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JAL-4059 updated swingjs, Jmol-SwingJS.zip. Insignificantly altered build.gradle.
[jalview.git] / help / help /
2023-11-15 James ProcterJAL-4090 JAL-3858 fix up PAE docs - drop the EBI image... tree | commitdiff
2023-11-02 James ProcterJAL-4169 fix up urls to faq and documentation tree | commitdiff
2023-11-02 James ProcterJAL-4090 JAL-4147 documentation for revised sequence... tree | commitdiff
2023-10-23 James ProcterMerge branch 'feature/JAL-4307_hetatm_showhide' into... tree | commitdiff
2023-10-22 James ProcterMerge branch 'develop' into improvement/JAL-3783_upgrad... tree | commitdiff
2023-10-20 Ben SoaresJAL-4298 Update help docs to reflect Groovy changes improvement/JAL-3783_upgrade_to_groovy-4 tree | commitdiff
2023-10-19 Ben SoaresMerge branch 'patch/JAL-4298_synchronize_consoledoc... tree | commitdiff
2023-10-19 James ProcterJAL-4307 View->Ligands submenu, implementation for... tree | commitdiff
2023-10-17 James ProcterJAL-4090 JAL-4089 document use of selected columns... doc/JAL-4090_Release_2_11_3_0 tree | commitdiff
2023-10-11 Ben SoaresJAL-4298 Added diagnostics and minor dimension changes... tree | commitdiff
2023-10-05 James ProcterJAL-4090 JAL-3858 paedocs tree | commitdiff
2023-10-03 James ProcterMerge branch 'develop' into doc/JAL-4090_Release_2_11_3_0 tree | commitdiff
2023-10-03 James ProcterJAL-4061 JAL-4062 update find box image and docs in... tree | commitdiff
2023-10-03 James ProcterMerge branch 'develop' into doc/JAL-4090_Release_2_11_3_0 tree | commitdiff
2023-10-03 James ProcterJAL-4090 tweak pae doc tree | commitdiff
2023-10-02 jprocterJAL-4090 more JAL-3858 docs tree | commitdiff
2023-10-01 James ProcterJAL-4090 JAL-3855 updated figure and doc.. a little bug/JAL-244_interactingpngexportnotwysiwig tree | commitdiff
2023-09-29 James ProcterJAL-4090 JAL-629 FER1+SPIOL -> FER1_SPIOL in command... tree | commitdiff
2023-09-29 James ProcterJAL-4090 figures in paematrix doc tree | commitdiff
2023-09-28 James ProcterJAL-4090 JAL-3855 figure showing PAEs for epas1 homolog... tree | commitdiff
2023-09-28 James ProcterJAL-1556 JAL-4090 colour by annotation options on annot... tree | commitdiff
2023-09-28 Ben SoaresJAL-3858 corrected URL fragment in docs tree | commitdiff
2023-09-26 James ProcterJAL-3858 JAL-4090 pae matrix docs. WIP tree | commitdiff
2023-09-25 James ProcterJAL-3858 JAL-4090 PAE documentation.. tree | commitdiff
2023-09-25 James ProcterJAL-4090 fix link... tree | commitdiff
2023-09-22 James ProcterJAL-4090 smaller associate PDB file panel image in... tree | commitdiff
2023-09-21 James ProcterJAL-4090 what’s new and additional help docs for JAL... tree | commitdiff
2023-09-21 James ProcterJAL-3858 JAL-3855 documentation for import and display... tree | commitdiff
2023-09-21 Ben SoaresJAL-4265 Use ColourUtils.parseColourString() for consis... merge/JAL-4262+JAL-4265+JAL-4269+JAL-4274+JAL-4277+JAL-4285 tree | commitdiff
2023-09-20 Ben SoaresJAL-629 Explanation of \{m\} in case anyone actually... tree | commitdiff
2023-09-20 Ben SoaresJAL-629 Add link and example for BioJS image output tree | commitdiff
2023-09-20 Ben SoaresJAL-629 Make arguments appear correctly using all non... tree | commitdiff
