/
src/jalview/analysis/SequenceIdMatcher.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/api/FeatureRenderer.java
b/src/jalview/api/FeatureRenderer.java
index
14af09b
..
3909e50
100644
(file)
--- a/
src/jalview/api/FeatureRenderer.java
+++ b/
src/jalview/api/FeatureRenderer.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/api/SequenceRenderer.java
b/src/jalview/api/SequenceRenderer.java
index
37b43b5
..
62c8eea
100644
(file)
--- a/
src/jalview/api/SequenceRenderer.java
+++ b/
src/jalview/api/SequenceRenderer.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/api/SequenceStructureBinding.java
b/src/jalview/api/SequenceStructureBinding.java
index
f4c9345
..
5f9217d
100644
(file)
--- a/
src/jalview/api/SequenceStructureBinding.java
+++ b/
src/jalview/api/SequenceStructureBinding.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/APopupMenu.java
b/src/jalview/appletgui/APopupMenu.java
index
5288fe4
..
f38b6dc
100755
(executable)
--- a/
src/jalview/appletgui/APopupMenu.java
+++ b/
src/jalview/appletgui/APopupMenu.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/AlignFrame.java
b/src/jalview/appletgui/AlignFrame.java
index
9f77772
..
414d333
100755
(executable)
--- a/
src/jalview/appletgui/AlignFrame.java
+++ b/
src/jalview/appletgui/AlignFrame.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/AlignViewport.java
b/src/jalview/appletgui/AlignViewport.java
index
6d6a3e6
..
08337c8
100755
(executable)
--- a/
src/jalview/appletgui/AlignViewport.java
+++ b/
src/jalview/appletgui/AlignViewport.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/AlignmentPanel.java
b/src/jalview/appletgui/AlignmentPanel.java
index
6d4c63b
..
41b80aa
100755
(executable)
--- a/
src/jalview/appletgui/AlignmentPanel.java
+++ b/
src/jalview/appletgui/AlignmentPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/AnnotationColourChooser.java
b/src/jalview/appletgui/AnnotationColourChooser.java
index
41c20bd
..
1d0600c
100755
(executable)
--- a/
src/jalview/appletgui/AnnotationColourChooser.java
+++ b/
src/jalview/appletgui/AnnotationColourChooser.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/AnnotationLabels.java
b/src/jalview/appletgui/AnnotationLabels.java
index
ebc4ebb
..
74eb5de
100755
(executable)
--- a/
src/jalview/appletgui/AnnotationLabels.java
+++ b/
src/jalview/appletgui/AnnotationLabels.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/AnnotationPanel.java
b/src/jalview/appletgui/AnnotationPanel.java
index
c3f17f9
..
6d55b13
100755
(executable)
--- a/
src/jalview/appletgui/AnnotationPanel.java
+++ b/
src/jalview/appletgui/AnnotationPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/AppletJmol.java
b/src/jalview/appletgui/AppletJmol.java
index
42e6f56
..
8f4a355
100644
(file)
--- a/
src/jalview/appletgui/AppletJmol.java
+++ b/
src/jalview/appletgui/AppletJmol.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/AppletJmolBinding.java
b/src/jalview/appletgui/AppletJmolBinding.java
index
009cefd
..
d0a69d8
100644
(file)
--- a/
src/jalview/appletgui/AppletJmolBinding.java
+++ b/
src/jalview/appletgui/AppletJmolBinding.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/CutAndPasteTransfer.java
b/src/jalview/appletgui/CutAndPasteTransfer.java
index
c09784e
..
e6de0df
100755
(executable)
--- a/
src/jalview/appletgui/CutAndPasteTransfer.java
+++ b/
src/jalview/appletgui/CutAndPasteTransfer.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/EditNameDialog.java
b/src/jalview/appletgui/EditNameDialog.java
index
2d6ef56
..
8147266
100644
(file)
--- a/
src/jalview/appletgui/EditNameDialog.java
+++ b/
src/jalview/appletgui/EditNameDialog.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/EmbmenuFrame.java
b/src/jalview/appletgui/EmbmenuFrame.java
index
bfc453a
..
32e3e76
100644
(file)
--- a/
src/jalview/appletgui/EmbmenuFrame.java
+++ b/
src/jalview/appletgui/EmbmenuFrame.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/appletgui/ExtJmol.java
b/src/jalview/appletgui/ExtJmol.java
index
d3dad58
..
69d39e5
100644
(file)
--- a/
src/jalview/appletgui/ExtJmol.java
+++ b/
src/jalview/appletgui/ExtJmol.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/FeatureColourChooser.java
b/src/jalview/appletgui/FeatureColourChooser.java
index
69f667a
..
2de833e
100644
(file)
--- a/
src/jalview/appletgui/FeatureColourChooser.java
+++ b/
src/jalview/appletgui/FeatureColourChooser.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/FeatureRenderer.java
b/src/jalview/appletgui/FeatureRenderer.java
index
de03c03
..
210454a
100755
(executable)
--- a/
src/jalview/appletgui/FeatureRenderer.java
+++ b/
src/jalview/appletgui/FeatureRenderer.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/FeatureSettings.java
b/src/jalview/appletgui/FeatureSettings.java
index
fb8b37c
..
c38d33b
100755
(executable)
--- a/
src/jalview/appletgui/FeatureSettings.java
+++ b/
src/jalview/appletgui/FeatureSettings.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/Finder.java
b/src/jalview/appletgui/Finder.java
index
eef4b62
..
638247a
100755
(executable)
--- a/
src/jalview/appletgui/Finder.java
+++ b/
src/jalview/appletgui/Finder.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/FontChooser.java
b/src/jalview/appletgui/FontChooser.java
index
d4563d9
..
9153e9f
100755
(executable)
--- a/
src/jalview/appletgui/FontChooser.java
+++ b/
src/jalview/appletgui/FontChooser.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/IdCanvas.java
b/src/jalview/appletgui/IdCanvas.java
index
38a1310
..
ece3e94
100755
(executable)
--- a/
src/jalview/appletgui/IdCanvas.java
+++ b/
src/jalview/appletgui/IdCanvas.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/IdPanel.java
b/src/jalview/appletgui/IdPanel.java
index
a7a20ed
..
252c76c
100755
(executable)
--- a/
src/jalview/appletgui/IdPanel.java
+++ b/
src/jalview/appletgui/IdPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/IdwidthAdjuster.java
b/src/jalview/appletgui/IdwidthAdjuster.java
index
a6bbdd3
..
1dc1f6d
100755
(executable)
--- a/
src/jalview/appletgui/IdwidthAdjuster.java
+++ b/
src/jalview/appletgui/IdwidthAdjuster.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/JVDialog.java
b/src/jalview/appletgui/JVDialog.java
index
a08e85c
..
5ef25c3
100644
(file)
--- a/
src/jalview/appletgui/JVDialog.java
+++ b/
src/jalview/appletgui/JVDialog.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/OverviewPanel.java
b/src/jalview/appletgui/OverviewPanel.java
index
d740625
..
6f8fa10
100755
(executable)
--- a/
src/jalview/appletgui/OverviewPanel.java
+++ b/
src/jalview/appletgui/OverviewPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/PCAPanel.java
b/src/jalview/appletgui/PCAPanel.java
index
5d32373
..
e7b5a73
100755
(executable)
--- a/
src/jalview/appletgui/PCAPanel.java
+++ b/
src/jalview/appletgui/PCAPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/PaintRefresher.java
b/src/jalview/appletgui/PaintRefresher.java
index
ab3325b
..
b15c569
100755
(executable)
--- a/
src/jalview/appletgui/PaintRefresher.java
+++ b/
src/jalview/appletgui/PaintRefresher.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/PairwiseAlignPanel.java
b/src/jalview/appletgui/PairwiseAlignPanel.java
index
beec55b
..
0958375
100755
(executable)
--- a/
src/jalview/appletgui/PairwiseAlignPanel.java
+++ b/
src/jalview/appletgui/PairwiseAlignPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/RedundancyPanel.java
b/src/jalview/appletgui/RedundancyPanel.java
index
634c82e
..
2ed10df
100755
(executable)
--- a/
src/jalview/appletgui/RedundancyPanel.java
+++ b/
src/jalview/appletgui/RedundancyPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/RotatableCanvas.java
b/src/jalview/appletgui/RotatableCanvas.java
index
4872aad
..
67bcf70
100755
(executable)
--- a/
src/jalview/appletgui/RotatableCanvas.java
+++ b/
src/jalview/appletgui/RotatableCanvas.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/ScalePanel.java
b/src/jalview/appletgui/ScalePanel.java
index
0971882
..
914ffb7
100755
(executable)
--- a/
src/jalview/appletgui/ScalePanel.java
+++ b/
src/jalview/appletgui/ScalePanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/SeqCanvas.java
b/src/jalview/appletgui/SeqCanvas.java
index
fd9d768
..
cee6cdc
100755
(executable)
--- a/
src/jalview/appletgui/SeqCanvas.java
+++ b/
src/jalview/appletgui/SeqCanvas.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/SeqPanel.java
b/src/jalview/appletgui/SeqPanel.java
index
24f4786
..
1bfca9b
100755
(executable)
--- a/
src/jalview/appletgui/SeqPanel.java
+++ b/
src/jalview/appletgui/SeqPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/SequenceRenderer.java
b/src/jalview/appletgui/SequenceRenderer.java
index
0215e55
..
0489452
100755
(executable)
--- a/
src/jalview/appletgui/SequenceRenderer.java
+++ b/
src/jalview/appletgui/SequenceRenderer.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/SliderPanel.java
b/src/jalview/appletgui/SliderPanel.java
index
2326cae
..
b9ed165
100755
(executable)
--- a/
src/jalview/appletgui/SliderPanel.java
+++ b/
src/jalview/appletgui/SliderPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/Tooltip.java
b/src/jalview/appletgui/Tooltip.java
index
4806ba1
..
840e4b9
100755
(executable)
--- a/
src/jalview/appletgui/Tooltip.java
+++ b/
src/jalview/appletgui/Tooltip.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/appletgui/TreeCanvas.java
b/src/jalview/appletgui/TreeCanvas.java
index
d40ab73
..
8c010a5
100755
(executable)
--- a/
src/jalview/appletgui/TreeCanvas.java
+++ b/
src/jalview/appletgui/TreeCanvas.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/TreePanel.java
b/src/jalview/appletgui/TreePanel.java
index
268fece
..
30eb89a
100755
(executable)
--- a/
src/jalview/appletgui/TreePanel.java
+++ b/
src/jalview/appletgui/TreePanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/UserDefinedColours.java
b/src/jalview/appletgui/UserDefinedColours.java
index
188099a
..
e54983a
100755
(executable)
--- a/
src/jalview/appletgui/UserDefinedColours.java
+++ b/
src/jalview/appletgui/UserDefinedColours.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/bin/Cache.java
b/src/jalview/bin/Cache.java
index
48837ff
..
34f53b1
100755
(executable)
--- a/
src/jalview/bin/Cache.java
+++ b/
src/jalview/bin/Cache.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/bin/Jalview.java
b/src/jalview/bin/Jalview.java
index
39daac6
..
91634af
100755
(executable)
--- a/
src/jalview/bin/Jalview.java
+++ b/
src/jalview/bin/Jalview.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/bin/JalviewLite.java
b/src/jalview/bin/JalviewLite.java
index
6a29ecd
..
090c46a
100755
(executable)
--- a/
src/jalview/bin/JalviewLite.java
+++ b/
src/jalview/bin/JalviewLite.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/bin/JalviewLiteURLRetrieve.java
b/src/jalview/bin/JalviewLiteURLRetrieve.java
index
be952d4
..
5b411fb
100644
(file)
--- a/
src/jalview/bin/JalviewLiteURLRetrieve.java
+++ b/
src/jalview/bin/JalviewLiteURLRetrieve.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/Alignment.java
b/src/jalview/binding/Alignment.java
index
6b1efa8
..
a57f764
100755
(executable)
--- a/
src/jalview/binding/Alignment.java
+++ b/
src/jalview/binding/Alignment.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/Annotation.java
b/src/jalview/binding/Annotation.java
index
87ca721
..
e1ade0c
100755
(executable)
--- a/
src/jalview/binding/Annotation.java
+++ b/
src/jalview/binding/Annotation.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/AnnotationElement.java
b/src/jalview/binding/AnnotationElement.java
index
7814e34
..
3be3371
100755
(executable)
--- a/
src/jalview/binding/AnnotationElement.java
+++ b/
src/jalview/binding/AnnotationElement.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/Colour.java
b/src/jalview/binding/Colour.java
index
b1e7916
..
7856c85
100755
(executable)
--- a/
src/jalview/binding/Colour.java
+++ b/
src/jalview/binding/Colour.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/Feature.java
b/src/jalview/binding/Feature.java
index
cd0c9bd
..
bd7aea8
100755
(executable)
--- a/
src/jalview/binding/Feature.java
+++ b/
src/jalview/binding/Feature.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/FeatureSettings.java
b/src/jalview/binding/FeatureSettings.java
index
5a768c4
..
5269571
100755
(executable)
--- a/
src/jalview/binding/FeatureSettings.java
+++ b/
src/jalview/binding/FeatureSettings.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/Features.java
b/src/jalview/binding/Features.java
index
0d65b0c
..
cbbd311
100755
(executable)
--- a/
src/jalview/binding/Features.java
+++ b/
src/jalview/binding/Features.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/JGroup.java
b/src/jalview/binding/JGroup.java
index
02d9229
..
55bedd0
100755
(executable)
--- a/
src/jalview/binding/JGroup.java
+++ b/
src/jalview/binding/JGroup.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/JSeq.java
b/src/jalview/binding/JSeq.java
index
cbc949a
..
1cea659
100755
(executable)
--- a/
src/jalview/binding/JSeq.java
+++ b/
src/jalview/binding/JSeq.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/JalviewModel.java
b/src/jalview/binding/JalviewModel.java
index
8f12c0c
..
3726b37
100755
(executable)
--- a/
src/jalview/binding/JalviewModel.java
+++ b/
src/jalview/binding/JalviewModel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/JalviewModelSequence.java
b/src/jalview/binding/JalviewModelSequence.java
index
6b056d3
..
874da72
100755
(executable)
--- a/
src/jalview/binding/JalviewModelSequence.java
+++ b/
src/jalview/binding/JalviewModelSequence.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/JalviewUserColours.java
b/src/jalview/binding/JalviewUserColours.java
index
cf575f5
..
ff89d0f
100755
(executable)
--- a/
src/jalview/binding/JalviewUserColours.java
+++ b/
src/jalview/binding/JalviewUserColours.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/Pdbentry.java
b/src/jalview/binding/Pdbentry.java
index
54c678c
..
e6b6837
100755
(executable)
--- a/
src/jalview/binding/Pdbentry.java
+++ b/
src/jalview/binding/Pdbentry.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/PdbentryItem.java
b/src/jalview/binding/PdbentryItem.java
index
7e40e0c
..
f622982
100755
(executable)
--- a/
src/jalview/binding/PdbentryItem.java
+++ b/
src/jalview/binding/PdbentryItem.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/Pdbids.java
b/src/jalview/binding/Pdbids.java
index
4857701
..
453e7c4
100755
(executable)
--- a/
src/jalview/binding/Pdbids.java
+++ b/
src/jalview/binding/Pdbids.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/Property.java
b/src/jalview/binding/Property.java
index
b051b0d
..
adb725c
100755
(executable)
--- a/
src/jalview/binding/Property.java
+++ b/
src/jalview/binding/Property.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/Sequence.java
b/src/jalview/binding/Sequence.java
index
e69fa67
..
d9826f4
100755
(executable)
--- a/
src/jalview/binding/Sequence.java
+++ b/
src/jalview/binding/Sequence.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/SequenceSet.java
b/src/jalview/binding/SequenceSet.java
index
fa6feda
..
943afe2
100755
(executable)
--- a/
src/jalview/binding/SequenceSet.java
+++ b/
src/jalview/binding/SequenceSet.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/SequenceType.java
b/src/jalview/binding/SequenceType.java
index
1b420a0
..
ffed392
100755
(executable)
--- a/
src/jalview/binding/SequenceType.java
+++ b/
src/jalview/binding/SequenceType.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/Setting.java
b/src/jalview/binding/Setting.java
index
a9717e7
..
46ac53d
100755
(executable)
--- a/
src/jalview/binding/Setting.java
+++ b/
src/jalview/binding/Setting.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/Tree.java
b/src/jalview/binding/Tree.java
index
2e62e4a
..
eaedf86
100755
(executable)
--- a/
src/jalview/binding/Tree.java
+++ b/
src/jalview/binding/Tree.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/UserColourScheme.java
b/src/jalview/binding/UserColourScheme.java
index
915881b
..
