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JAL-3010 updated SO data file to latest 3.1
authorgmungoc <g.m.carstairs@dundee.ac.uk>
Thu, 25 Apr 2019 09:11:47 +0000 (10:11 +0100)
committergmungoc <g.m.carstairs@dundee.ac.uk>
Thu, 25 Apr 2019 09:11:47 +0000 (10:11 +0100)
https://github.com/The-Sequence-Ontology/SO-Ontologies/blob/v3.1/so-simple.obo

resources/so-simple.obo.zip [new file with mode: 0644] patch | blob
resources/so-xp-simple.obo.zip [deleted file] patch | blob | history
src/jalview/ext/so/SequenceOntology.java patch | blob | history

diff --git a/resources/so-simple.obo.zip b/resources/so-simple.obo.zip
new file mode 100644 (file)
index 0000000..5f2c6d5
Binary files /dev/null and b/resources/so-simple.obo.zip differ
diff --git a/resources/so-xp-simple.obo.zip b/resources/so-xp-simple.obo.zip
deleted file mode 100644 (file)
index d150da0..0000000
Binary files a/resources/so-xp-simple.obo.zip and /dev/null differ
diff --git a/src/jalview/ext/so/SequenceOntology.java b/src/jalview/ext/so/SequenceOntology.java
index 16b1562..34e794e 100644 (file)
--- a/src/jalview/ext/so/SequenceOntology.java
+++ b/src/jalview/ext/so/SequenceOntology.java
@@ -93,7 +93,7 @@ public class SequenceOntology extends OntologyBase
     aliases = new HashMap<>();
     termIsA = new HashMap<>();
 
-    loadOntologyZipFile("so-xp-simple.obo");
+    loadOntologyZipFile("so-simple.obo");
   }
 
   /**