2023-09-20 Ben SoaresJAL-629 Added/corrected/tidied documentation tree | commitdiff
2023-09-19 Ben SoaresJAL-629 JAL-4265 JAL-4269 Updated help Documentation tree | commitdiff
2023-09-19 Ben SoaresJAL-629 JAL-4265 JAL-4269 Updated help Documentation tree | commitdiff
2023-09-07 James ProcterJAL-4090 JAL-4160 JAL-4274 image export dimensions... tree | commitdiff
2023-08-17 Ben SoaresMerge branch 'feature/JAL-629_--output_-_means_output_t... tree | commitdiff
2023-08-17 Ben SoaresJAL-3830 JAL-4160 Remove --noheadless as --gui does... tree | commitdiff
2023-08-10 Ben SoaresJAL-629 STDOUT documentation. Opt.STDOUT narrower... tree | commitdiff
2023-07-04 James ProcterJAL-4117 Fri June 30th release of 2.11.2.7 with Jalview... tree | commitdiff
2023-06-29 James ProcterJAL-4117 JAL-4001 plausible analytics release notes... tree | commitdiff
2023-06-07 James ProcterMerge branch 'patch/JAL-4195_cli_eps_export_npe' into... tree | commitdiff
2023-06-06 James ProcterJAL-4160 --colour can now take user defined scheme... tree | commitdiff
2023-06-01 Ben SoaresJAL-4193 JAL-4194 sessionProperties layer in Cache... tree | commitdiff
2023-06-01 Ben SoaresJAL-629 better reference text for --nousagestats tree | commitdiff
2023-05-30 Ben SoaresJAL-629 JAL-4121 Added documentation to Help docs and... tree | commitdiff
2023-05-23 Ben SoaresJAL-629 Updated help docs and fixed structure image... tree | commitdiff
2023-05-23 Ben SoaresJAL-629 Added --structureimage code and formatting... tree | commitdiff
2023-05-18 Ben SoaresJAL-629 fixes to help docs tree | commitdiff
2023-05-17 Ben SoaresJAL-629 Changed some old -arg to --arg in help docs... tree | commitdiff
2023-05-17 Ben SoaresJAL-629 tidying the help docs tree | commitdiff
2023-05-16 Ben SoaresJAL-629 Finished documentation for new command lines. tree | commitdiff
2023-05-15 Ben SoaresJAL-629 More help text tree | commitdiff
2023-05-13 Ben SoaresJAL-629 launcher shell script uses jalview.bin.Launcher... tree | commitdiff
2023-05-12 Ben SoaresJAL-629 More docs tree | commitdiff
2023-05-11 Ben SoaresJAL-629 Add some shortnames to args. Add Opt.OUTPUT... tree | commitdiff
2023-05-11 Ben SoaresJAL-629 Move clarguments documentation to default.... tree | commitdiff
2023-05-10 Ben SoaresJAL-629 More docs. Usage statement. Adjust some logging... tree | commitdiff
2023-05-09 Ben SoaresJAL-629 Add --seqid for non-subval use, make arg value... tree | commitdiff
2023-05-09 Ben SoaresJAL-629 update a subval for structureviewer in the... tree | commitdiff
2023-05-09 Ben SoaresJAL-629 more docs tree | commitdiff
2023-05-03 Ben SoaresJAL-629 a bit more documentation tree | commitdiff
2023-04-28 Ben SoaresJAL-629 Change colour scheme shortnames to something... tree | commitdiff
2023-04-27 Ben SoaresJAL-629 start of help text tree | commitdiff
2023-02-03 James ProcterMerge branch 'develop' into features/r2_11_2_alphafold... tree | commitdiff
2023-01-25 James ProcterMerge branch 'new_feature/JAL-4019_ambiguous_base_colou... tree | commitdiff
2023-01-24 James ProcterMerge branch 'develop' (JAL-4102 2.11.2.6 patch release... features/r2_11_2_alphafold/JAL-2349_JAL-3855 tree | commitdiff