6c0226c
100755
(executable)
--- a/
src/jalview/binding/UserColourScheme.java
+++ b/
src/jalview/binding/UserColourScheme.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/UserColours.java
b/src/jalview/binding/UserColours.java
index
cf195e7
..
d91c7f5
100755
(executable)
--- a/
src/jalview/binding/UserColours.java
+++ b/
src/jalview/binding/UserColours.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/VAMSAS.java
b/src/jalview/binding/VAMSAS.java
index
d7610d4
..
ce6d0a1
100755
(executable)
--- a/
src/jalview/binding/VAMSAS.java
+++ b/
src/jalview/binding/VAMSAS.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/VamsasModel.java
b/src/jalview/binding/VamsasModel.java
index
2b1bc0e
..
2c8a1c2
100755
(executable)
--- a/
src/jalview/binding/VamsasModel.java
+++ b/
src/jalview/binding/VamsasModel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/Viewport.java
b/src/jalview/binding/Viewport.java
index
ee663c7
..
8a4fd8b
100755
(executable)
--- a/
src/jalview/binding/Viewport.java
+++ b/
src/jalview/binding/Viewport.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/commands/ChangeCaseCommand.java
b/src/jalview/commands/ChangeCaseCommand.java
index
7ba4027
..
e6e87ce
100644
(file)
--- a/
src/jalview/commands/ChangeCaseCommand.java
+++ b/
src/jalview/commands/ChangeCaseCommand.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/commands/CommandI.java
b/src/jalview/commands/CommandI.java
index
7611728
..
8460e15
100644
(file)
--- a/
src/jalview/commands/CommandI.java
+++ b/
src/jalview/commands/CommandI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/commands/EditCommand.java
b/src/jalview/commands/EditCommand.java
index
5310838
..
334f34e
100644
(file)
--- a/
src/jalview/commands/EditCommand.java
+++ b/
src/jalview/commands/EditCommand.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/commands/OrderCommand.java
b/src/jalview/commands/OrderCommand.java
index
bacca28
..
34a3c64
100644
(file)
--- a/
src/jalview/commands/OrderCommand.java
+++ b/
src/jalview/commands/OrderCommand.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/commands/RemoveGapColCommand.java
b/src/jalview/commands/RemoveGapColCommand.java
index
b4331d7
..
8404853
100644
(file)
--- a/
src/jalview/commands/RemoveGapColCommand.java
+++ b/
src/jalview/commands/RemoveGapColCommand.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/commands/RemoveGapsCommand.java
b/src/jalview/commands/RemoveGapsCommand.java
index
9165225
..
3bdd674
100644
(file)
--- a/
src/jalview/commands/RemoveGapsCommand.java
+++ b/
src/jalview/commands/RemoveGapsCommand.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/commands/SlideSequencesCommand.java
b/src/jalview/commands/SlideSequencesCommand.java
index
60ba93d
..
3a2bbd3
100644
(file)
--- a/
src/jalview/commands/SlideSequencesCommand.java
+++ b/
src/jalview/commands/SlideSequencesCommand.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/commands/TrimRegionCommand.java
b/src/jalview/commands/TrimRegionCommand.java
index
2de3539
..
2ad0872
100644
(file)
--- a/
src/jalview/commands/TrimRegionCommand.java
+++ b/
src/jalview/commands/TrimRegionCommand.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/AlignedCodonFrame.java
b/src/jalview/datamodel/AlignedCodonFrame.java
index
207069a
..
8a986fe
100644
(file)
--- a/
src/jalview/datamodel/AlignedCodonFrame.java
+++ b/
src/jalview/datamodel/AlignedCodonFrame.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/datamodel/Alignment.java
b/src/jalview/datamodel/Alignment.java
index
42559c6
..
c69178c
100755
(executable)
--- a/
src/jalview/datamodel/Alignment.java
+++ b/
src/jalview/datamodel/Alignment.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/AlignmentAnnotation.java
b/src/jalview/datamodel/AlignmentAnnotation.java
index
bd5bfcf
..
cff393d
100755
(executable)
--- a/
src/jalview/datamodel/AlignmentAnnotation.java
+++ b/
src/jalview/datamodel/AlignmentAnnotation.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/AlignmentI.java
b/src/jalview/datamodel/AlignmentI.java
index
8b947eb
..
09aa4d0
100755
(executable)
--- a/
src/jalview/datamodel/AlignmentI.java
+++ b/
src/jalview/datamodel/AlignmentI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/AlignmentOrder.java
b/src/jalview/datamodel/AlignmentOrder.java
index
7bf2042
..
e1ddf81
100755
(executable)
--- a/
src/jalview/datamodel/AlignmentOrder.java
+++ b/
src/jalview/datamodel/AlignmentOrder.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/AlignmentView.java
b/src/jalview/datamodel/AlignmentView.java
index
4079c9c
..
5960407
100644
(file)
--- a/
src/jalview/datamodel/AlignmentView.java
+++ b/
src/jalview/datamodel/AlignmentView.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/datamodel/Annotation.java
b/src/jalview/datamodel/Annotation.java
index
762a62c
..
9393ed7
100755
(executable)
--- a/
src/jalview/datamodel/Annotation.java
+++ b/
src/jalview/datamodel/Annotation.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/BinaryNode.java
b/src/jalview/datamodel/BinaryNode.java
index
cae0185
..
673ff69
100755
(executable)
--- a/
src/jalview/datamodel/BinaryNode.java
+++ b/
src/jalview/datamodel/BinaryNode.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/BinarySequence.java
b/src/jalview/datamodel/BinarySequence.java
index
dd4bb60
..
6536828
100755
(executable)
--- a/
src/jalview/datamodel/BinarySequence.java
+++ b/
src/jalview/datamodel/BinarySequence.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/CigarArray.java
b/src/jalview/datamodel/CigarArray.java
index
626143e
..
d39da02
100644
(file)
--- a/
src/jalview/datamodel/CigarArray.java
+++ b/
src/jalview/datamodel/CigarArray.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/datamodel/CigarBase.java
b/src/jalview/datamodel/CigarBase.java
index
2508717
..
7dc187c
100644
(file)
--- a/
src/jalview/datamodel/CigarBase.java
+++ b/
src/jalview/datamodel/CigarBase.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/datamodel/CigarCigar.java
b/src/jalview/datamodel/CigarCigar.java
index
fbba60f
..
11da8da
100644
(file)
--- a/
src/jalview/datamodel/CigarCigar.java
+++ b/
src/jalview/datamodel/CigarCigar.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/datamodel/CigarSimple.java
b/src/jalview/datamodel/CigarSimple.java
index
fd20bfe
..
9bb1327
100644
(file)
--- a/
src/jalview/datamodel/CigarSimple.java
+++ b/
src/jalview/datamodel/CigarSimple.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/datamodel/ColumnSelection.java
b/src/jalview/datamodel/ColumnSelection.java
index
a36faf7
..
cc3b62c
100644
(file)
--- a/
src/jalview/datamodel/ColumnSelection.java
+++ b/
src/jalview/datamodel/ColumnSelection.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/datamodel/DBRefEntry.java
b/src/jalview/datamodel/DBRefEntry.java
index
094628b
..
5e9648d
100755
(executable)
--- a/
src/jalview/datamodel/DBRefEntry.java
+++ b/
src/jalview/datamodel/DBRefEntry.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/DBRefSource.java
b/src/jalview/datamodel/DBRefSource.java
index
b9442df
..
4e0a8f4
100755
(executable)
--- a/
src/jalview/datamodel/DBRefSource.java
+++ b/
src/jalview/datamodel/DBRefSource.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/datamodel/FeatureProperties.java
b/src/jalview/datamodel/FeatureProperties.java
index
6447f1c
..
fdff3c5
100644
(file)
--- a/
src/jalview/datamodel/FeatureProperties.java
+++ b/
src/jalview/datamodel/FeatureProperties.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/datamodel/GraphLine.java
b/src/jalview/datamodel/GraphLine.java
index
92be210
..
867693b
100755
(executable)
--- a/
src/jalview/datamodel/GraphLine.java
+++ b/
src/jalview/datamodel/GraphLine.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/HiddenSequences.java
b/src/jalview/datamodel/HiddenSequences.java
index
ecbe1ec
..
7244633
100755
(executable)
--- a/
src/jalview/datamodel/HiddenSequences.java
+++ b/
src/jalview/datamodel/HiddenSequences.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/Mapping.java
b/src/jalview/datamodel/Mapping.java
index
b6b4c96
..
ae453b2
100644
(file)
--- a/
src/jalview/datamodel/Mapping.java
+++ b/
src/jalview/datamodel/Mapping.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/NodeTransformI.java
b/src/jalview/datamodel/NodeTransformI.java
index
4c1e594
..
2bba75b
100644
(file)
--- a/
src/jalview/datamodel/NodeTransformI.java
+++ b/
src/jalview/datamodel/NodeTransformI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/PDBEntry.java
b/src/jalview/datamodel/PDBEntry.java
index
2c44a57
..
5312a99
100755
(executable)
--- a/
src/jalview/datamodel/PDBEntry.java
+++ b/
src/jalview/datamodel/PDBEntry.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/Provenance.java
b/src/jalview/datamodel/Provenance.java
index
d87618e
..
932bc8b
100755
(executable)
--- a/
src/jalview/datamodel/Provenance.java
+++ b/
src/jalview/datamodel/Provenance.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/ProvenanceEntry.java
b/src/jalview/datamodel/ProvenanceEntry.java
index
b206ebf
..
93e1cbd
100755
(executable)
--- a/
src/jalview/datamodel/ProvenanceEntry.java
+++ b/
src/jalview/datamodel/ProvenanceEntry.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/SearchResults.java
b/src/jalview/datamodel/SearchResults.java
index
85d44f1
..
33b15a9
100755
(executable)
--- a/
src/jalview/datamodel/SearchResults.java
+++ b/
src/jalview/datamodel/SearchResults.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/SeqCigar.java
b/src/jalview/datamodel/SeqCigar.java
index
b2a1f66
..
572acb0
100644
(file)
--- a/
src/jalview/datamodel/SeqCigar.java
+++ b/
src/jalview/datamodel/SeqCigar.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/Sequence.java
b/src/jalview/datamodel/Sequence.java
index
13f928c
..
e6738b1
100755
(executable)
--- a/
src/jalview/datamodel/Sequence.java
+++ b/
src/jalview/datamodel/Sequence.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/SequenceFeature.java
b/src/jalview/datamodel/SequenceFeature.java
index
012f842
..
6c2e33b
100755
(executable)
--- a/
src/jalview/datamodel/SequenceFeature.java
+++ b/
src/jalview/datamodel/SequenceFeature.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/SequenceGroup.java
b/src/jalview/datamodel/SequenceGroup.java
index
be40bce
..
428ce5f
100755
(executable)
--- a/
src/jalview/datamodel/SequenceGroup.java
+++ b/
src/jalview/datamodel/SequenceGroup.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/SequenceI.java
b/src/jalview/datamodel/SequenceI.java
index
a1a7bc2
..
2c06a95
100755
(executable)
--- a/
src/jalview/datamodel/SequenceI.java
+++ b/
src/jalview/datamodel/SequenceI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/SequenceNode.java
b/src/jalview/datamodel/SequenceNode.java
index
622d7b5
..
48bcb5e
100755
(executable)
--- a/
src/jalview/datamodel/SequenceNode.java
+++ b/
src/jalview/datamodel/SequenceNode.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/SequencePoint.java
b/src/jalview/datamodel/SequencePoint.java
index
b22229b
..
d43b617
100755
(executable)
--- a/
src/jalview/datamodel/SequencePoint.java
+++ b/
src/jalview/datamodel/SequencePoint.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/UniprotEntry.java
b/src/jalview/datamodel/UniprotEntry.java
index
8a78179
..
7cf4e77
100755
(executable)
--- a/
src/jalview/datamodel/UniprotEntry.java
+++ b/
src/jalview/datamodel/UniprotEntry.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/UniprotFile.java
b/src/jalview/datamodel/UniprotFile.java
index
5b80d1b
..
4f0b1fd
100755
(executable)
--- a/
src/jalview/datamodel/UniprotFile.java
+++ b/
src/jalview/datamodel/UniprotFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/UniprotProteinName.java
b/src/jalview/datamodel/UniprotProteinName.java
index
dbc93f3
..
1a80038
100755
(executable)
--- a/
src/jalview/datamodel/UniprotProteinName.java
+++ b/
src/jalview/datamodel/UniprotProteinName.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/datamodel/UniprotSequence.java
b/src/jalview/datamodel/UniprotSequence.java
index
6eb0de0
..
7ca1656
100755
(executable)
--- a/
src/jalview/datamodel/UniprotSequence.java
+++ b/
src/jalview/datamodel/UniprotSequence.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/xdb/embl/BasePosition.java
b/src/jalview/datamodel/xdb/embl/BasePosition.java
index
9f350e5
..
2680516
100644
(file)
--- a/
src/jalview/datamodel/xdb/embl/BasePosition.java
+++ b/
src/jalview/datamodel/xdb/embl/BasePosition.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/xdb/embl/EmblEntry.java
b/src/jalview/datamodel/xdb/embl/EmblEntry.java
index
1439a8b
..
227f11b
100644
(file)
--- a/
src/jalview/datamodel/xdb/embl/EmblEntry.java
+++ b/
src/jalview/datamodel/xdb/embl/EmblEntry.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/xdb/embl/EmblError.java
b/src/jalview/datamodel/xdb/embl/EmblError.java
index
ce46265
..
2f18b28
100644
(file)
--- a/
src/jalview/datamodel/xdb/embl/EmblError.java
+++ b/
src/jalview/datamodel/xdb/embl/EmblError.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/xdb/embl/EmblFeature.java
b/src/jalview/datamodel/xdb/embl/EmblFeature.java
index
b727c56
..
27708fd
100644
(file)
--- a/
src/jalview/datamodel/xdb/embl/EmblFeature.java
+++ b/
src/jalview/datamodel/xdb/embl/EmblFeature.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/xdb/embl/EmblFeatureLocElement.java
b/src/jalview/datamodel/xdb/embl/EmblFeatureLocElement.java
index
7021c32
..
610f14d
100644
(file)
--- a/
src/jalview/datamodel/xdb/embl/EmblFeatureLocElement.java
+++ b/
src/jalview/datamodel/xdb/embl/EmblFeatureLocElement.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/xdb/embl/EmblFeatureLocations.java
b/src/jalview/datamodel/xdb/embl/EmblFeatureLocations.java
index
96f21f9
..
5219bf0
100644
(file)
--- a/
src/jalview/datamodel/xdb/embl/EmblFeatureLocations.java
+++ b/
src/jalview/datamodel/xdb/embl/EmblFeatureLocations.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/xdb/embl/EmblFile.java
b/src/jalview/datamodel/xdb/embl/EmblFile.java
index
14b78ce
..
ef6ec68
100644
(file)
--- a/
src/jalview/datamodel/xdb/embl/EmblFile.java
+++ b/
src/jalview/datamodel/xdb/embl/EmblFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/xdb/embl/EmblSequence.java
b/src/jalview/datamodel/xdb/embl/EmblSequence.java
index
b001e70
..
cb5f252
100644
(file)
--- a/
src/jalview/datamodel/xdb/embl/EmblSequence.java
+++ b/
src/jalview/datamodel/xdb/embl/EmblSequence.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/xdb/embl/Qualifier.java
b/src/jalview/datamodel/xdb/embl/Qualifier.java
index
2fba8dc
..
fd948c0
100644
(file)
--- a/
src/jalview/datamodel/xdb/embl/Qualifier.java
+++ b/
src/jalview/datamodel/xdb/embl/Qualifier.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/ext/jmol/JalviewJmolBinding.java
b/src/jalview/ext/jmol/JalviewJmolBinding.java
index
67b688c
..
06a7826
100644
(file)
--- a/
src/jalview/ext/jmol/JalviewJmolBinding.java
+++ b/
src/jalview/ext/jmol/JalviewJmolBinding.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/AlignFrame.java
b/src/jalview/gui/AlignFrame.java
index
b20314b
..
692996f
100755
(executable)
--- a/
src/jalview/gui/AlignFrame.java
+++ b/
src/jalview/gui/AlignFrame.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/AlignViewport.java
b/src/jalview/gui/AlignViewport.java
index
ef7d35c
..
