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JAL-4417 Use a specified props file for consistent output
[jalview.git]
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help
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help
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html
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features
/
2023-11-15
James Procter
JAL-4090 JAL-3858 fix up PAE docs - drop the EBI image...
tree
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commitdiff
2023-11-02
James Procter
JAL-4090 JAL-4147 documentation for revised sequence...
tree
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commitdiff
2023-10-23
James Procter
Merge branch 'feature/JAL-4307_hetatm_showhide' into...
tree
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commitdiff
2023-10-22
James Procter
Merge branch 'develop' into improvement/JAL-3783_upgrad...
tree
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commitdiff
2023-10-20
Ben Soares
JAL-4298 Update help docs to reflect Groovy changes
improvement/JAL-3783_upgrade_to_groovy-4
tree
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commitdiff
2023-10-19
Ben Soares
Merge branch 'patch/JAL-4298_synchronize_consoledoc...
tree
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commitdiff
2023-10-19
James Procter
JAL-4307 View->Ligands submenu, implementation for...
tree
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commitdiff
2023-10-17
James Procter
JAL-4090 JAL-4089 document use of selected columns...
doc/JAL-4090_Release_2_11_3_0
tree
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commitdiff
2023-10-11
Ben Soares
JAL-4298 Added diagnostics and minor dimension changes...
tree
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commitdiff
2023-10-05
James Procter
JAL-4090 JAL-3858 paedocs
tree
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commitdiff
2023-10-03
James Procter
Merge branch 'develop' into doc/JAL-4090_Release_2_11_3_0
tree
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commitdiff
2023-10-03
James Procter
JAL-4061 JAL-4062 update find box image and docs in...
tree
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commitdiff
2023-10-03
James Procter
Merge branch 'develop' into doc/JAL-4090_Release_2_11_3_0
tree
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commitdiff
2023-10-03
James Procter
JAL-4090 tweak pae doc
tree
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commitdiff
2023-10-02
jprocter
JAL-4090 more JAL-3858 docs
tree
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commitdiff
2023-10-01
James Procter
JAL-4090 JAL-3855 updated figure and doc.. a little
bug/JAL-244_interactingpngexportnotwysiwig
tree
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commitdiff
2023-09-29
James Procter
JAL-4090 JAL-629 FER1+SPIOL -> FER1_SPIOL in command...
tree
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commitdiff
2023-09-29
James Procter
JAL-4090 figures in paematrix doc
tree
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commitdiff
2023-09-28
James Procter
JAL-4090 JAL-3855 figure showing PAEs for epas1 homolog...
tree
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commitdiff
2023-09-28
James Procter
JAL-1556 JAL-4090 colour by annotation options on annot...
tree
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commitdiff
2023-09-26
James Procter
JAL-3858 JAL-4090 pae matrix docs. WIP
tree
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commitdiff
2023-09-25
James Procter
JAL-3858 JAL-4090 PAE documentation..
tree
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commitdiff
2023-09-25
James Procter
JAL-4090 fix link...
tree
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commitdiff
2023-09-22
James Procter
JAL-4090 smaller associate PDB file panel image in...
tree
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commitdiff
2023-09-21
James Procter
JAL-3858 JAL-3855 documentation for import and display...
tree
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commitdiff
2023-09-21
Ben Soares
JAL-4265 Use ColourUtils.parseColourString() for consis...
merge/JAL-4262+JAL-4265+JAL-4269+JAL-4274+JAL-4277+JAL-4285
tree
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commitdiff
2023-09-20
Ben Soares
JAL-629 Explanation of \{m\} in case anyone actually...
tree
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commitdiff
2023-09-20
Ben Soares
JAL-629 Add link and example for BioJS image output
tree
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commitdiff
2023-09-20
Ben Soares
JAL-629 Make arguments appear correctly using all non...
tree
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commitdiff
2023-09-20
Ben Soares
JAL-629 Added/corrected/tidied documentation
tree
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commitdiff
2023-09-19
Ben Soares
JAL-629 JAL-4265 JAL-4269 Updated help Documentation
tree
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commitdiff
2023-09-19
Ben Soares
JAL-629 JAL-4265 JAL-4269 Updated help Documentation
tree
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commitdiff
2023-08-17
Ben Soares
Merge branch 'feature/JAL-629_--output_-_means_output_t...
