* @param sf
* @param altAlelleIndex
*/
- protected void addAlleleProperties(VariantContext variant,
- SequenceI seq,
+ protected void addAlleleProperties(VariantContext variant, SequenceI seq,
SequenceFeature sf, final int altAlelleIndex)
{
Map<String, Object> atts = variant.getAttributes();
* (1=first alternative allele...)
*/
protected void addConsequences(Object value, SequenceI seq,
- SequenceFeature sf,
- int altAlelleIndex)
+ SequenceFeature sf, int altAlelleIndex)
{
if (!(value instanceof ArrayList<?>))
{