5975ae0
100755
(executable)
--- a/
src/jalview/gui/AlignViewport.java
+++ b/
src/jalview/gui/AlignViewport.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/AlignmentPanel.java
b/src/jalview/gui/AlignmentPanel.java
index
efefeaf
..
335f61e
100755
(executable)
--- a/
src/jalview/gui/AlignmentPanel.java
+++ b/
src/jalview/gui/AlignmentPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/AnnotationColourChooser.java
b/src/jalview/gui/AnnotationColourChooser.java
index
a05ccf1
..
e911cb5
100755
(executable)
--- a/
src/jalview/gui/AnnotationColourChooser.java
+++ b/
src/jalview/gui/AnnotationColourChooser.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/AnnotationExporter.java
b/src/jalview/gui/AnnotationExporter.java
index
e50859d
..
5f1bda1
100755
(executable)
--- a/
src/jalview/gui/AnnotationExporter.java
+++ b/
src/jalview/gui/AnnotationExporter.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/gui/AnnotationLabels.java
b/src/jalview/gui/AnnotationLabels.java
index
b77fab6
..
06c2d22
100755
(executable)
--- a/
src/jalview/gui/AnnotationLabels.java
+++ b/
src/jalview/gui/AnnotationLabels.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/AnnotationPanel.java
b/src/jalview/gui/AnnotationPanel.java
index
01c933a
..
2cfd6c8
100755
(executable)
--- a/
src/jalview/gui/AnnotationPanel.java
+++ b/
src/jalview/gui/AnnotationPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/AppJmol.java
b/src/jalview/gui/AppJmol.java
index
19178f2
..
10e9db7
100644
(file)
--- a/
src/jalview/gui/AppJmol.java
+++ b/
src/jalview/gui/AppJmol.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/AppJmolBinding.java
b/src/jalview/gui/AppJmolBinding.java
index
ed56ebb
..
3483b7e
100644
(file)
--- a/
src/jalview/gui/AppJmolBinding.java
+++ b/
src/jalview/gui/AppJmolBinding.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/ConservationThread.java
b/src/jalview/gui/ConservationThread.java
index
5ed536c
..
27455f6
100644
(file)
--- a/
src/jalview/gui/ConservationThread.java
+++ b/
src/jalview/gui/ConservationThread.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/Console.java
b/src/jalview/gui/Console.java
index
823b594
..
77ff5ce
100644
(file)
--- a/
src/jalview/gui/Console.java
+++ b/
src/jalview/gui/Console.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/CutAndPasteTransfer.java
b/src/jalview/gui/CutAndPasteTransfer.java
index
f608a52
..
a59927a
100755
(executable)
--- a/
src/jalview/gui/CutAndPasteTransfer.java
+++ b/
src/jalview/gui/CutAndPasteTransfer.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/DasSourceBrowser.java
b/src/jalview/gui/DasSourceBrowser.java
index
8ce0995
..
2adc40d
100755
(executable)
--- a/
src/jalview/gui/DasSourceBrowser.java
+++ b/
src/jalview/gui/DasSourceBrowser.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/gui/Desktop.java
b/src/jalview/gui/Desktop.java
index
6912e19
..
b90ff96
100755
(executable)
--- a/
src/jalview/gui/Desktop.java
+++ b/
src/jalview/gui/Desktop.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/EPSOptions.java
b/src/jalview/gui/EPSOptions.java
index
9686f18
..
8fc4958
100755
(executable)
--- a/
src/jalview/gui/EPSOptions.java
+++ b/
src/jalview/gui/EPSOptions.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/EditNameDialog.java
b/src/jalview/gui/EditNameDialog.java
index
4d3e167
..
4d446a9
100644
(file)
--- a/
src/jalview/gui/EditNameDialog.java
+++ b/
src/jalview/gui/EditNameDialog.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/FeatureColourChooser.java
b/src/jalview/gui/FeatureColourChooser.java
index
e9a88ac
..
46e27cc
100644
(file)
--- a/
src/jalview/gui/FeatureColourChooser.java
+++ b/
src/jalview/gui/FeatureColourChooser.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/FeatureRenderer.java
b/src/jalview/gui/FeatureRenderer.java
index
021c27e
..
8da6e3c
100755
(executable)
--- a/
src/jalview/gui/FeatureRenderer.java
+++ b/
src/jalview/gui/FeatureRenderer.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/FeatureSettings.java
b/src/jalview/gui/FeatureSettings.java
index
1997dc9
..
4719e26
100755
(executable)
--- a/
src/jalview/gui/FeatureSettings.java
+++ b/
src/jalview/gui/FeatureSettings.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/Finder.java
b/src/jalview/gui/Finder.java
index
1c767a1
..
1b78f03
100755
(executable)
--- a/
src/jalview/gui/Finder.java
+++ b/
src/jalview/gui/Finder.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/FontChooser.java
b/src/jalview/gui/FontChooser.java
index
12493eb
..
a04ebdf
100755
(executable)
--- a/
src/jalview/gui/FontChooser.java
+++ b/
src/jalview/gui/FontChooser.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/IProgressIndicator.java
b/src/jalview/gui/IProgressIndicator.java
index
6537095
..
f3f342e
100644
(file)
--- a/
src/jalview/gui/IProgressIndicator.java
+++ b/
src/jalview/gui/IProgressIndicator.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/gui/IProgressIndicatorHandler.java
b/src/jalview/gui/IProgressIndicatorHandler.java
index
56be66d
..
d89656a
100644
(file)
--- a/
src/jalview/gui/IProgressIndicatorHandler.java
+++ b/
src/jalview/gui/IProgressIndicatorHandler.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/gui/IdCanvas.java
b/src/jalview/gui/IdCanvas.java
index
b713913
..
79fe7f7
100755
(executable)
--- a/
src/jalview/gui/IdCanvas.java
+++ b/
src/jalview/gui/IdCanvas.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/IdPanel.java
b/src/jalview/gui/IdPanel.java
index
38912fd
..
3c94fe7
100755
(executable)
--- a/
src/jalview/gui/IdPanel.java
+++ b/
src/jalview/gui/IdPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/IdwidthAdjuster.java
b/src/jalview/gui/IdwidthAdjuster.java
index
ab4cbad
..
fc44b56
100755
(executable)
--- a/
src/jalview/gui/IdwidthAdjuster.java
+++ b/
src/jalview/gui/IdwidthAdjuster.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/Jalview2XML.java
b/src/jalview/gui/Jalview2XML.java
index
a93e84c
..
11a05fb
100755
(executable)
--- a/
src/jalview/gui/Jalview2XML.java
+++ b/
src/jalview/gui/Jalview2XML.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/Jalview2XML_V1.java
b/src/jalview/gui/Jalview2XML_V1.java
index
5d1a89b
..
5f7df72
100755
(executable)
--- a/
src/jalview/gui/Jalview2XML_V1.java
+++ b/
src/jalview/gui/Jalview2XML_V1.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/gui/JalviewAppender.java
b/src/jalview/gui/JalviewAppender.java
index
9c70e62
..
60faf50
100644
(file)
--- a/
src/jalview/gui/JalviewAppender.java
+++ b/
src/jalview/gui/JalviewAppender.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/JalviewChangeSupport.java
b/src/jalview/gui/JalviewChangeSupport.java
index
371beac
..
8d3a407
100644
(file)
--- a/
src/jalview/gui/JalviewChangeSupport.java
+++ b/
src/jalview/gui/JalviewChangeSupport.java
@@
-1,3
+1,20
@@
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
+ * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ */
package jalview.gui;
import java.beans.PropertyChangeEvent;
package jalview.gui;
import java.beans.PropertyChangeEvent;
@@
-67,4
+84,4
@@
public class JalviewChangeSupport implements PropertyChangeListener
changeSupport.removePropertyChangeListener(propertyName, listener);
}
changeSupport.removePropertyChangeListener(propertyName, listener);
}
-}
\ No newline at end of file
+}
diff --git
a/src/jalview/gui/JvSwingUtils.java
b/src/jalview/gui/JvSwingUtils.java
index
f41e85a
..
adc8577
100644
(file)
--- a/
src/jalview/gui/JvSwingUtils.java
+++ b/
src/jalview/gui/JvSwingUtils.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/OOMWarning.java
b/src/jalview/gui/OOMWarning.java
index
8bcb29c
..
0523365
100644
(file)
--- a/
src/jalview/gui/OOMWarning.java
+++ b/
src/jalview/gui/OOMWarning.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/gui/OverviewPanel.java
b/src/jalview/gui/OverviewPanel.java
index
2426d4d
..
afd695c
100755
(executable)
--- a/
src/jalview/gui/OverviewPanel.java
+++ b/
src/jalview/gui/OverviewPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/PCAPanel.java
b/src/jalview/gui/PCAPanel.java
index
2171e08
..
deb80c4
100755
(executable)
--- a/
src/jalview/gui/PCAPanel.java
+++ b/
src/jalview/gui/PCAPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/PaintRefresher.java
b/src/jalview/gui/PaintRefresher.java
index
f974f0a
..
41ae9c2
100755
(executable)
--- a/
src/jalview/gui/PaintRefresher.java
+++ b/
src/jalview/gui/PaintRefresher.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/PairwiseAlignPanel.java
b/src/jalview/gui/PairwiseAlignPanel.java
index
0dbb9c2
..
be654ac
100755
(executable)
--- a/
src/jalview/gui/PairwiseAlignPanel.java
+++ b/
src/jalview/gui/PairwiseAlignPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/PopupMenu.java
b/src/jalview/gui/PopupMenu.java
index
94d22ef
..
4597364
100755
(executable)
--- a/
src/jalview/gui/PopupMenu.java
+++ b/
src/jalview/gui/PopupMenu.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/Preferences.java
b/src/jalview/gui/Preferences.java
index
70f8f3e
..
11b4df0
100755
(executable)
--- a/
src/jalview/gui/Preferences.java
+++ b/
src/jalview/gui/Preferences.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/PromptUserConfig.java
b/src/jalview/gui/PromptUserConfig.java
index
ac15f2b
..
17b865e
100644
(file)
--- a/
src/jalview/gui/PromptUserConfig.java
+++ b/
src/jalview/gui/PromptUserConfig.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/RedundancyPanel.java
b/src/jalview/gui/RedundancyPanel.java
index
adbbfc3
..
9750222
100755
(executable)
--- a/
src/jalview/gui/RedundancyPanel.java
+++ b/
src/jalview/gui/RedundancyPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/RotatableCanvas.java
b/src/jalview/gui/RotatableCanvas.java
index
60cc19c
..
19fb439
100755
(executable)
--- a/
src/jalview/gui/RotatableCanvas.java
+++ b/
src/jalview/gui/RotatableCanvas.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/ScalePanel.java
b/src/jalview/gui/ScalePanel.java
index
c50330b
..
b23d5a8
100755
(executable)
--- a/
src/jalview/gui/ScalePanel.java
+++ b/
src/jalview/gui/ScalePanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/ScriptWindow.java
b/src/jalview/gui/ScriptWindow.java
index
c80248f
..
fbb99b1
100644
(file)
--- a/
src/jalview/gui/ScriptWindow.java
+++ b/
src/jalview/gui/ScriptWindow.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/SeqCanvas.java
b/src/jalview/gui/SeqCanvas.java
index
f625838
..
f2133b0
100755
(executable)
--- a/
src/jalview/gui/SeqCanvas.java
+++ b/
src/jalview/gui/SeqCanvas.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/SeqPanel.java
b/src/jalview/gui/SeqPanel.java
index
7502812
..
ab0e8c0
100755
(executable)
--- a/
src/jalview/gui/SeqPanel.java
+++ b/
src/jalview/gui/SeqPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/SequenceFetcher.java
b/src/jalview/gui/SequenceFetcher.java
index
b7cccf7
..
c744432
100755
(executable)
--- a/
src/jalview/gui/SequenceFetcher.java
+++ b/
src/jalview/gui/SequenceFetcher.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/SequenceRenderer.java
b/src/jalview/gui/SequenceRenderer.java
index
b15851c
..
4cce0aa
100755
(executable)
--- a/
src/jalview/gui/SequenceRenderer.java
+++ b/
src/jalview/gui/SequenceRenderer.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/SliderPanel.java
b/src/jalview/gui/SliderPanel.java
index
ed3fc52
..
6ac8a12
100755
(executable)
--- a/
src/jalview/gui/SliderPanel.java
+++ b/
src/jalview/gui/SliderPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/SplashScreen.java
b/src/jalview/gui/SplashScreen.java
index
e855057
..
f2829d8
100755
(executable)
--- a/
src/jalview/gui/SplashScreen.java
+++ b/
src/jalview/gui/SplashScreen.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/TextColourChooser.java
b/src/jalview/gui/TextColourChooser.java
index
bec6823
..
b8501fe
100644
(file)
--- a/
src/jalview/gui/TextColourChooser.java
+++ b/
src/jalview/gui/TextColourChooser.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/TreeCanvas.java
b/src/jalview/gui/TreeCanvas.java
index
9022182
..
29da2ad
100755
(executable)
--- a/
src/jalview/gui/TreeCanvas.java
+++ b/
src/jalview/gui/TreeCanvas.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/TreePanel.java
b/src/jalview/gui/TreePanel.java
index
ea0b791
..
6bcfd25
100755
(executable)
--- a/
src/jalview/gui/TreePanel.java
+++ b/
src/jalview/gui/TreePanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/UserDefinedColours.java
b/src/jalview/gui/UserDefinedColours.java
index
f4afe56
..
f2306fe
100755
(executable)
--- a/
src/jalview/gui/UserDefinedColours.java
+++ b/
src/jalview/gui/UserDefinedColours.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/UserQuestionnaireCheck.java
b/src/jalview/gui/UserQuestionnaireCheck.java
index
1c08b9b
..
4cca2eb
100644
(file)
--- a/
src/jalview/gui/UserQuestionnaireCheck.java
+++ b/
src/jalview/gui/UserQuestionnaireCheck.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/VamsasApplication.java
b/src/jalview/gui/VamsasApplication.java
index
efd94de
..
617ac83
100644
(file)
--- a/
src/jalview/gui/VamsasApplication.java
+++ b/
src/jalview/gui/VamsasApplication.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/WebserviceInfo.java
b/src/jalview/gui/WebserviceInfo.java
index
4d0c634
..
cc76409
100755
(executable)
--- a/
src/jalview/gui/WebserviceInfo.java
+++ b/
src/jalview/gui/WebserviceInfo.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/WsJobParameters.java
b/src/jalview/gui/WsJobParameters.java
index
440a714
..
49e51ee
100644
(file)
--- a/
src/jalview/gui/WsJobParameters.java
+++ b/
src/jalview/gui/WsJobParameters.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/WsParamSetManager.java
b/src/jalview/gui/WsParamSetManager.java
index
da42755
..
1c7c22d
100644
(file)
--- a/
src/jalview/gui/WsParamSetManager.java
+++ b/
src/jalview/gui/WsParamSetManager.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/WsPreferences.java
b/src/jalview/gui/WsPreferences.java
index
ff149c1
..
55e8f1f
100644
(file)
--- a/
src/jalview/gui/WsPreferences.java
+++ b/
src/jalview/gui/WsPreferences.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/AMSAFile.java
b/src/jalview/io/AMSAFile.java
index
0a4624b
..
34385c8
100644
(file)
--- a/
src/jalview/io/AMSAFile.java
+++ b/
src/jalview/io/AMSAFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/AlignFile.java
b/src/jalview/io/AlignFile.java
index
1e1b777
..
032bda5
100755
(executable)
--- a/
src/jalview/io/AlignFile.java
+++ b/
src/jalview/io/AlignFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/AnnotationFile.java
b/src/jalview/io/AnnotationFile.java
index
ef2673a
..
a96ff67
100755
(executable)
--- a/
src/jalview/io/AnnotationFile.java
+++ b/
src/jalview/io/AnnotationFile.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/io/AppletFormatAdapter.java
b/src/jalview/io/AppletFormatAdapter.java
index
b1952a9
..
166e4d3
100755
(executable)
--- a/
src/jalview/io/AppletFormatAdapter.java
+++ b/
src/jalview/io/AppletFormatAdapter.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/BLCFile.java
b/src/jalview/io/BLCFile.java
index
d0eb80e
..
79f0c12
100755
(executable)
--- a/
src/jalview/io/BLCFile.java
+++ b/
src/jalview/io/BLCFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/ClansFile.java
b/src/jalview/io/ClansFile.java
index
fafeaa6
..
02e0b10
100644
(file)
--- a/
src/jalview/io/ClansFile.java
+++ b/
src/jalview/io/ClansFile.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/io/ClustalFile.java
b/src/jalview/io/ClustalFile.java
index
4c700ed
..
