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JAL-282 TODO - Sequence name from PDB had redundant info
author
Jim Procter
<jprocter@issues.jalview.org>
Wed, 7 Sep 2016 11:26:32 +0000
(12:26 +0100)
committer
Jim Procter
<jprocter@issues.jalview.org>
Wed, 7 Sep 2016 11:26:51 +0000
(12:26 +0100)
src/jalview/ws/dbsources/Pdb.java
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diff --git
a/src/jalview/ws/dbsources/Pdb.java
b/src/jalview/ws/dbsources/Pdb.java
index
61c5c04
..
04c23a2
100644
(file)
--- a/
src/jalview/ws/dbsources/Pdb.java
+++ b/
src/jalview/ws/dbsources/Pdb.java
@@
-173,6
+173,8
@@
public class Pdb extends EbiFileRetrievedProxy
|| chid.trim().equals(chain.trim()) || (chain
.trim().length() == 0 && chid.equals("_")))))
{
+ // FIXME seems to result in 'PDB|1QIP|1qip|A' - 1QIP is redundant.
+ // TODO: suggest simplify naming to 1qip|A as default name defined
pdbcs.setName(jalview.datamodel.DBRefSource.PDB + "|" + id
+ "|" + pdbcs.getName());
// Might need to add more metadata to the PDBEntry object