sequence numbering from 1
authorjprocter <jprocter@compbio.dundee.ac.uk>
Sat, 17 Nov 2012 21:02:51 +0000 (21:02 +0000)
committerjprocter <jprocter@compbio.dundee.ac.uk>
Sat, 17 Nov 2012 21:02:51 +0000 (21:02 +0000)
src/jalview/io/RnamlFile.java

index da64607..bc6b385 100644 (file)
@@ -126,8 +126,8 @@ public class RnamlFile extends AlignFile
                  //System.out.println(result.get(0).getAnnotations());
                  String seq = current.getSeq();
        
-                 int begin=0;
-                 int end = seq.length()-1;
+                 int begin=1;
+                 int end = seq.length();
                  
                  id = current.getName();
                  seqs[i] = new Sequence(id, seq, begin, end);