tree
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commitdiff
2023-08-17
Ben Soares
JAL-3830 JAL-4160 Remove --noheadless as --gui does...
tree
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commitdiff
2023-08-10
Ben Soares
JAL-629 STDOUT documentation. Opt.STDOUT narrower...
tree
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commitdiff
2023-06-07
James Procter
Merge branch 'patch/JAL-4195_cli_eps_export_npe' into...
tree
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commitdiff
2023-06-06
James Procter
JAL-4160 --colour can now take user defined scheme...
tree
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commitdiff
2023-06-01
Ben Soares
JAL-4193 JAL-4194 sessionProperties layer in Cache...
tree
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commitdiff
2023-06-01
Ben Soares
JAL-629 better reference text for --nousagestats
tree
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commitdiff
2023-05-30
Ben Soares
JAL-629 JAL-4121 Added documentation to Help docs and...
tree
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commitdiff
2023-05-23
Ben Soares
JAL-629 Updated help docs and fixed structure image...
tree
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commitdiff
2023-05-23
Ben Soares
JAL-629 Added --structureimage code and formatting...
tree
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commitdiff
2023-05-18
Ben Soares
JAL-629 fixes to help docs
tree
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commitdiff
2023-05-17
Ben Soares
JAL-629 Changed some old -arg to --arg in help docs...
tree
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commitdiff
2023-05-16
Ben Soares
JAL-629 Finished documentation for new command lines.
tree
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commitdiff
2023-05-15
Ben Soares
JAL-629 More help text
tree
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commitdiff
2023-05-13
Ben Soares
JAL-629 launcher shell script uses jalview.bin.Launcher...
tree
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commitdiff
2023-05-12
Ben Soares
JAL-629 More docs
tree
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commitdiff
2023-05-11
Ben Soares
JAL-629 Add some shortnames to args. Add Opt.OUTPUT...
tree
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commitdiff
2023-05-11
Ben Soares
JAL-629 Move clarguments documentation to default....
tree
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commitdiff
2023-05-10
Ben Soares
JAL-629 More docs. Usage statement. Adjust some logging...
tree
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commitdiff
2023-05-09
Ben Soares
JAL-629 Add --seqid for non-subval use, make arg value...
tree
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commitdiff
2023-05-09
Ben Soares
JAL-629 update a subval for structureviewer in the...
tree
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commitdiff
2023-05-09
Ben Soares
JAL-629 more docs
tree
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commitdiff
2023-05-03
Ben Soares
JAL-629 a bit more documentation
tree
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commitdiff
2023-04-28
Ben Soares
JAL-629 Change colour scheme shortnames to something...
tree
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commitdiff
2023-04-27
Ben Soares
JAL-629 start of help text
tree
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commitdiff
2023-01-24
James Procter
Merge branch 'develop' (JAL-4102 2.11.2.6 patch release...
features/r2_11_2_alphafold/JAL-2349_JAL-3855
tree
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commitdiff
2023-01-23
James Procter
JAL-4104 JAL-4102 update help docs with script to add...
Release_2_11_2_6
tree
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commitdiff
2022-10-29
Jim Procter
Merge branch 'features/JAL-4061_and_JAL-4062_findselect...
tree
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commitdiff
2022-10-07
Jim Procter
JAL-4065 update citations for Pfam and Rfam and added...
tree
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commitdiff
2022-09-15
Jim Procter
JAL-4061 JAL-4062 documentation and button labels....
tree
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commitdiff
2022-08-08
Jim Procter
Merge branch 'patch/JAL-4036_uniprot_fts_legacy_endpoin...
tree
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commitdiff
2022-08-08
Jim Procter
JAL-4043 what’s new, updated help images and release...
tree
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commitdiff
2022-07-26
Ben Soares
JAL-4036 Added text to help about different number...