6f42685
100755
(executable)
--- a/
src/jalview/io/ClustalFile.java
+++ b/
src/jalview/io/ClustalFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/DBRefFile.java
b/src/jalview/io/DBRefFile.java
index
a1a88d9
..
6b1a3de
100644
(file)
--- a/
src/jalview/io/DBRefFile.java
+++ b/
src/jalview/io/DBRefFile.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/io/FastaFile.java
b/src/jalview/io/FastaFile.java
index
5a15862
..
63ea4d3
100755
(executable)
--- a/
src/jalview/io/FastaFile.java
+++ b/
src/jalview/io/FastaFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/FeaturesFile.java
b/src/jalview/io/FeaturesFile.java
index
7c70b54
..
0fb555d
100755
(executable)
--- a/
src/jalview/io/FeaturesFile.java
+++ b/
src/jalview/io/FeaturesFile.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/io/FileLoader.java
b/src/jalview/io/FileLoader.java
index
fe31a40
..
0e017e6
100755
(executable)
--- a/
src/jalview/io/FileLoader.java
+++ b/
src/jalview/io/FileLoader.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/FileParse.java
b/src/jalview/io/FileParse.java
index
4670d99
..
64c87cd
100755
(executable)
--- a/
src/jalview/io/FileParse.java
+++ b/
src/jalview/io/FileParse.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/FormatAdapter.java
b/src/jalview/io/FormatAdapter.java
index
79a9190
..
5117612
100755
(executable)
--- a/
src/jalview/io/FormatAdapter.java
+++ b/
src/jalview/io/FormatAdapter.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/HTMLOutput.java
b/src/jalview/io/HTMLOutput.java
index
f131ce6
..
52b7770
100755
(executable)
--- a/
src/jalview/io/HTMLOutput.java
+++ b/
src/jalview/io/HTMLOutput.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/IdentifyFile.java
b/src/jalview/io/IdentifyFile.java
index
8a9a121
..
325f519
100755
(executable)
--- a/
src/jalview/io/IdentifyFile.java
+++ b/
src/jalview/io/IdentifyFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/JPredFile.java
b/src/jalview/io/JPredFile.java
index
f41c2c3
..
5c0e8f5
100755
(executable)
--- a/
src/jalview/io/JPredFile.java
+++ b/
src/jalview/io/JPredFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/JalviewFileChooser.java
b/src/jalview/io/JalviewFileChooser.java
index
acd24b3
..
5b33269
100755
(executable)
--- a/
src/jalview/io/JalviewFileChooser.java
+++ b/
src/jalview/io/JalviewFileChooser.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/JalviewFileFilter.java
b/src/jalview/io/JalviewFileFilter.java
index
a9a2d86
..
6e50f13
100755
(executable)
--- a/
src/jalview/io/JalviewFileFilter.java
+++ b/
src/jalview/io/JalviewFileFilter.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/JalviewFileView.java
b/src/jalview/io/JalviewFileView.java
index
5e0f588
..
655739b
100755
(executable)
--- a/
src/jalview/io/JalviewFileView.java
+++ b/
src/jalview/io/JalviewFileView.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/JnetAnnotationMaker.java
b/src/jalview/io/JnetAnnotationMaker.java
index
11f05b7
..
671e44f
100755
(executable)
--- a/
src/jalview/io/JnetAnnotationMaker.java
+++ b/
src/jalview/io/JnetAnnotationMaker.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/MSFfile.java
b/src/jalview/io/MSFfile.java
index
1f38ca0
..
e525ce1
100755
(executable)
--- a/
src/jalview/io/MSFfile.java
+++ b/
src/jalview/io/MSFfile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/MatrixFile.java
b/src/jalview/io/MatrixFile.java
index
aeaee02
..
edfff75
100644
(file)
--- a/
src/jalview/io/MatrixFile.java
+++ b/
src/jalview/io/MatrixFile.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/io/ModellerDescription.java
b/src/jalview/io/ModellerDescription.java
index
3af2f93
..
aea4559
100755
(executable)
--- a/
src/jalview/io/ModellerDescription.java
+++ b/
src/jalview/io/ModellerDescription.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/NewickFile.java
b/src/jalview/io/NewickFile.java
index
b7df38f
..
06ea915
100755
(executable)
--- a/
src/jalview/io/NewickFile.java
+++ b/
src/jalview/io/NewickFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/PIRFile.java
b/src/jalview/io/PIRFile.java
index
ef06b0c
..
b46047e
100755
(executable)
--- a/
src/jalview/io/PIRFile.java
+++ b/
src/jalview/io/PIRFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/PfamFile.java
b/src/jalview/io/PfamFile.java
index
1407ddc
..
40845d0
100755
(executable)
--- a/
src/jalview/io/PfamFile.java
+++ b/
src/jalview/io/PfamFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/PileUpfile.java
b/src/jalview/io/PileUpfile.java
index
dd28176
..
8837141
100755
(executable)
--- a/
src/jalview/io/PileUpfile.java
+++ b/
src/jalview/io/PileUpfile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/SimpleBlastFile.java
b/src/jalview/io/SimpleBlastFile.java
index
b407a45
..
8dcde0c
100644
(file)
--- a/
src/jalview/io/SimpleBlastFile.java
+++ b/
src/jalview/io/SimpleBlastFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/StockholmFile.java
b/src/jalview/io/StockholmFile.java
index
34ce3bf
..
e9d0ff5
100644
(file)
--- a/
src/jalview/io/StockholmFile.java
+++ b/
src/jalview/io/StockholmFile.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/io/VamsasAppDatastore.java
b/src/jalview/io/VamsasAppDatastore.java
index
06154c8
..
1a73d4e
100644
(file)
--- a/
src/jalview/io/VamsasAppDatastore.java
+++ b/
src/jalview/io/VamsasAppDatastore.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/WSWUBlastClient.java
b/src/jalview/io/WSWUBlastClient.java
index
8fbf002
..
820d163
100755
(executable)
--- a/
src/jalview/io/WSWUBlastClient.java
+++ b/
src/jalview/io/WSWUBlastClient.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/vamsas/Datasetsequence.java
b/src/jalview/io/vamsas/Datasetsequence.java
index
7af8a7b
..
c85c5e0
100644
(file)
--- a/
src/jalview/io/vamsas/Datasetsequence.java
+++ b/
src/jalview/io/vamsas/Datasetsequence.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/io/vamsas/DatastoreItem.java
b/src/jalview/io/vamsas/DatastoreItem.java
index
f2d49e7
..
b421c98
100644
(file)
--- a/
src/jalview/io/vamsas/DatastoreItem.java
+++ b/
src/jalview/io/vamsas/DatastoreItem.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/vamsas/DatastoreRegistry.java
b/src/jalview/io/vamsas/DatastoreRegistry.java
index
7412f6a
..
b9f8c61
100644
(file)
--- a/
src/jalview/io/vamsas/DatastoreRegistry.java
+++ b/
src/jalview/io/vamsas/DatastoreRegistry.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/vamsas/Dbref.java
b/src/jalview/io/vamsas/Dbref.java
index
28ae762
..
0a5eb7a
100644
(file)
--- a/
src/jalview/io/vamsas/Dbref.java
+++ b/
src/jalview/io/vamsas/Dbref.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/vamsas/LocalDocSyncObject.java
b/src/jalview/io/vamsas/LocalDocSyncObject.java
index
0dfddf1
..
2e3b12d
100644
(file)
--- a/
src/jalview/io/vamsas/LocalDocSyncObject.java
+++ b/
src/jalview/io/vamsas/LocalDocSyncObject.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/vamsas/Rangetype.java
b/src/jalview/io/vamsas/Rangetype.java
index
c4b817d
..
5ec00f6
100644
(file)
--- a/
src/jalview/io/vamsas/Rangetype.java
+++ b/
src/jalview/io/vamsas/Rangetype.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/vamsas/Sequencefeature.java
b/src/jalview/io/vamsas/Sequencefeature.java
index
0525cf9
..
e0951ec
100644
(file)
--- a/
src/jalview/io/vamsas/Sequencefeature.java
+++ b/
src/jalview/io/vamsas/Sequencefeature.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/io/vamsas/Sequencemapping.java
b/src/jalview/io/vamsas/Sequencemapping.java
index
9263690
..
74f5bc5
100644
(file)
--- a/
src/jalview/io/vamsas/Sequencemapping.java
+++ b/
src/jalview/io/vamsas/Sequencemapping.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/vamsas/Tree.java
b/src/jalview/io/vamsas/Tree.java
index
9b76f91
..
8fc30c8
100644
(file)
--- a/
src/jalview/io/vamsas/Tree.java
+++ b/
src/jalview/io/vamsas/Tree.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GAlignFrame.java
b/src/jalview/jbgui/GAlignFrame.java
index
9260b23
..
bb3954f
100755
(executable)
--- a/
src/jalview/jbgui/GAlignFrame.java
+++ b/
src/jalview/jbgui/GAlignFrame.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GAlignmentPanel.java
b/src/jalview/jbgui/GAlignmentPanel.java
index
0f59792
..
882bc61
100755
(executable)
--- a/
src/jalview/jbgui/GAlignmentPanel.java
+++ b/
src/jalview/jbgui/GAlignmentPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GCutAndPasteTransfer.java
b/src/jalview/jbgui/GCutAndPasteTransfer.java
index
d809098
..
bb6c45a
100755
(executable)
--- a/
src/jalview/jbgui/GCutAndPasteTransfer.java
+++ b/
src/jalview/jbgui/GCutAndPasteTransfer.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GDasSourceBrowser.java
b/src/jalview/jbgui/GDasSourceBrowser.java
index
bb7db14
..
1fefa31
100755
(executable)
--- a/
src/jalview/jbgui/GDasSourceBrowser.java
+++ b/
src/jalview/jbgui/GDasSourceBrowser.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/jbgui/GDesktop.java
b/src/jalview/jbgui/GDesktop.java
index
5effdbd
..
0d6423a
100755
(executable)
--- a/
src/jalview/jbgui/GDesktop.java
+++ b/
src/jalview/jbgui/GDesktop.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GFinder.java
b/src/jalview/jbgui/GFinder.java
index
9691455
..
93c53ad
100755
(executable)
--- a/
src/jalview/jbgui/GFinder.java
+++ b/
src/jalview/jbgui/GFinder.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GFontChooser.java
b/src/jalview/jbgui/GFontChooser.java
index
e0e71bb
..
5933ea0
100755
(executable)
--- a/
src/jalview/jbgui/GFontChooser.java
+++ b/
src/jalview/jbgui/GFontChooser.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GPCAPanel.java
b/src/jalview/jbgui/GPCAPanel.java
index
e4b20a0
..
317494f
100755
(executable)
--- a/
src/jalview/jbgui/GPCAPanel.java
+++ b/
src/jalview/jbgui/GPCAPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GPairwiseAlignPanel.java
b/src/jalview/jbgui/GPairwiseAlignPanel.java
index
a813f6d
..
b8d8aed
100755
(executable)
--- a/
src/jalview/jbgui/GPairwiseAlignPanel.java
+++ b/
src/jalview/jbgui/GPairwiseAlignPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GPreferences.java
b/src/jalview/jbgui/GPreferences.java
index
aaa73a1
..
f2b417a
100755
(executable)
--- a/
src/jalview/jbgui/GPreferences.java
+++ b/
src/jalview/jbgui/GPreferences.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GSequenceLink.java
b/src/jalview/jbgui/GSequenceLink.java
index
d9669c8
..
5bcc9ea
100755
(executable)
--- a/
src/jalview/jbgui/GSequenceLink.java
+++ b/
src/jalview/jbgui/GSequenceLink.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GSliderPanel.java
b/src/jalview/jbgui/GSliderPanel.java
index
b3663fe
..
7cd310b
100755
(executable)
--- a/
src/jalview/jbgui/GSliderPanel.java
+++ b/
src/jalview/jbgui/GSliderPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GStructureViewer.java
b/src/jalview/jbgui/GStructureViewer.java
index
26bdad2
..
d4a3451
100644
(file)
--- a/
src/jalview/jbgui/GStructureViewer.java
+++ b/
src/jalview/jbgui/GStructureViewer.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GTreePanel.java
b/src/jalview/jbgui/GTreePanel.java
index
d3385a5
..
634a7f1
100755
(executable)
--- a/
src/jalview/jbgui/GTreePanel.java
+++ b/
src/jalview/jbgui/GTreePanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GUserDefinedColours.java
b/src/jalview/jbgui/GUserDefinedColours.java
index
6085b64
..
8a5a173
100755
(executable)
--- a/
src/jalview/jbgui/GUserDefinedColours.java
+++ b/
src/jalview/jbgui/GUserDefinedColours.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GWebserviceInfo.java
b/src/jalview/jbgui/GWebserviceInfo.java
index
9fb3710
..
691b10c
100755
(executable)
--- a/
src/jalview/jbgui/GWebserviceInfo.java
+++ b/
src/jalview/jbgui/GWebserviceInfo.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GWsPreferences.java
b/src/jalview/jbgui/GWsPreferences.java
index
da9322c
..
fdc2aeb
100644
(file)
--- a/
src/jalview/jbgui/GWsPreferences.java
+++ b/
src/jalview/jbgui/GWsPreferences.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/math/Matrix.java
b/src/jalview/math/Matrix.java
index
10a17ab
..
71443a2
100755
(executable)
--- a/
src/jalview/math/Matrix.java
+++ b/
src/jalview/math/Matrix.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/math/RotatableMatrix.java
b/src/jalview/math/RotatableMatrix.java
index
674e069
..
ffb52a1
100755
(executable)
--- a/
src/jalview/math/RotatableMatrix.java
+++ b/
src/jalview/math/RotatableMatrix.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/AlcodMap.java
b/src/jalview/schemabinding/version2/AlcodMap.java
index
3b1aa1b
..
d95ae7c
100644
(file)
--- a/
src/jalview/schemabinding/version2/AlcodMap.java
+++ b/
src/jalview/schemabinding/version2/AlcodMap.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/Alcodon.java
b/src/jalview/schemabinding/version2/Alcodon.java
index
9bd0a7f
..
92d73fe
100644
(file)
--- a/
src/jalview/schemabinding/version2/Alcodon.java
+++ b/
src/jalview/schemabinding/version2/Alcodon.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/AlcodonFrame.java
b/src/jalview/schemabinding/version2/AlcodonFrame.java
index
8bbe3dd
..
fc693d3
100644
(file)
--- a/
src/jalview/schemabinding/version2/AlcodonFrame.java
+++ b/
src/jalview/schemabinding/version2/AlcodonFrame.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/Annotation.java
b/src/jalview/schemabinding/version2/Annotation.java
index
ddf63fb
..
ace0a1b
100755
(executable)
--- a/
src/jalview/schemabinding/version2/Annotation.java
+++ b/
src/jalview/schemabinding/version2/Annotation.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/AnnotationColours.java
b/src/jalview/schemabinding/version2/AnnotationColours.java
index
19f92b8
..
cd777af
100755
(executable)
--- a/
src/jalview/schemabinding/version2/AnnotationColours.java
+++ b/
src/jalview/schemabinding/version2/AnnotationColours.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/AnnotationElement.java
b/src/jalview/schemabinding/version2/AnnotationElement.java
index
5f2ab2c
..
a57d49e
100755
(executable)
--- a/
src/jalview/schemabinding/version2/AnnotationElement.java
+++ b/
src/jalview/schemabinding/version2/AnnotationElement.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/Colour.java
b/src/jalview/schemabinding/version2/Colour.java
index
7f4a6b1
..
4015904
100755
(executable)
--- a/
src/jalview/schemabinding/version2/Colour.java
+++ b/
src/jalview/schemabinding/version2/Colour.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/DBRef.java
b/src/jalview/schemabinding/version2/DBRef.java
index
155d162
..
687e4e7
100644
(file)
--- a/
src/jalview/schemabinding/version2/DBRef.java
+++ b/
src/jalview/schemabinding/version2/DBRef.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/Feature.java
b/src/jalview/schemabinding/version2/Feature.java
index
ebd7424
..
6545dbf
100755
(executable)
--- a/
src/jalview/schemabinding/version2/Feature.java
+++ b/
src/jalview/schemabinding/version2/Feature.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/FeatureSettings.java
b/src/jalview/schemabinding/version2/FeatureSettings.java
index
9bacca3
..
590847a
100755
(executable)
--- a/
src/jalview/schemabinding/version2/FeatureSettings.java
+++ b/
src/jalview/schemabinding/version2/FeatureSettings.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/Features.java
b/src/jalview/schemabinding/version2/Features.java
index
790ecfa
..
