JAL-282 TODO - Sequence name from PDB had redundant info
authorJim Procter <jprocter@issues.jalview.org>
Wed, 7 Sep 2016 11:26:32 +0000 (12:26 +0100)
committerJim Procter <jprocter@issues.jalview.org>
Wed, 7 Sep 2016 11:26:51 +0000 (12:26 +0100)
src/jalview/ws/dbsources/Pdb.java

index 61c5c04..04c23a2 100644 (file)
@@ -173,6 +173,8 @@ public class Pdb extends EbiFileRetrievedProxy
                           || chid.trim().equals(chain.trim()) || (chain
                           .trim().length() == 0 && chid.equals("_")))))
           {
+            // FIXME seems to result in 'PDB|1QIP|1qip|A' - 1QIP is redundant.
+            // TODO: suggest simplify naming to 1qip|A as default name defined
             pdbcs.setName(jalview.datamodel.DBRefSource.PDB + "|" + id
                     + "|" + pdbcs.getName());
             // Might need to add more metadata to the PDBEntry object