tree
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commitdiff
2022-07-25
Ben Soares
JAL-4036 updated help about new UniProt API
tree
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commitdiff
2022-07-01
Jim Procter
JAL-4036 JAL-4012 note about Uniprot FTS workaround...
tree
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commitdiff
2022-06-09
Jim Procter
JAL-4012 - JAL-4020 release notes and a bit of ‘trouble...
tree
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commitdiff
2022-04-18
Jim Procter
JAL-3992 fix path
tree
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commitdiff
2022-04-13
Jim Procter
JAL-3992 shift+arrow to jump to next gap/residue in...
tree
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commitdiff
2022-03-09
Jim Procter
JAL-3746 more docs tweaking and release notes
tree
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commitdiff
2022-03-08
Ben Soares
JAL-3103 updated help doc to remove default browser...
tree
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commitdiff
2022-03-04
Jim Procter
JAL-3746 structure mapping preference docs for JAL...
tree
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commitdiff
2022-03-04
Jim Procter
JAL-3608 JAL-3830 simplified command line docs a bit
tree
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commitdiff
2022-03-04
Ben Soares
JAL-3830 Added new command line usage to docs
tree
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commitdiff
2022-03-04
Ben Soares
JAL-3608 added to LaF documentation
tree
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commitdiff
2022-03-02
Jim Procter
JAL-3208 release notes and docs for setprop
tree
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commitdiff
2022-03-02
Jim Procter
JAL-3746 release notes and cli arg docs for JAL-3530
tree
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commitdiff
2022-03-02
Jim Procter
JAL-3746 release notes JAL-3391 JAL-3829 improved 3dbea...
tree
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commitdiff
2022-02-28
Jim Procter
JAL-3503 2.11.2.0 release notes and docs
tree
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commitdiff
2022-02-28
Jim Procter
JAL-3746 JAL-3551 update pymol docs and what’s new...
tree
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commitdiff
2022-02-28
Jim Procter
JAL-3746 document -no-annotation cli arg
tree
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commitdiff
2022-02-17
Jim Procter
JAL-3746 more release notes and docs: JAL-3863 JAL...
tree
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commitdiff
2022-02-15
Jim Procter
JAL-3551 pymol documentation
tree
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commitdiff
2021-12-08
Jim Procter
JAL-3551 pymol docs - work in progress
tree
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commitdiff
2021-11-05
Ben Soares
JAL-3746 Updated help docs for 3D-Beacons. Added and...
tree
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commitdiff
2021-09-21
Jim Procter
JAL-3746 release notes and what’s new for 2.11.2 -...
doc/JAL-3746_Release_2_11_2
tree
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commitdiff
2021-09-21
Jim Procter
Merge branch 'doc/JAL-3746_Release_2_11_2' into develop
tree
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commitdiff
2021-09-16
Ben Soares
JAL-3779 Added to documentation
tree
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commitdiff
2021-09-15
Jim Procter
JAL-3741 http to https (and jar to jvp for exampleFile...
tree
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commitdiff
2021-09-15
Jim Procter
JAL-3477 added help documentation for executable jar...
tree
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commitdiff
2020-11-13
Ben Soares
JAL-3633 Help documentation updated
tree
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commitdiff
2020-09-17
Jim Procter
JAL-3741 http to https (and jar to jvp for exampleFile...
tree
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commitdiff
2020-09-03
Jim Procter
JAL-3675 update sequence fetcher service documentation...
tree
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commitdiff
2020-08-17
Jim Procter
JAL-3490 JAL-3675 release notes, update Find dialog...
tree
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commitdiff
2020-08-04
Ben Soares
JAL-3477 Added -help text for jvmmempc and jvmmemmax...
tree
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commitdiff
2020-08-04
Ben Soares
JAL-3477 added help documentation for executable jar...
tree
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commitdiff
2020-08-04
Ben Soares
JAL-3477 Added -help text for jvmmempc and jvmmemmax...
tree
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commitdiff
2020-08-03
Ben Soares
JAL-3477 added help documentation for executable jar...
tree
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commitdiff
2020-07-29
Jim Procter
JAL-3675 mention -open argument in the command line...
tree
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commitdiff
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