74db5ed
100755
(executable)
--- a/
src/jalview/schemabinding/version2/Features.java
+++ b/
src/jalview/schemabinding/version2/Features.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/Group.java
b/src/jalview/schemabinding/version2/Group.java
index
e446cb2
..
54a6db6
100644
(file)
--- a/
src/jalview/schemabinding/version2/Group.java
+++ b/
src/jalview/schemabinding/version2/Group.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/HiddenColumns.java
b/src/jalview/schemabinding/version2/HiddenColumns.java
index
ea6f422
..
0956cd1
100644
(file)
--- a/
src/jalview/schemabinding/version2/HiddenColumns.java
+++ b/
src/jalview/schemabinding/version2/HiddenColumns.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/JGroup.java
b/src/jalview/schemabinding/version2/JGroup.java
index
4da0f75
..
1f2cae4
100755
(executable)
--- a/
src/jalview/schemabinding/version2/JGroup.java
+++ b/
src/jalview/schemabinding/version2/JGroup.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/JSeq.java
b/src/jalview/schemabinding/version2/JSeq.java
index
cad210a
..
5b558e1
100755
(executable)
--- a/
src/jalview/schemabinding/version2/JSeq.java
+++ b/
src/jalview/schemabinding/version2/JSeq.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/JalviewModel.java
b/src/jalview/schemabinding/version2/JalviewModel.java
index
ba483e6
..
97e71fb
100755
(executable)
--- a/
src/jalview/schemabinding/version2/JalviewModel.java
+++ b/
src/jalview/schemabinding/version2/JalviewModel.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/JalviewModelSequence.java
b/src/jalview/schemabinding/version2/JalviewModelSequence.java
index
61a74ff
..
2a53bae
100755
(executable)
--- a/
src/jalview/schemabinding/version2/JalviewModelSequence.java
+++ b/
src/jalview/schemabinding/version2/JalviewModelSequence.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/JalviewUserColours.java
b/src/jalview/schemabinding/version2/JalviewUserColours.java
index
36e09f1
..
5025e86
100755
(executable)
--- a/
src/jalview/schemabinding/version2/JalviewUserColours.java
+++ b/
src/jalview/schemabinding/version2/JalviewUserColours.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/MapListFrom.java
b/src/jalview/schemabinding/version2/MapListFrom.java
index
34714b6
..
04fc336
100644
(file)
--- a/
src/jalview/schemabinding/version2/MapListFrom.java
+++ b/
src/jalview/schemabinding/version2/MapListFrom.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/MapListTo.java
b/src/jalview/schemabinding/version2/MapListTo.java
index
5b547ee
..
1fc2d9f
100644
(file)
--- a/
src/jalview/schemabinding/version2/MapListTo.java
+++ b/
src/jalview/schemabinding/version2/MapListTo.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/MapListType.java
b/src/jalview/schemabinding/version2/MapListType.java
index
a4097a5
..
bdf2bc7
100644
(file)
--- a/
src/jalview/schemabinding/version2/MapListType.java
+++ b/
src/jalview/schemabinding/version2/MapListType.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/Mapping.java
b/src/jalview/schemabinding/version2/Mapping.java
index
5ae5031
..
021dbc6
100644
(file)
--- a/
src/jalview/schemabinding/version2/Mapping.java
+++ b/
src/jalview/schemabinding/version2/Mapping.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/MappingChoice.java
b/src/jalview/schemabinding/version2/MappingChoice.java
index
db41f09
..
61d2beb
100644
(file)
--- a/
src/jalview/schemabinding/version2/MappingChoice.java
+++ b/
src/jalview/schemabinding/version2/MappingChoice.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/OtherData.java
b/src/jalview/schemabinding/version2/OtherData.java
index
85301fa
..
80f3487
100644
(file)
--- a/
src/jalview/schemabinding/version2/OtherData.java
+++ b/
src/jalview/schemabinding/version2/OtherData.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/Pdbentry.java
b/src/jalview/schemabinding/version2/Pdbentry.java
index
6721c5b
..
31b4cfb
100755
(executable)
--- a/
src/jalview/schemabinding/version2/Pdbentry.java
+++ b/
src/jalview/schemabinding/version2/Pdbentry.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/PdbentryItem.java
b/src/jalview/schemabinding/version2/PdbentryItem.java
index
9cd3c47
..
4158f5f
100755
(executable)
--- a/
src/jalview/schemabinding/version2/PdbentryItem.java
+++ b/
src/jalview/schemabinding/version2/PdbentryItem.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/Pdbids.java
b/src/jalview/schemabinding/version2/Pdbids.java
index
944bcfe
..
6cf2673
100755
(executable)
--- a/
src/jalview/schemabinding/version2/Pdbids.java
+++ b/
src/jalview/schemabinding/version2/Pdbids.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/Property.java
b/src/jalview/schemabinding/version2/Property.java
index
13905ec
..
cea912e
100755
(executable)
--- a/
src/jalview/schemabinding/version2/Property.java
+++ b/
src/jalview/schemabinding/version2/Property.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/Sequence.java
b/src/jalview/schemabinding/version2/Sequence.java
index
4ec2aaf
..
d1a18a6
100755
(executable)
--- a/
src/jalview/schemabinding/version2/Sequence.java
+++ b/
src/jalview/schemabinding/version2/Sequence.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/SequenceSet.java
b/src/jalview/schemabinding/version2/SequenceSet.java
index
bd5efa9
..
3d9661d
100755
(executable)
--- a/
src/jalview/schemabinding/version2/SequenceSet.java
+++ b/
src/jalview/schemabinding/version2/SequenceSet.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/SequenceSetProperties.java
b/src/jalview/schemabinding/version2/SequenceSetProperties.java
index
dca7936
..
e987a4f
100644
(file)
--- a/
src/jalview/schemabinding/version2/SequenceSetProperties.java
+++ b/
src/jalview/schemabinding/version2/SequenceSetProperties.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/SequenceType.java
b/src/jalview/schemabinding/version2/SequenceType.java
index
ce75ece
..
a20e9dd
100755
(executable)
--- a/
src/jalview/schemabinding/version2/SequenceType.java
+++ b/
src/jalview/schemabinding/version2/SequenceType.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/Setting.java
b/src/jalview/schemabinding/version2/Setting.java
index
9a49315
..
02af708
100755
(executable)
--- a/
src/jalview/schemabinding/version2/Setting.java
+++ b/
src/jalview/schemabinding/version2/Setting.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/StructureState.java
b/src/jalview/schemabinding/version2/StructureState.java
index
4ce6aa7
..
f951678
100644
(file)
--- a/
src/jalview/schemabinding/version2/StructureState.java
+++ b/
src/jalview/schemabinding/version2/StructureState.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/ThresholdLine.java
b/src/jalview/schemabinding/version2/ThresholdLine.java
index
f479c36
..
66f2d2c
100755
(executable)
--- a/
src/jalview/schemabinding/version2/ThresholdLine.java
+++ b/
src/jalview/schemabinding/version2/ThresholdLine.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/Tree.java
b/src/jalview/schemabinding/version2/Tree.java
index
498e29f
..
3a3c8db
100755
(executable)
--- a/
src/jalview/schemabinding/version2/Tree.java
+++ b/
src/jalview/schemabinding/version2/Tree.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/UserColourScheme.java
b/src/jalview/schemabinding/version2/UserColourScheme.java
index
28c415f
..
a18b305
100755
(executable)
--- a/
src/jalview/schemabinding/version2/UserColourScheme.java
+++ b/
src/jalview/schemabinding/version2/UserColourScheme.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/UserColours.java
b/src/jalview/schemabinding/version2/UserColours.java
index
12356b5
..
cba2150
100755
(executable)
--- a/
src/jalview/schemabinding/version2/UserColours.java
+++ b/
src/jalview/schemabinding/version2/UserColours.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/VAMSAS.java
b/src/jalview/schemabinding/version2/VAMSAS.java
index
a0b3460
..
699f47d
100755
(executable)
--- a/
src/jalview/schemabinding/version2/VAMSAS.java
+++ b/
src/jalview/schemabinding/version2/VAMSAS.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/VamsasModel.java
b/src/jalview/schemabinding/version2/VamsasModel.java
index
d76cc82
..
6c45ca3
100755
(executable)
--- a/
src/jalview/schemabinding/version2/VamsasModel.java
+++ b/
src/jalview/schemabinding/version2/VamsasModel.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/Viewport.java
b/src/jalview/schemabinding/version2/Viewport.java
index
3cfdb3e
..
8f694b6
100755
(executable)
--- a/
src/jalview/schemabinding/version2/Viewport.java
+++ b/
src/jalview/schemabinding/version2/Viewport.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/WebServiceParameterSet.java
b/src/jalview/schemabinding/version2/WebServiceParameterSet.java
index
6c7c211
..
a119538
100644
(file)
--- a/
src/jalview/schemabinding/version2/WebServiceParameterSet.java
+++ b/
src/jalview/schemabinding/version2/WebServiceParameterSet.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/AlcodMapDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/AlcodMapDescriptor.java
index
23cf8cb
..
a81c837
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/AlcodMapDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/AlcodMapDescriptor.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/descriptors/AlcodonDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/AlcodonDescriptor.java
index
f3b49b8
..
85319a8
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/AlcodonDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/AlcodonDescriptor.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/descriptors/AlcodonFrameDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/AlcodonFrameDescriptor.java
index
5c646ca
..
ca1ca1d
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/AlcodonFrameDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/AlcodonFrameDescriptor.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/descriptors/AnnotationColoursDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/AnnotationColoursDescriptor.java
index
5a703c3
..
441866d
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/AnnotationColoursDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/AnnotationColoursDescriptor.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/descriptors/AnnotationDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/AnnotationDescriptor.java
index
c30ef18
..
40e44e6
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/AnnotationDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/AnnotationDescriptor.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/descriptors/AnnotationElementDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/AnnotationElementDescriptor.java
index
2c3343b
..
5fb2594
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/AnnotationElementDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/AnnotationElementDescriptor.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/descriptors/ColourDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/ColourDescriptor.java
index
bd14d09
..
1d1bb0e
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/ColourDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/ColourDescriptor.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/descriptors/DBRefDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/DBRefDescriptor.java
index
58c088b
..
0f7bbd8
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/DBRefDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/DBRefDescriptor.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/descriptors/FeatureDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/FeatureDescriptor.java
index
e50fc8c
..
f80b2a7
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/FeatureDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/FeatureDescriptor.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/descriptors/FeatureSettingsDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/FeatureSettingsDescriptor.java
index
8111b37
..
4dec690
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/FeatureSettingsDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/FeatureSettingsDescriptor.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/descriptors/FeaturesDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/FeaturesDescriptor.java
index
c6d3ee2
..
f23fa7d
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/FeaturesDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/FeaturesDescriptor.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/descriptors/GroupDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/GroupDescriptor.java
index
a4a74e2
..
7e4759e
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/GroupDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/GroupDescriptor.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/descriptors/HiddenColumnsDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/HiddenColumnsDescriptor.java
index
1b4933b
..
eed1e62
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/HiddenColumnsDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/HiddenColumnsDescriptor.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/descriptors/JGroupDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/JGroupDescriptor.java
index
08b9aea
..
2260eda
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/JGroupDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/JGroupDescriptor.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/descriptors/JSeqDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/JSeqDescriptor.java
index
b33eda7
..
cee8380
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/JSeqDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/JSeqDescriptor.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/descriptors/JalviewModelDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/JalviewModelDescriptor.java
index
4480ea9
..
9d82d42
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/JalviewModelDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/JalviewModelDescriptor.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/descriptors/JalviewModelSequenceDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/JalviewModelSequenceDescriptor.java
index
4ea81bc
..
9d0a437
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/JalviewModelSequenceDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/JalviewModelSequenceDescriptor.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/descriptors/JalviewUserColoursDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/JalviewUserColoursDescriptor.java
index
92537b5
..
2672784
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/JalviewUserColoursDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/JalviewUserColoursDescriptor.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/descriptors/MapListFromDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/MapListFromDescriptor.java
index
d83357c
..
c19ccee
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/MapListFromDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/MapListFromDescriptor.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/descriptors/MapListToDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/MapListToDescriptor.java
index
70ce324
..
ee172db
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/MapListToDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/MapListToDescriptor.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/descriptors/MapListTypeDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/MapListTypeDescriptor.java
index
858753f
..
63eeb1f
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/MapListTypeDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/MapListTypeDescriptor.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/descriptors/MappingChoiceDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/MappingChoiceDescriptor.java
index
92aac5e
..
c524757
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/MappingChoiceDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/MappingChoiceDescriptor.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/descriptors/MappingDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/MappingDescriptor.java
index
9c748cf
..
5f2329e
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/MappingDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/MappingDescriptor.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/descriptors/OtherDataDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/OtherDataDescriptor.java
index
4e49c36
..
8b65077
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/OtherDataDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/OtherDataDescriptor.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/descriptors/PdbentryDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/PdbentryDescriptor.java
index
f892f79
..
3de932a
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/PdbentryDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/PdbentryDescriptor.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/descriptors/PdbentryItemDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/PdbentryItemDescriptor.java
index
0a043d7
..
4c17a6d
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/PdbentryItemDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/PdbentryItemDescriptor.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/descriptors/PdbidsDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/PdbidsDescriptor.java
index
cf746cd
..
b90da29
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/PdbidsDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/PdbidsDescriptor.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/descriptors/PropertyDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/PropertyDescriptor.java
index
0e27e21
..
1ebfb28
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/PropertyDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/PropertyDescriptor.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/descriptors/SequenceDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/SequenceDescriptor.java
index
07a6181
..
79802cc
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/SequenceDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/SequenceDescriptor.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/descriptors/SequenceSetDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/SequenceSetDescriptor.java
index
ab0d2b8
..
a78d706
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/SequenceSetDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/SequenceSetDescriptor.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/descriptors/SequenceSetPropertiesDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/SequenceSetPropertiesDescriptor.java
index
11a25fb
..
c9b1fc3
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/SequenceSetPropertiesDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/SequenceSetPropertiesDescriptor.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/descriptors/SequenceTypeDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/SequenceTypeDescriptor.java
index
5554046
..
b42e31f
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/SequenceTypeDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/SequenceTypeDescriptor.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/descriptors/SettingDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/SettingDescriptor.java
index
ca375af
..
a5149a2
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/SettingDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/SettingDescriptor.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/descriptors/StructureStateDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/StructureStateDescriptor.java
index
09171ea
..
d0da6e4
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/StructureStateDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/StructureStateDescriptor.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/descriptors/ThresholdLineDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/ThresholdLineDescriptor.java
index
c683978
..
69ea4f0
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/ThresholdLineDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/ThresholdLineDescriptor.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/descriptors/TreeDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/TreeDescriptor.java
index
9d70d62
..
fa2f2f8
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/TreeDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/TreeDescriptor.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/descriptors/UserColourSchemeDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/UserColourSchemeDescriptor.java
index
eb93e57
..
c657db5
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/UserColourSchemeDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/UserColourSchemeDescriptor.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/descriptors/UserColoursDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/UserColoursDescriptor.java
index
e98dffb
..
fbfa0c8
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/UserColoursDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/UserColoursDescriptor.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/descriptors/VAMSASDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/VAMSASDescriptor.java
index
b46ab62
..
a0d1089
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/VAMSASDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/VAMSASDescriptor.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/descriptors/VamsasModelDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/VamsasModelDescriptor.java
index
9b25bae
..
6f0411d
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/VamsasModelDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/VamsasModelDescriptor.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/descriptors/ViewportDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/ViewportDescriptor.java
index
254b785
..
86b43f7
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/ViewportDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/ViewportDescriptor.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemabinding/version2/descriptors/WebServiceParameterSetDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/WebServiceParameterSetDescriptor.java
index
bf029a2
..
0ebd03b
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/WebServiceParameterSetDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/WebServiceParameterSetDescriptor.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/AnnotationColourGradient.java
b/src/jalview/schemes/AnnotationColourGradient.java
index
36c1f95
..
911f084
100755
(executable)
--- a/
src/jalview/schemes/AnnotationColourGradient.java
+++ b/
src/jalview/schemes/AnnotationColourGradient.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/Blosum62ColourScheme.java
b/src/jalview/schemes/Blosum62ColourScheme.java
index
0a943bd
..
