sequence numbering from 1

diff --git a/src/jalview/io/RnamlFile.java b/src/jalview/io/RnamlFile.java
index da64607..bc6b385 100644 (file)
--- a/src/jalview/io/RnamlFile.java
+++ b/src/jalview/io/RnamlFile.java
@@ -126,8 +126,8 @@ public class RnamlFile extends AlignFile
                  //System.out.println(result.get(0).getAnnotations());
                  String seq = current.getSeq();
        
-                 int begin=0;
-                 int end = seq.length()-1;
+                 int begin=1;
+                 int end = seq.length();
                  
                  id = current.getName();
                  seqs[i] = new Sequence(id, seq, begin, end);