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sequence numbering from 1
author
jprocter
<jprocter@compbio.dundee.ac.uk>
Sat, 17 Nov 2012 21:02:51 +0000
(21:02 +0000)
committer
jprocter
<jprocter@compbio.dundee.ac.uk>
Sat, 17 Nov 2012 21:02:51 +0000
(21:02 +0000)
src/jalview/io/RnamlFile.java
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diff --git
a/src/jalview/io/RnamlFile.java
b/src/jalview/io/RnamlFile.java
index
da64607
..
bc6b385
100644
(file)
--- a/
src/jalview/io/RnamlFile.java
+++ b/
src/jalview/io/RnamlFile.java
@@
-126,8
+126,8
@@
public class RnamlFile extends AlignFile
//System.out.println(result.get(0).getAnnotations());
String seq = current.getSeq();
- int begin=0;
- int end = seq.length()-1;
+ int begin=1;
+ int end = seq.length();
id = current.getName();
seqs[i] = new Sequence(id, seq, begin, end);