JAL-3253 JAL-3442 just comment tidying

diff --git a/src/jalview/api/AlignViewportI.java b/src/jalview/api/AlignViewportI.java
index cec61f4..4016c75 100644 (file)
--- a/src/jalview/api/AlignViewportI.java
+++ b/src/jalview/api/AlignViewportI.java
@@ -199,13 +199,7 @@ public interface AlignViewportI extends ViewStyleI
    * Sets the colour scheme for the background alignment (as distinct from
    * sub-groups, which may have their own colour schemes). A null value is used
    * for no residue colour (white).
-   * 
-   * BH Note: It is critical that any call to
-   * AlignViewportI.setGlobalColourScheme is followed closely, if not
-   * immediately, by a call to AlignPanel.repaint(true, true) so that the
-   * overview is updated. When that happens, the sequence overview color caches
-   * are cleared.
-   * 
+   *
    * @param cs
    */
   void setGlobalColourScheme(ColourSchemeI cs);

diff --git a/src/jalview/api/FeatureRenderer.java b/src/jalview/api/FeatureRenderer.java
index 6caa1c7..404c497 100644 (file)
--- a/src/jalview/api/FeatureRenderer.java
+++ b/src/jalview/api/FeatureRenderer.java
@@ -125,7 +125,7 @@ public interface FeatureRenderer
   List<String> getFeatureGroups();
 
   /**
-   * get groups that are visible/invisible -- JalviewLite only?
+   * get groups that are visible/invisible
    * 
    * @param visible
    * @return
@@ -133,7 +133,7 @@ public interface FeatureRenderer
   List<String> getGroups(boolean visible);
 
   /**
-   * Set visibility for a list of groups -- JalviewLite only?
+   * Set visibility for a list of groups
    * 
    * @param toset
    * @param visible

diff --git a/src/jalview/renderer/seqfeatures/FeatureRenderer.java b/src/jalview/renderer/seqfeatures/FeatureRenderer.java
index cccd916..9751e0b 100644 (file)
--- a/src/jalview/renderer/seqfeatures/FeatureRenderer.java
+++ b/src/jalview/renderer/seqfeatures/FeatureRenderer.java
@@ -300,9 +300,6 @@ public class FeatureRenderer extends FeatureRendererModel
       Graphics2D g2 = (Graphics2D) g;
       g2.setComposite(AlphaComposite.getInstance(AlphaComposite.SRC_OVER,
               transparency));
-      // ((Graphics2D) g).setComposite(
-      // AlphaComposite.getInstance(AlphaComposite.SRC_OVER,
-      // transparency));
     }
 
     Color drawnColour = null;