2023-01-23 James ProcterJAL-4104 JAL-4102 update help docs with script to add... Release_2_11_2_6 tree | commitdiff
2022-11-17 Ben SoaresJAL-4019 Clarification of position on 'X' in help text tree | commitdiff
2022-11-13 Ben SoaresJAL-4019 small colour fix for X in the documentation tree | commitdiff
2022-11-13 Ben SoaresJAL-4019 attribution to Suzanne tree | commitdiff
2022-11-13 Ben SoaresJAL-4019 Help pages for Nucleotide Ambiguity colour... tree | commitdiff
2022-10-29 Jim ProcterMerge branch 'features/JAL-4061_and_JAL-4062_findselect... tree | commitdiff
2022-10-11 Ben SoaresJAL-4014 Changed gecos display names to match labels... tree | commitdiff
2022-10-07 Jim ProcterJAL-4065 update citations for Pfam and Rfam and added... tree | commitdiff
2022-09-16 Jim ProcterJAL-4062 copy highlighted region docs, new Alignment... tree | commitdiff
2022-09-15 Jim ProcterJAL-4061 JAL-4062 documentation and button labels.... tree | commitdiff
2022-08-08 Jim ProcterMerge branch 'improvement/JAL-4014_gecos_colour_schemes... tree | commitdiff
2022-08-08 Jim ProcterMerge branch 'patch/JAL-4036_uniprot_fts_legacy_endpoin... tree | commitdiff
2022-08-08 Jim ProcterJAL-4043 what’s new, updated help images and release... tree | commitdiff
2022-07-26 Ben SoaresJAL-4036 Added text to help about different number... tree | commitdiff
2022-07-25 Ben SoaresJAL-4036 updated help about new UniProt API tree | commitdiff
2022-07-01 Jim ProcterJAL-4036 JAL-4012 note about Uniprot FTS workaround... tree | commitdiff
2022-06-09 Jim ProcterJAL-4012 - JAL-4020 release notes and a bit of ‘trouble... tree | commitdiff
2022-06-09 Jim ProcterJAL-4004 add the autogenerated whatsNew.html and releas... tree | commitdiff
2022-05-12 Ben SoaresMerge branch 'develop' into issues/JAL-3553+JAL-3978... issues/JAL-3553+JAL-3978+JAL-3989+JAL-4004_merged_with_develop tree | commitdiff
2022-05-12 Ben SoaresJAL-4014 4 gecos colour schemes added to help documentation improvement/JAL-4014_gecos_colour_schemes tree | commitdiff
2022-05-11 Jim ProcterJAL-4012 JAL-4008 release notes for Jalview 2.11.2.3 tree | commitdiff
2022-05-10 Ben SoaresJAL-4004 cosmetic improvements for Java documentation... tree | commitdiff
2022-05-09 Ben SoaresJAL-4004 working templates and generated whatsNew.html... tree | commitdiff
2022-05-09 Ben SoaresJAL-4004 gradle releasesTemplates builds releases.html tree | commitdiff
2022-05-03 Ben SoaresJAL-1544 minor errors in releases.html and one missing... tree | commitdiff
2022-04-27 Ben SoaresJAL-1544 version number typo, probably copy and paste tree | commitdiff
2022-04-19 Jim ProcterJAL-3992 bump version and report updates in 2.11.2... tree | commitdiff
2022-04-18 Jim ProcterJAL-3992 fix path tree | commitdiff
2022-04-13 Jim ProcterJAL-3992 shift+arrow to jump to next gap/residue in... tree | commitdiff
2022-04-05 Jim ProcterJAL-3990 release notes and what’s new Release_2_11_2_1 tree | commitdiff
2022-04-05 Jim ProcterJAL-3990 release notes for 2.11.2.1 patch release tree | commitdiff
2022-03-31 Jim ProcterJAL-3983 release note for JAL-3985 tree | commitdiff
2022-03-30 Jim ProcterJAL-3983 known issue note for JAL-3984 tree | commitdiff
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