0e6ae0c
100755
(executable)
--- a/
src/jalview/schemes/Blosum62ColourScheme.java
+++ b/
src/jalview/schemes/Blosum62ColourScheme.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/BuriedColourScheme.java
b/src/jalview/schemes/BuriedColourScheme.java
index
b92b5dd
..
f590a8a
100755
(executable)
--- a/
src/jalview/schemes/BuriedColourScheme.java
+++ b/
src/jalview/schemes/BuriedColourScheme.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/ClustalxColourScheme.java
b/src/jalview/schemes/ClustalxColourScheme.java
index
8822567
..
74a87e6
100755
(executable)
--- a/
src/jalview/schemes/ClustalxColourScheme.java
+++ b/
src/jalview/schemes/ClustalxColourScheme.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/ColourSchemeI.java
b/src/jalview/schemes/ColourSchemeI.java
index
009ab0b
..
fb8faab
100755
(executable)
--- a/
src/jalview/schemes/ColourSchemeI.java
+++ b/
src/jalview/schemes/ColourSchemeI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/ColourSchemeProperty.java
b/src/jalview/schemes/ColourSchemeProperty.java
index
f50ac0a
..
3147380
100755
(executable)
--- a/
src/jalview/schemes/ColourSchemeProperty.java
+++ b/
src/jalview/schemes/ColourSchemeProperty.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/Consensus.java
b/src/jalview/schemes/Consensus.java
index
d3942df
..
0e746d4
100755
(executable)
--- a/
src/jalview/schemes/Consensus.java
+++ b/
src/jalview/schemes/Consensus.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/GraduatedColor.java
b/src/jalview/schemes/GraduatedColor.java
index
68b0c1a
..
8164ff0
100644
(file)
--- a/
src/jalview/schemes/GraduatedColor.java
+++ b/
src/jalview/schemes/GraduatedColor.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/HelixColourScheme.java
b/src/jalview/schemes/HelixColourScheme.java
index
0fa96e5
..
3d12999
100755
(executable)
--- a/
src/jalview/schemes/HelixColourScheme.java
+++ b/
src/jalview/schemes/HelixColourScheme.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/HydrophobicColourScheme.java
b/src/jalview/schemes/HydrophobicColourScheme.java
index
56a00ca
..
fb8d4ad
100755
(executable)
--- a/
src/jalview/schemes/HydrophobicColourScheme.java
+++ b/
src/jalview/schemes/HydrophobicColourScheme.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/NucleotideColourScheme.java
b/src/jalview/schemes/NucleotideColourScheme.java
index
27d4ce3
..
9d4828c
100755
(executable)
--- a/
src/jalview/schemes/NucleotideColourScheme.java
+++ b/
src/jalview/schemes/NucleotideColourScheme.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/PIDColourScheme.java
b/src/jalview/schemes/PIDColourScheme.java
index
f088bc5
..
9831f9d
100755
(executable)
--- a/
src/jalview/schemes/PIDColourScheme.java
+++ b/
src/jalview/schemes/PIDColourScheme.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/ResidueColourScheme.java
b/src/jalview/schemes/ResidueColourScheme.java
index
788124c
..
491f571
100755
(executable)
--- a/
src/jalview/schemes/ResidueColourScheme.java
+++ b/
src/jalview/schemes/ResidueColourScheme.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/ResidueProperties.java
b/src/jalview/schemes/ResidueProperties.java
index
9115681
..
18c3d32
100755
(executable)
--- a/
src/jalview/schemes/ResidueProperties.java
+++ b/
src/jalview/schemes/ResidueProperties.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/ScoreColourScheme.java
b/src/jalview/schemes/ScoreColourScheme.java
index
fd6b9fb
..
58a523c
100755
(executable)
--- a/
src/jalview/schemes/ScoreColourScheme.java
+++ b/
src/jalview/schemes/ScoreColourScheme.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/ScoreMatrix.java
b/src/jalview/schemes/ScoreMatrix.java
index
e38b805
..
82e070e
100644
(file)
--- a/
src/jalview/schemes/ScoreMatrix.java
+++ b/
src/jalview/schemes/ScoreMatrix.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/schemes/StrandColourScheme.java
b/src/jalview/schemes/StrandColourScheme.java
index
989093c
..
d205ee0
100755
(executable)
--- a/
src/jalview/schemes/StrandColourScheme.java
+++ b/
src/jalview/schemes/StrandColourScheme.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/TaylorColourScheme.java
b/src/jalview/schemes/TaylorColourScheme.java
index
82be5cf
..
9bad32a
100755
(executable)
--- a/
src/jalview/schemes/TaylorColourScheme.java
+++ b/
src/jalview/schemes/TaylorColourScheme.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/TurnColourScheme.java
b/src/jalview/schemes/TurnColourScheme.java
index
61342f8
..
3e825be
100755
(executable)
--- a/
src/jalview/schemes/TurnColourScheme.java
+++ b/
src/jalview/schemes/TurnColourScheme.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/UserColourScheme.java
b/src/jalview/schemes/UserColourScheme.java
index
9b01332
..
c46393f
100755
(executable)
--- a/
src/jalview/schemes/UserColourScheme.java
+++ b/
src/jalview/schemes/UserColourScheme.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/ZappoColourScheme.java
b/src/jalview/schemes/ZappoColourScheme.java
index
4d8c03f
..
a28cebe
100755
(executable)
--- a/
src/jalview/schemes/ZappoColourScheme.java
+++ b/
src/jalview/schemes/ZappoColourScheme.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/structure/SelectionListener.java
b/src/jalview/structure/SelectionListener.java
index
40a9b59
..
d739f92
100644
(file)
--- a/
src/jalview/structure/SelectionListener.java
+++ b/
src/jalview/structure/SelectionListener.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/structure/SelectionSource.java
b/src/jalview/structure/SelectionSource.java
index
68c5afa
..
7cf8a73
100644
(file)
--- a/
src/jalview/structure/SelectionSource.java
+++ b/
src/jalview/structure/SelectionSource.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/structure/SequenceListener.java
b/src/jalview/structure/SequenceListener.java
index
cba1217
..
4df554e
100644
(file)
--- a/
src/jalview/structure/SequenceListener.java
+++ b/
src/jalview/structure/SequenceListener.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/structure/StructureListener.java
b/src/jalview/structure/StructureListener.java
index
60357cd
..
9b45726
100644
(file)
--- a/
src/jalview/structure/StructureListener.java
+++ b/
src/jalview/structure/StructureListener.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/structure/StructureMapping.java
b/src/jalview/structure/StructureMapping.java
index
14ec229
..
26f1469
100644
(file)
--- a/
src/jalview/structure/StructureMapping.java
+++ b/
src/jalview/structure/StructureMapping.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/structure/StructureSelectionManager.java
b/src/jalview/structure/StructureSelectionManager.java
index
e2cf3c9
..
c4c43db
100644
(file)
--- a/
src/jalview/structure/StructureSelectionManager.java
+++ b/
src/jalview/structure/StructureSelectionManager.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/structure/VamsasListener.java
b/src/jalview/structure/VamsasListener.java
index
fa1f13e
..
bb6cb98
100644
(file)
--- a/
src/jalview/structure/VamsasListener.java
+++ b/
src/jalview/structure/VamsasListener.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/util/AWTConsole.java
b/src/jalview/util/AWTConsole.java
index
14f23a9
..
381c5c6
100644
(file)
--- a/
src/jalview/util/AWTConsole.java
+++ b/
src/jalview/util/AWTConsole.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/util/BrowserLauncher.java
b/src/jalview/util/BrowserLauncher.java
index
540c521
..
f85676d
100755
(executable)
--- a/
src/jalview/util/BrowserLauncher.java
+++ b/
src/jalview/util/BrowserLauncher.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/util/Comparison.java
b/src/jalview/util/Comparison.java
index
32e049d
..
afc6706
100755
(executable)
--- a/
src/jalview/util/Comparison.java
+++ b/
src/jalview/util/Comparison.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/util/DBRefUtils.java
b/src/jalview/util/DBRefUtils.java
index
b772305
..
5bc1629
100755
(executable)
--- a/
src/jalview/util/DBRefUtils.java
+++ b/
src/jalview/util/DBRefUtils.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/util/Format.java
b/src/jalview/util/Format.java
index
97a97ac
..
7b309a0
100755
(executable)
--- a/
src/jalview/util/Format.java
+++ b/
src/jalview/util/Format.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/util/GroupUrlLink.java
b/src/jalview/util/GroupUrlLink.java
index
fccf3a4
..
1978489
100644
(file)
--- a/
src/jalview/util/GroupUrlLink.java
+++ b/
src/jalview/util/GroupUrlLink.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/util/ImageMaker.java
b/src/jalview/util/ImageMaker.java
index
01632c9
..
45607f3
100755
(executable)
--- a/
src/jalview/util/ImageMaker.java
+++ b/
src/jalview/util/ImageMaker.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/util/MapList.java
b/src/jalview/util/MapList.java
index
4802d8c
..
99db9bf
100644
(file)
--- a/
src/jalview/util/MapList.java
+++ b/
src/jalview/util/MapList.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/util/Platform.java
b/src/jalview/util/Platform.java
index
d12560e
..
bc6eb18
100644
(file)
--- a/
src/jalview/util/Platform.java
+++ b/
src/jalview/util/Platform.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/util/QuickSort.java
b/src/jalview/util/QuickSort.java
index
1e3e5c1
..
f6570b2
100755
(executable)
--- a/
src/jalview/util/QuickSort.java
+++ b/
src/jalview/util/QuickSort.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/util/ShiftList.java
b/src/jalview/util/ShiftList.java
index
7b13045
..
a8e1a69
100644
(file)
--- a/
src/jalview/util/ShiftList.java
+++ b/
src/jalview/util/ShiftList.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/util/TableSorter.java
b/src/jalview/util/TableSorter.java
index
495fb21
..
2668218
100755
(executable)
--- a/
src/jalview/util/TableSorter.java
+++ b/
src/jalview/util/TableSorter.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/util/UrlLink.java
b/src/jalview/util/UrlLink.java
index
52a8140
..
3903b2f
100644
(file)
--- a/
src/jalview/util/UrlLink.java
+++ b/
src/jalview/util/UrlLink.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/util/jarInputStreamProvider.java
b/src/jalview/util/jarInputStreamProvider.java
index
8357269
..
91a4165
100644
(file)
--- a/
src/jalview/util/jarInputStreamProvider.java
+++ b/
src/jalview/util/jarInputStreamProvider.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/ws/AWSThread.java
b/src/jalview/ws/AWSThread.java
index
a40d27a
..
e537b0a
100644
(file)
--- a/
src/jalview/ws/AWSThread.java
+++ b/
src/jalview/ws/AWSThread.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/AWsJob.java
b/src/jalview/ws/AWsJob.java
index
e653539
..
78a13bf
100644
(file)
--- a/
src/jalview/ws/AWsJob.java
+++ b/
src/jalview/ws/AWsJob.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/DBRefFetcher.java
b/src/jalview/ws/DBRefFetcher.java
index
c1fe276
..
1fb5606
100644
(file)
--- a/
src/jalview/ws/DBRefFetcher.java
+++ b/
src/jalview/ws/DBRefFetcher.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/ws/DasSequenceFeatureFetcher.java
b/src/jalview/ws/DasSequenceFeatureFetcher.java
index
4262f7e
..
94e8b19
100644
(file)
--- a/
src/jalview/ws/DasSequenceFeatureFetcher.java
+++ b/
src/jalview/ws/DasSequenceFeatureFetcher.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/ws/EnfinEnvision2OneWay.java
b/src/jalview/ws/EnfinEnvision2OneWay.java
index
6a9371b
..
fcd5450
100644
(file)
--- a/
src/jalview/ws/EnfinEnvision2OneWay.java
+++ b/
src/jalview/ws/EnfinEnvision2OneWay.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/JobStateSummary.java
b/src/jalview/ws/JobStateSummary.java
index
62f172d
..
39452ee
100644
(file)
--- a/
src/jalview/ws/JobStateSummary.java
+++ b/
src/jalview/ws/JobStateSummary.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/SequenceFetcher.java
b/src/jalview/ws/SequenceFetcher.java
index
fa58a2c
..
067212e
100644
(file)
--- a/
src/jalview/ws/SequenceFetcher.java
+++ b/
src/jalview/ws/SequenceFetcher.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/ws/WSClient.java
b/src/jalview/ws/WSClient.java
index
d89ab73
..
27b1ebc
100755
(executable)
--- a/
src/jalview/ws/WSClient.java
+++ b/
src/jalview/ws/WSClient.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/WSClientI.java
b/src/jalview/ws/WSClientI.java
index
f6d0de3
..
5c8e526
100755
(executable)
--- a/
src/jalview/ws/WSClientI.java
+++ b/
src/jalview/ws/WSClientI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/WSMenuEntryProviderI.java
b/src/jalview/ws/WSMenuEntryProviderI.java
index
b7aa0ba
..
25e6620
100644
(file)
--- a/
src/jalview/ws/WSMenuEntryProviderI.java
+++ b/
src/jalview/ws/WSMenuEntryProviderI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/dbsources/DasSequenceSource.java
b/src/jalview/ws/dbsources/DasSequenceSource.java
index
da48d57
..
bb9c7a0
100644
(file)
--- a/
src/jalview/ws/dbsources/DasSequenceSource.java
+++ b/
src/jalview/ws/dbsources/DasSequenceSource.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/ws/dbsources/EbiFileRetrievedProxy.java
b/src/jalview/ws/dbsources/EbiFileRetrievedProxy.java
index
bc3c7b2
..
e679089
100644
(file)
--- a/
src/jalview/ws/dbsources/EbiFileRetrievedProxy.java
+++ b/
src/jalview/ws/dbsources/EbiFileRetrievedProxy.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/ws/dbsources/EmblCdsSouce.java
b/src/jalview/ws/dbsources/EmblCdsSouce.java
index
2683ba4
..
8ecf200
100644
(file)
--- a/
src/jalview/ws/dbsources/EmblCdsSouce.java
+++ b/
src/jalview/ws/dbsources/EmblCdsSouce.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/ws/dbsources/EmblSource.java
b/src/jalview/ws/dbsources/EmblSource.java
index
007ae52
..
f578cb7
100644
(file)
--- a/
src/jalview/ws/dbsources/EmblSource.java
+++ b/
src/jalview/ws/dbsources/EmblSource.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/ws/dbsources/EmblXmlSource.java
b/src/jalview/ws/dbsources/EmblXmlSource.java
index
baffc6d
..
46b063a
100644
(file)
--- a/
src/jalview/ws/dbsources/EmblXmlSource.java
+++ b/
src/jalview/ws/dbsources/EmblXmlSource.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/ws/dbsources/GeneDbSource.java
b/src/jalview/ws/dbsources/GeneDbSource.java
index
06e1164
..
cef126c
100644
(file)
--- a/
src/jalview/ws/dbsources/GeneDbSource.java
+++ b/
src/jalview/ws/dbsources/GeneDbSource.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/ws/dbsources/Pdb.java
b/src/jalview/ws/dbsources/Pdb.java
index
ae1f794
..
f02539c
100644
(file)
--- a/
src/jalview/ws/dbsources/Pdb.java
+++ b/
src/jalview/ws/dbsources/Pdb.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/ws/dbsources/Pfam.java
b/src/jalview/ws/dbsources/Pfam.java
index
834dd12
..
8b62328
100644
(file)
--- a/
src/jalview/ws/dbsources/Pfam.java
+++ b/
src/jalview/ws/dbsources/Pfam.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/ws/dbsources/PfamFull.java
b/src/jalview/ws/dbsources/PfamFull.java
index
a32068b
..
ba42526
100644
(file)
--- a/
src/jalview/ws/dbsources/PfamFull.java
+++ b/
src/jalview/ws/dbsources/PfamFull.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/ws/dbsources/PfamSeed.java
b/src/jalview/ws/dbsources/PfamSeed.java
index
3e1eced
..
cb7903d
100644
(file)
--- a/
src/jalview/ws/dbsources/PfamSeed.java
+++ b/
src/jalview/ws/dbsources/PfamSeed.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/ws/dbsources/Uniprot.java
b/src/jalview/ws/dbsources/Uniprot.java
index
e599b33
..
b789a62
100644
(file)
--- a/
src/jalview/ws/dbsources/Uniprot.java
+++ b/
src/jalview/ws/dbsources/Uniprot.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/dbsources/UnprotName.java
b/src/jalview/ws/dbsources/UnprotName.java
index
a79bcda
..
5733df7
100644
(file)
--- a/
src/jalview/ws/dbsources/UnprotName.java
+++ b/
src/jalview/ws/dbsources/UnprotName.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/ws/dbsources/das/DasSequenceSourceListener.java
b/src/jalview/ws/dbsources/das/DasSequenceSourceListener.java
index
e5c7c38
..
