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JAL-4199 Fix slivka client to parse feature fileters
authorMateusz Warowny <mmzwarowny@dundee.ac.uk>
Wed, 12 Jul 2023 12:48:18 +0000 (14:48 +0200)
committerMateusz Warowny <mmzwarowny@dundee.ac.uk>
Wed, 12 Jul 2023 14:25:05 +0000 (16:25 +0200)
src/jalview/ws2/client/slivka/SlivkaWSClient.java patch | blob | history

diff --git a/src/jalview/ws2/client/slivka/SlivkaWSClient.java b/src/jalview/ws2/client/slivka/SlivkaWSClient.java
index 7dcdae1..477bc34 100644 (file)
--- a/src/jalview/ws2/client/slivka/SlivkaWSClient.java
+++ b/src/jalview/ws2/client/slivka/SlivkaWSClient.java
@@ -272,7 +272,8 @@ class SlivkaAnnotationWSClient extends SlivkaWSClient
       {
         FeaturesFile ff = new FeaturesFile(f.getContentUrl().toString(),
             DataSourceType.URL);
-        featPresent = ff.parse(aln, colours, true);
+        // TODO: determine if relaxed id matching is T/F
+        featPresent = ff.parse(aln, colours, filters, false, true);
         if (featPresent)
           Console.debug(format("loaded features for %s", service.getId()));
       }