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JAL-2755 add missing Javadoc
author
gmungoc
<g.m.carstairs@dundee.ac.uk>
Thu, 19 Oct 2017 13:57:12 +0000
(14:57 +0100)
committer
gmungoc
<g.m.carstairs@dundee.ac.uk>
Thu, 19 Oct 2017 13:57:12 +0000
(14:57 +0100)
src/jalview/datamodel/SequenceI.java
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diff --git
a/src/jalview/datamodel/SequenceI.java
b/src/jalview/datamodel/SequenceI.java
index
03fc545
..
28be85f
100755
(executable)
--- a/
src/jalview/datamodel/SequenceI.java
+++ b/
src/jalview/datamodel/SequenceI.java
@@
-536,8
+536,21
@@
public interface SequenceI extends ASequenceI
*/
public int replace(char c1, char c2);
+ /**
+ * Answers the GeneLociI, or null if not known
+ *
+ * @return
+ */
GeneLociI getGeneLoci();
+ /**
+ * Sets the mapping to gene loci for the sequence
+ *
+ * @param speciesId
+ * @param assemblyId
+ * @param chromosomeId
+ * @param map
+ */
void setGeneLoci(String speciesId, String assemblyId,
String chromosomeId, MapList map);
}