193a73a
100644
(file)
--- a/
src/jalview/ws/dbsources/das/DasSequenceSourceListener.java
+++ b/
src/jalview/ws/dbsources/das/DasSequenceSourceListener.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/ws/ebi/EBIFetchClient.java
b/src/jalview/ws/ebi/EBIFetchClient.java
index
efb2739
..
65e008a
100644
(file)
--- a/
src/jalview/ws/ebi/EBIFetchClient.java
+++ b/
src/jalview/ws/ebi/EBIFetchClient.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/ws/jws1/Discoverer.java
b/src/jalview/ws/jws1/Discoverer.java
index
c8b1cda
..
854ac19
100644
(file)
--- a/
src/jalview/ws/jws1/Discoverer.java
+++ b/
src/jalview/ws/jws1/Discoverer.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws1/JPredClient.java
b/src/jalview/ws/jws1/JPredClient.java
index
8fff195
..
dc9e04e
100644
(file)
--- a/
src/jalview/ws/jws1/JPredClient.java
+++ b/
src/jalview/ws/jws1/JPredClient.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws1/JPredThread.java
b/src/jalview/ws/jws1/JPredThread.java
index
98f2645
..
956fccd
100644
(file)
--- a/
src/jalview/ws/jws1/JPredThread.java
+++ b/
src/jalview/ws/jws1/JPredThread.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws1/JWS1Thread.java
b/src/jalview/ws/jws1/JWS1Thread.java
index
0d578c6
..
5777382
100644
(file)
--- a/
src/jalview/ws/jws1/JWS1Thread.java
+++ b/
src/jalview/ws/jws1/JWS1Thread.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws1/MsaWSClient.java
b/src/jalview/ws/jws1/MsaWSClient.java
index
a5f1216
..
9be18ca
100644
(file)
--- a/
src/jalview/ws/jws1/MsaWSClient.java
+++ b/
src/jalview/ws/jws1/MsaWSClient.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws1/MsaWSThread.java
b/src/jalview/ws/jws1/MsaWSThread.java
index
3eca137
..
6b8781b
100644
(file)
--- a/
src/jalview/ws/jws1/MsaWSThread.java
+++ b/
src/jalview/ws/jws1/MsaWSThread.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws1/SeqSearchWSClient.java
b/src/jalview/ws/jws1/SeqSearchWSClient.java
index
c344967
..
902d44a
100644
(file)
--- a/
src/jalview/ws/jws1/SeqSearchWSClient.java
+++ b/
src/jalview/ws/jws1/SeqSearchWSClient.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws1/SeqSearchWSThread.java
b/src/jalview/ws/jws1/SeqSearchWSThread.java
index
99a8d03
..
512ff18
100644
(file)
--- a/
src/jalview/ws/jws1/SeqSearchWSThread.java
+++ b/
src/jalview/ws/jws1/SeqSearchWSThread.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws1/WS1Client.java
b/src/jalview/ws/jws1/WS1Client.java
index
f05585d
..
846a59b
100644
(file)
--- a/
src/jalview/ws/jws1/WS1Client.java
+++ b/
src/jalview/ws/jws1/WS1Client.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws1/WSJob.java
b/src/jalview/ws/jws1/WSJob.java
index
e542c3f
..
6ca09af
100644
(file)
--- a/
src/jalview/ws/jws1/WSJob.java
+++ b/
src/jalview/ws/jws1/WSJob.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/AWS2Thread.java
b/src/jalview/ws/jws2/AWS2Thread.java
index
a33e90c
..
959d570
100644
(file)
--- a/
src/jalview/ws/jws2/AWS2Thread.java
+++ b/
src/jalview/ws/jws2/AWS2Thread.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/JWs2Job.java
b/src/jalview/ws/jws2/JWs2Job.java
index
bbc0604
..
99d732a
100644
(file)
--- a/
src/jalview/ws/jws2/JWs2Job.java
+++ b/
src/jalview/ws/jws2/JWs2Job.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/JabaParamStore.java
b/src/jalview/ws/jws2/JabaParamStore.java
index
526c5b0
..
0adae22
100644
(file)
--- a/
src/jalview/ws/jws2/JabaParamStore.java
+++ b/
src/jalview/ws/jws2/JabaParamStore.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/JabaPreset.java
b/src/jalview/ws/jws2/JabaPreset.java
index
c86a790
..
dd52878
100644
(file)
--- a/
src/jalview/ws/jws2/JabaPreset.java
+++ b/
src/jalview/ws/jws2/JabaPreset.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/JabaWsServerQuery.java
b/src/jalview/ws/jws2/JabaWsServerQuery.java
index
2799e98
..
0e1ec72
100644
(file)
--- a/
src/jalview/ws/jws2/JabaWsServerQuery.java
+++ b/
src/jalview/ws/jws2/JabaWsServerQuery.java
@@
-1,5
+1,19
@@
-/**
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
+ * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
*
*
+ * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
*/
package jalview.ws.jws2;
*/
package jalview.ws.jws2;
diff --git
a/src/jalview/ws/jws2/Jws2Client.java
b/src/jalview/ws/jws2/Jws2Client.java
index
a9ca8f0
..
6557c6c
100644
(file)
--- a/
src/jalview/ws/jws2/Jws2Client.java
+++ b/
src/jalview/ws/jws2/Jws2Client.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/Jws2Discoverer.java
b/src/jalview/ws/jws2/Jws2Discoverer.java
index
198f01d
..
f800801
100644
(file)
--- a/
src/jalview/ws/jws2/Jws2Discoverer.java
+++ b/
src/jalview/ws/jws2/Jws2Discoverer.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/MsaWSClient.java
b/src/jalview/ws/jws2/MsaWSClient.java
index
8a352bf
..
a1d422d
100644
(file)
--- a/
src/jalview/ws/jws2/MsaWSClient.java
+++ b/
src/jalview/ws/jws2/MsaWSClient.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/MsaWSThread.java
b/src/jalview/ws/jws2/MsaWSThread.java
index
bd86bf0
..
69b4be7
100644
(file)
--- a/
src/jalview/ws/jws2/MsaWSThread.java
+++ b/
src/jalview/ws/jws2/MsaWSThread.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/ParameterUtils.java
b/src/jalview/ws/jws2/ParameterUtils.java
index
1f76462
..
23fbdb1
100644
(file)
--- a/
src/jalview/ws/jws2/ParameterUtils.java
+++ b/
src/jalview/ws/jws2/ParameterUtils.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/dm/JabaOption.java
b/src/jalview/ws/jws2/dm/JabaOption.java
index
be4912b
..
ebfb850
100644
(file)
--- a/
src/jalview/ws/jws2/dm/JabaOption.java
+++ b/
src/jalview/ws/jws2/dm/JabaOption.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/dm/JabaParameter.java
b/src/jalview/ws/jws2/dm/JabaParameter.java
index
36abdcc
..
fce016a
100644
(file)
--- a/
src/jalview/ws/jws2/dm/JabaParameter.java
+++ b/
src/jalview/ws/jws2/dm/JabaParameter.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/dm/JabaValueConstrain.java
b/src/jalview/ws/jws2/dm/JabaValueConstrain.java
index
f3e3930
..
12cf1eb
100644
(file)
--- a/
src/jalview/ws/jws2/dm/JabaValueConstrain.java
+++ b/
src/jalview/ws/jws2/dm/JabaValueConstrain.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/dm/JabaWsParamSet.java
b/src/jalview/ws/jws2/dm/JabaWsParamSet.java
index
deede07
..
2c1c74f
100644
(file)
--- a/
src/jalview/ws/jws2/dm/JabaWsParamSet.java
+++ b/
src/jalview/ws/jws2/dm/JabaWsParamSet.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/params/ArgumentI.java
b/src/jalview/ws/params/ArgumentI.java
index
2f42838
..
682bd6f
100644
(file)
--- a/
src/jalview/ws/params/ArgumentI.java
+++ b/
src/jalview/ws/params/ArgumentI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/params/OptionI.java
b/src/jalview/ws/params/OptionI.java
index
f908f4d
..
9461839
100644
(file)
--- a/
src/jalview/ws/params/OptionI.java
+++ b/
src/jalview/ws/params/OptionI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/params/ParamDatastoreI.java
b/src/jalview/ws/params/ParamDatastoreI.java
index
77647d4
..
72f4028
100644
(file)
--- a/
src/jalview/ws/params/ParamDatastoreI.java
+++ b/
src/jalview/ws/params/ParamDatastoreI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/params/ParamManager.java
b/src/jalview/ws/params/ParamManager.java
index
5de608b
..
dc5c8c1
100644
(file)
--- a/
src/jalview/ws/params/ParamManager.java
+++ b/
src/jalview/ws/params/ParamManager.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/params/ParameterI.java
b/src/jalview/ws/params/ParameterI.java
index
6e69d56
..
76427bd
100644
(file)
--- a/
src/jalview/ws/params/ParameterI.java
+++ b/
src/jalview/ws/params/ParameterI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/params/ValueConstrainI.java
b/src/jalview/ws/params/ValueConstrainI.java
index
fa24ba0
..
3c6fda8
100644
(file)
--- a/
src/jalview/ws/params/ValueConstrainI.java
+++ b/
src/jalview/ws/params/ValueConstrainI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/params/WsParamSetI.java
b/src/jalview/ws/params/WsParamSetI.java
index
781aa0d
..
27d9753
100644
(file)
--- a/
src/jalview/ws/params/WsParamSetI.java
+++ b/
src/jalview/ws/params/WsParamSetI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/seqfetcher/ASequenceFetcher.java
b/src/jalview/ws/seqfetcher/ASequenceFetcher.java
index
1baa58b
..
391aa05
100644
(file)
--- a/
src/jalview/ws/seqfetcher/ASequenceFetcher.java
+++ b/
src/jalview/ws/seqfetcher/ASequenceFetcher.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/ws/seqfetcher/DbSourceProxy.java
b/src/jalview/ws/seqfetcher/DbSourceProxy.java
index
9c5356a
..
6e9418b
100644
(file)
--- a/
src/jalview/ws/seqfetcher/DbSourceProxy.java
+++ b/
src/jalview/ws/seqfetcher/DbSourceProxy.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/jalview/ws/seqfetcher/DbSourceProxyImpl.java
b/src/jalview/ws/seqfetcher/DbSourceProxyImpl.java
index
44de157
..
8b2dba0
100644
(file)
--- a/
src/jalview/ws/seqfetcher/DbSourceProxyImpl.java
+++ b/
src/jalview/ws/seqfetcher/DbSourceProxyImpl.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/uk/ac/ebi/picr/model/CrossReference.java
b/src/uk/ac/ebi/picr/model/CrossReference.java
index
7996f02
..
d4db577
100644
(file)
--- a/
src/uk/ac/ebi/picr/model/CrossReference.java
+++ b/
src/uk/ac/ebi/picr/model/CrossReference.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/uk/ac/ebi/picr/model/CrossReference_Helper.java
b/src/uk/ac/ebi/picr/model/CrossReference_Helper.java
index
884e190
..
9e479fa
100644
(file)
--- a/
src/uk/ac/ebi/picr/model/CrossReference_Helper.java
+++ b/
src/uk/ac/ebi/picr/model/CrossReference_Helper.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/uk/ac/ebi/picr/model/UPEntry.java
b/src/uk/ac/ebi/picr/model/UPEntry.java
index
5855186
..
edca2a5
100644
(file)
--- a/
src/uk/ac/ebi/picr/model/UPEntry.java
+++ b/
src/uk/ac/ebi/picr/model/UPEntry.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/uk/ac/ebi/picr/model/UPEntry_Helper.java
b/src/uk/ac/ebi/picr/model/UPEntry_Helper.java
index
3348640
..
e268bf2
100644
(file)
--- a/
src/uk/ac/ebi/picr/model/UPEntry_Helper.java
+++ b/
src/uk/ac/ebi/picr/model/UPEntry_Helper.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/uk/ac/ebi/www/Data.java
b/src/uk/ac/ebi/www/Data.java
index
46d8507
..
e5270bb
100755
(executable)
--- a/
src/uk/ac/ebi/www/Data.java
+++ b/
src/uk/ac/ebi/www/Data.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/uk/ac/ebi/www/InputParams.java
b/src/uk/ac/ebi/www/InputParams.java
index
fe546ea
..
77aecc4
100755
(executable)
--- a/
src/uk/ac/ebi/www/InputParams.java
+++ b/
src/uk/ac/ebi/www/InputParams.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/uk/ac/ebi/www/WSFile.java
b/src/uk/ac/ebi/www/WSFile.java
index
b57b04b
..
3d47cf0
100755
(executable)
--- a/
src/uk/ac/ebi/www/WSFile.java
+++ b/
src/uk/ac/ebi/www/WSFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/uk/ac/ebi/www/WSWUBlast.java
b/src/uk/ac/ebi/www/WSWUBlast.java
index
81ba67b
..
e321075
100755
(executable)
--- a/
src/uk/ac/ebi/www/WSWUBlast.java
+++ b/
src/uk/ac/ebi/www/WSWUBlast.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/uk/ac/ebi/www/WSWUBlastService.java
b/src/uk/ac/ebi/www/WSWUBlastService.java
index
8c43600
..
82071ed
100755
(executable)
--- a/
src/uk/ac/ebi/www/WSWUBlastService.java
+++ b/
src/uk/ac/ebi/www/WSWUBlastService.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/uk/ac/ebi/www/WSWUBlastServiceLocator.java
b/src/uk/ac/ebi/www/WSWUBlastServiceLocator.java
index
d70121c
..
669441c
100755
(executable)
--- a/
src/uk/ac/ebi/www/WSWUBlastServiceLocator.java
+++ b/
src/uk/ac/ebi/www/WSWUBlastServiceLocator.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/uk/ac/ebi/www/WSWUBlastSoapBindingStub.java
b/src/uk/ac/ebi/www/WSWUBlastSoapBindingStub.java
index
ab9dabf
..
8f99c9f
100755
(executable)
--- a/
src/uk/ac/ebi/www/WSWUBlastSoapBindingStub.java
+++ b/
src/uk/ac/ebi/www/WSWUBlastSoapBindingStub.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperBindingStub.java
b/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperBindingStub.java
index
0091add
..
cba3110
100644
(file)
--- a/
src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperBindingStub.java
+++ b/
src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperBindingStub.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperInterface.java
b/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperInterface.java
index
3169ac1
..
d0eadc0
100644
(file)
--- a/
src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperInterface.java
+++ b/
src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperInterface.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperService.java
b/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperService.java
index
e415506
..
35f1e1b
100644
(file)
--- a/
src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperService.java
+++ b/
src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperService.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperServiceLocator.java
b/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperServiceLocator.java
index
4fac780
..
ef4fe7a
100644
(file)
--- a/
src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperServiceLocator.java
+++ b/
src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperServiceLocator.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/vamsas/IMsaWS.java
b/src/vamsas/IMsaWS.java
index
05a47dd
..
9c3791e
100755
(executable)
--- a/
src/vamsas/IMsaWS.java
+++ b/
src/vamsas/IMsaWS.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/Alignment.java
b/src/vamsas/objects/simple/Alignment.java
index
2bf1a9e
..
e555ded
100755
(executable)
--- a/
src/vamsas/objects/simple/Alignment.java
+++ b/
src/vamsas/objects/simple/Alignment.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/Alignment_Helper.java
b/src/vamsas/objects/simple/Alignment_Helper.java
index
83122d1
..
a77f777
100755
(executable)
--- a/
src/vamsas/objects/simple/Alignment_Helper.java
+++ b/
src/vamsas/objects/simple/Alignment_Helper.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/JpredResult.java
b/src/vamsas/objects/simple/JpredResult.java
index
715aea6
..
2742971
100755
(executable)
--- a/
src/vamsas/objects/simple/JpredResult.java
+++ b/
src/vamsas/objects/simple/JpredResult.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/JpredResult_Helper.java
b/src/vamsas/objects/simple/JpredResult_Helper.java
index
ca89880
..
1907a2e
100755
(executable)
--- a/
src/vamsas/objects/simple/JpredResult_Helper.java
+++ b/
src/vamsas/objects/simple/JpredResult_Helper.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/MsaResult.java
b/src/vamsas/objects/simple/MsaResult.java
index
173a2e7
..
55c9e52
100755
(executable)
--- a/
src/vamsas/objects/simple/MsaResult.java
+++ b/
src/vamsas/objects/simple/MsaResult.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/MsaResult_Helper.java
b/src/vamsas/objects/simple/MsaResult_Helper.java
index
54ac889
..
734611c
100755
(executable)
--- a/
src/vamsas/objects/simple/MsaResult_Helper.java
+++ b/
src/vamsas/objects/simple/MsaResult_Helper.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/Msfalignment.java
b/src/vamsas/objects/simple/Msfalignment.java
index
2d04275
..
8873094
100755
(executable)
--- a/
src/vamsas/objects/simple/Msfalignment.java
+++ b/
src/vamsas/objects/simple/Msfalignment.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/Msfalignment_Helper.java
b/src/vamsas/objects/simple/Msfalignment_Helper.java
index
ce30397
..
1aa1611
100755
(executable)
--- a/
src/vamsas/objects/simple/Msfalignment_Helper.java
+++ b/
src/vamsas/objects/simple/Msfalignment_Helper.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/Object.java
b/src/vamsas/objects/simple/Object.java
index
4eb8050
..
8e179b7
100755
(executable)
--- a/
src/vamsas/objects/simple/Object.java
+++ b/
src/vamsas/objects/simple/Object.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/Object_Helper.java
b/src/vamsas/objects/simple/Object_Helper.java
index
9c933b5
..
b42c790
100755
(executable)
--- a/
src/vamsas/objects/simple/Object_Helper.java
+++ b/
src/vamsas/objects/simple/Object_Helper.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/Result.java
b/src/vamsas/objects/simple/Result.java
index
ff76cd9
..
a2be372
100755
(executable)
--- a/
src/vamsas/objects/simple/Result.java
+++ b/
src/vamsas/objects/simple/Result.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/Result_Helper.java
b/src/vamsas/objects/simple/Result_Helper.java
index
d7f281e
..
4dd3b31
100755
(executable)
--- a/
src/vamsas/objects/simple/Result_Helper.java
+++ b/
src/vamsas/objects/simple/Result_Helper.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/Secstructpred.java
b/src/vamsas/objects/simple/Secstructpred.java
index
42b3a71
..
55f6637
100755
(executable)
--- a/
src/vamsas/objects/simple/Secstructpred.java
+++ b/
src/vamsas/objects/simple/Secstructpred.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/Secstructpred_Helper.java
b/src/vamsas/objects/simple/Secstructpred_Helper.java
index
84ddcd2
..
baf086e
100755
(executable)
--- a/
src/vamsas/objects/simple/Secstructpred_Helper.java
+++ b/
src/vamsas/objects/simple/Secstructpred_Helper.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/SeqSearchResult.java
b/src/vamsas/objects/simple/SeqSearchResult.java
index
71b036f
..
52ec880
100644
(file)
--- a/
src/vamsas/objects/simple/SeqSearchResult.java
+++ b/
src/vamsas/objects/simple/SeqSearchResult.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/vamsas/objects/simple/SeqSearchResult_Helper.java
b/src/vamsas/objects/simple/SeqSearchResult_Helper.java
index
a50a304
..
885e69f
100644
(file)
--- a/
src/vamsas/objects/simple/SeqSearchResult_Helper.java
+++ b/
src/vamsas/objects/simple/SeqSearchResult_Helper.java
@@
-1,5
+1,5
@@
/*
\r
/*
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/src/vamsas/objects/simple/Sequence.java
b/src/vamsas/objects/simple/Sequence.java
index
77bccf7
..
5064839
100755
(executable)
--- a/
src/vamsas/objects/simple/Sequence.java
+++ b/
src/vamsas/objects/simple/Sequence.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/SequenceSet.java
b/src/vamsas/objects/simple/SequenceSet.java
index
826cd6a
..
f76c0fa
100755
(executable)
--- a/
src/vamsas/objects/simple/SequenceSet.java
+++ b/
src/vamsas/objects/simple/SequenceSet.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/SequenceSet_Helper.java
b/src/vamsas/objects/simple/SequenceSet_Helper.java
index
6c58dc6
..
2d4778b
100755
(executable)
--- a/
src/vamsas/objects/simple/SequenceSet_Helper.java
+++ b/
src/vamsas/objects/simple/SequenceSet_Helper.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/Sequence_Helper.java
b/src/vamsas/objects/simple/Sequence_Helper.java
index
b310f55
..
818320d
100755
(executable)
--- a/
src/vamsas/objects/simple/Sequence_Helper.java
+++ b/
src/vamsas/objects/simple/Sequence_Helper.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/WsJobId.java
b/src/vamsas/objects/simple/WsJobId.java
index
2c72248
..
6db49ec
100755
(executable)
--- a/
src/vamsas/objects/simple/WsJobId.java
+++ b/
src/vamsas/objects/simple/WsJobId.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/WsJobId_Helper.java
b/src/vamsas/objects/simple/WsJobId_Helper.java
index
38c831c
..
aeec78b
100755
(executable)
--- a/
src/vamsas/objects/simple/WsJobId_Helper.java
+++ b/
src/vamsas/objects/simple/WsJobId_Helper.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/utils/InstallAnywhere/jalview_buildinstaller.xml
b/utils/InstallAnywhere/jalview_buildinstaller.xml
index
0122099
..
2e782d0
100644
(file)
--- a/
utils/InstallAnywhere/jalview_buildinstaller.xml
+++ b/
utils/InstallAnywhere/jalview_buildinstaller.xml
@@
-1,6
+1,6
@@
<?xml version="1.0"?>
<!--
<?xml version="1.0"?>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/utils/eclipse/JalviewCodeStyle.xml
b/utils/eclipse/JalviewCodeStyle.xml
index
723863f
..
c6bbf96
100644
(file)
--- a/
utils/eclipse/JalviewCodeStyle.xml
+++ b/
utils/eclipse/JalviewCodeStyle.xml
@@
-1,6
+1,6
@@
<?xml version="1.0" encoding="UTF-8" standalone="no"?>
<!--
<?xml version="1.0" encoding="UTF-8" standalone="no"?>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/utils/getJavaVersion.java
b/utils/getJavaVersion.java
index
8b2e628
..
e3f9def
100644
(file)
--- a/
utils/getJavaVersion.java
+++ b/
utils/getJavaVersion.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/utils/help2Website.java
b/utils/help2Website.java
index
e7dccd0
..
518b298
100755
(executable)
--- a/
utils/help2Website.java
+++ b/
utils/help2Website.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/utils/jalopy/docs/acknowledge.html
b/utils/jalopy/docs/acknowledge.html
index
e1e4d98
..
9219c57
100755
(executable)
--- a/
utils/jalopy/docs/acknowledge.html
+++ b/
utils/jalopy/docs/acknowledge.html
@@
-1,6
+1,6
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/utils/jalopy/docs/bi01.html
b/utils/jalopy/docs/bi01.html
index
b507c23
..
7c3af04
100755
(executable)
--- a/
utils/jalopy/docs/bi01.html
+++ b/
utils/jalopy/docs/bi01.html
@@
-1,6
+1,6
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/utils/jalopy/docs/build.html
b/utils/jalopy/docs/build.html
index
de51771
..
f9014a0
100755
(executable)
--- a/
utils/jalopy/docs/build.html
+++ b/
utils/jalopy/docs/build.html
@@
-1,6
+1,6
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/utils/jalopy/docs/comments.html
b/utils/jalopy/docs/comments.html
index
8a75953
..
79f8af1
100755
(executable)
--- a/
utils/jalopy/docs/comments.html
+++ b/
utils/jalopy/docs/comments.html
@@
-1,6
+1,6
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/utils/jalopy/docs/contact.html
b/utils/jalopy/docs/contact.html
index
9d2518d
..
2643494
100755
(executable)
--- a/
utils/jalopy/docs/contact.html
+++ b/
utils/jalopy/docs/contact.html
@@
-1,6
+1,6
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/utils/jalopy/docs/contributors.html
b/utils/jalopy/docs/contributors.html
index
9a69927
..
2515d59
100755
(executable)
--- a/
utils/jalopy/docs/contributors.html
+++ b/
utils/jalopy/docs/contributors.html
@@
-1,6
+1,6
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/utils/jalopy/docs/dedication.html
b/utils/jalopy/docs/dedication.html
index
86d2b37
..
9dce997
100755
(executable)
--- a/
utils/jalopy/docs/dedication.html
+++ b/
utils/jalopy/docs/dedication.html
@@
-1,6
+1,6
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/utils/jalopy/docs/dependencies.html
b/utils/jalopy/docs/dependencies.html
index
41bfd8a
..
bea6ef2
100755
(executable)
--- a/
utils/jalopy/docs/dependencies.html
+++ b/
utils/jalopy/docs/dependencies.html
@@
-1,6
+1,6
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/utils/jalopy/docs/docs.html
b/utils/jalopy/docs/docs.html
index
59a0c46
..
fffcff2
100755
(executable)
--- a/
utils/jalopy/docs/docs.html
+++ b/
utils/jalopy/docs/docs.html
@@
-1,6
+1,6
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/utils/jalopy/docs/download.html
b/utils/jalopy/docs/download.html
index
98ca93d
..
3130956
100755
(executable)
--- a/
utils/jalopy/docs/download.html
+++ b/
utils/jalopy/docs/download.html
@@
-1,6
+1,6
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/utils/jalopy/docs/environment.html
b/utils/jalopy/docs/environment.html
index
0448dcc
..
d0ba3a5
100755
(executable)
--- a/
utils/jalopy/docs/environment.html
+++ b/
utils/jalopy/docs/environment.html
@@
-1,6
+1,6
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/utils/jalopy/docs/faq.html
b/utils/jalopy/docs/faq.html
index
361f0a6
..
a57b16b
100755
(executable)
--- a/
utils/jalopy/docs/faq.html
+++ b/
utils/jalopy/docs/faq.html
@@
-1,6
+1,6
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/utils/jalopy/docs/features.html
b/utils/jalopy/docs/features.html
index
75188d5
..
39b4424
100755
(executable)
--- a/
utils/jalopy/docs/features.html
+++ b/
utils/jalopy/docs/features.html
@@
-1,6
+1,6
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/utils/jalopy/docs/footer.html
b/utils/jalopy/docs/footer.html
index
322a958
..
1f8bfe9
100755
(executable)
--- a/
utils/jalopy/docs/footer.html
+++ b/
utils/jalopy/docs/footer.html
@@
-1,6
+1,6
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/utils/jalopy/docs/header.html
b/utils/jalopy/docs/header.html
index
0e5e8ef
..
181a438
100755
(executable)
--- a/
utils/jalopy/docs/header.html
+++ b/
utils/jalopy/docs/header.html
@@
-1,6
+1,6
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/utils/jalopy/docs/history.html
b/utils/jalopy/docs/history.html
index
089177c
..
3722d0d
100755
(executable)
--- a/
utils/jalopy/docs/history.html
+++ b/
utils/jalopy/docs/history.html
@@
-1,6
+1,6
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/utils/jalopy/docs/imports.html
b/utils/jalopy/docs/imports.html
index
087fb92
..
27fcb8b
100755
(executable)
--- a/
utils/jalopy/docs/imports.html
+++ b/
utils/jalopy/docs/imports.html
@@
-1,6
+1,6
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/utils/jalopy/docs/indentation.html
b/utils/jalopy/docs/indentation.html
index
a281328
..
3a23570
100755
(executable)
--- a/
utils/jalopy/docs/indentation.html
+++ b/
utils/jalopy/docs/indentation.html
@@
-1,6
+1,6
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/utils/jalopy/docs/index.html
b/utils/jalopy/docs/index.html
index
2f83c93
..
d1fd810
100755
(executable)
--- a/
utils/jalopy/docs/index.html
+++ b/
utils/jalopy/docs/index.html
@@
-1,6
+1,6
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/utils/jalopy/docs/inspector-naming.html
b/utils/jalopy/docs/inspector-naming.html
index
f125ecd
..
993f298
100755
(executable)
--- a/
utils/jalopy/docs/inspector-naming.html
+++ b/
utils/jalopy/docs/inspector-naming.html
@@
-1,6
+1,6
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/utils/jalopy/docs/inspector.html
b/utils/jalopy/docs/inspector.html
index
a712b57
..
a14c622
100755
(executable)
--- a/
utils/jalopy/docs/inspector.html
+++ b/
utils/jalopy/docs/inspector.html
@@
-1,6
+1,6
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/utils/jalopy/docs/installation.html
b/utils/jalopy/docs/installation.html
index
87ed6d5
..
514999f
100755
(executable)
--- a/
utils/jalopy/docs/installation.html
+++ b/
utils/jalopy/docs/installation.html
@@
-1,6
+1,6
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/utils/jalopy/docs/introduction.html
b/utils/jalopy/docs/introduction.html
index
56e6332
..
231d8bd
100755
(executable)
--- a/
utils/jalopy/docs/introduction.html
+++ b/
utils/jalopy/docs/introduction.html
@@
-1,6
+1,6
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
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<!--
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+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/utils/jalopy/docs/plugin-jedit-license.html
b/utils/jalopy/docs/plugin-jedit-license.html
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--- a/
utils/jalopy/docs/plugin-jedit-license.html
+++ b/
utils/jalopy/docs/plugin-jedit-license.html
@@
-1,6
+1,6
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/utils/jalopy/docs/plugin-jedit.html
b/utils/jalopy/docs/plugin-jedit.html
index
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+++ b/
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@@
-1,6
+1,6
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/utils/jalopy/docs/plugin-netbeans-integration.html
b/utils/jalopy/docs/plugin-netbeans-integration.html
index
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+++ b/
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@@
-1,6
+1,6
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/utils/jalopy/docs/plugin-netbeans-license.html
b/utils/jalopy/docs/plugin-netbeans-license.html
index
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(executable)
--- a/
utils/jalopy/docs/plugin-netbeans-license.html
+++ b/
utils/jalopy/docs/plugin-netbeans-license.html
@@
-1,6
+1,6
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/utils/jalopy/docs/plugin-netbeans.html
b/utils/jalopy/docs/plugin-netbeans.html
index
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(executable)
--- a/
utils/jalopy/docs/plugin-netbeans.html
+++ b/
utils/jalopy/docs/plugin-netbeans.html
@@
-1,6
+1,6
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/utils/jalopy/docs/plugins.html
b/utils/jalopy/docs/plugins.html
index
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..
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--- a/
utils/jalopy/docs/plugins.html
+++ b/
utils/jalopy/docs/plugins.html
@@
-1,6
+1,6
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/utils/jalopy/docs/printer.html
b/utils/jalopy/docs/printer.html
index
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..
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(executable)
--- a/
utils/jalopy/docs/printer.html
+++ b/
utils/jalopy/docs/printer.html
@@
-1,6
+1,6
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/utils/jalopy/docs/project.html
b/utils/jalopy/docs/project.html
index
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..
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(executable)
--- a/
utils/jalopy/docs/project.html
+++ b/
utils/jalopy/docs/project.html
@@
-1,6
+1,6
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/utils/jalopy/docs/separation.html
b/utils/jalopy/docs/separation.html
index
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..
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(executable)
--- a/
utils/jalopy/docs/separation.html
+++ b/
utils/jalopy/docs/separation.html
@@
-1,6
+1,6
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/utils/jalopy/docs/settings.html
b/utils/jalopy/docs/settings.html
index
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..
ea0fdf4
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(executable)
--- a/
utils/jalopy/docs/settings.html
+++ b/
utils/jalopy/docs/settings.html
@@
-1,6
+1,6
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/utils/jalopy/docs/sorting.html
b/utils/jalopy/docs/sorting.html
index
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..
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(executable)
--- a/
utils/jalopy/docs/sorting.html
+++ b/
utils/jalopy/docs/sorting.html
@@
-1,6
+1,6
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/utils/jalopy/docs/usage.html
b/utils/jalopy/docs/usage.html
index
75fe0f4
..
3b08f0e
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(executable)
--- a/
utils/jalopy/docs/usage.html
+++ b/
utils/jalopy/docs/usage.html
@@
-1,6
+1,6
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/utils/jalopy/docs/whitespace.html
b/utils/jalopy/docs/whitespace.html
index
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..
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(executable)
--- a/
utils/jalopy/docs/whitespace.html
+++ b/
utils/jalopy/docs/whitespace.html
@@
-1,6
+1,6
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/utils/jalopy/docs/wrapping.html
b/utils/jalopy/docs/wrapping.html
index
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..
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(executable)
--- a/
utils/jalopy/docs/wrapping.html
+++ b/
utils/jalopy/docs/wrapping.html
@@
-1,6
+1,6
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
diff --git
a/utils/jalopy/readme.html
b/utils/jalopy/readme.html
index
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..
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(executable)
--- a/
utils/jalopy/readme.html
+++ b/
utils/jalopy/readme.html
@@
-1,6
+1,6
@@
<html><head>
<!--
<html><head>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.