git://source.jalview.org
/
jalview.git
/ history
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
first
⋅
prev
⋅
next
Merge branch 'releases/Release_2_11_4_Branch'
[jalview.git]
/ help
2023-10-03
James Procter
Merge branch 'develop' into doc/JAL-4090_Release_2_11_3_0
commit
|
commitdiff
2023-10-03
James Procter
JAL-4090 tweak pae doc
commit
|
commitdiff
2023-10-02
jprocter
JAL-4090 more JAL-3858 docs
commit
|
commitdiff
2023-10-01
James Procter
JAL-4090 JAL-3855 updated figure and doc.. a little
bug/JAL-244_interactingpngexportnotwysiwig
commit
|
commitdiff
2023-10-01
James Procter
JAL-4090 JAL-4291 disable failing test and note as...
commit
|
commitdiff
2023-09-29
James Procter
JAL-4090 JAL-629 FER1+SPIOL -> FER1_SPIOL in command...
commit
|
commitdiff
2023-09-29
James Procter
JAL-4090 figures in paematrix doc
commit
|
commitdiff
2023-09-29
James Procter
JAL-4090 fix url to new cli docs
commit
|
commitdiff
2023-09-28
James Procter
JAL-4090 JAL-3855 figure showing PAEs for epas1 homolog...
commit
|
commitdiff
2023-09-28
James Procter
JAL-1556 JAL-4090 colour by annotation options on annot...
commit
|
commitdiff
2023-09-26
James Procter
JAL-3858 JAL-4090 pae matrix docs. WIP
commit
|
commitdiff
2023-09-25
James Procter
JAL-3858 JAL-4090 PAE documentation..
commit
|
commitdiff
2023-09-25
James Procter
JAL-4090 fix link...
commit
|
commitdiff
2023-09-22
James Procter
Merge branch 'develop' into releases/Release_2_11_3_Branch
commit
|
commitdiff
2023-09-22
James Procter
fix link...
commit
|
commitdiff
2023-09-22
James Procter
JAL-4090 smaller associate PDB file panel image in...
commit
|
commitdiff
2023-09-21
James Procter
Merge branch 'develop' into releases/Release_2_11_3_Branch
commit
|
commitdiff
2023-09-21
James Procter
JAL-4090 what’s new and additional help docs for JAL...
commit
|
commitdiff
2023-09-21
James Procter
JAL-4090 JAL-4262 JAL-4265 release notes
commit
|
commitdiff
2023-09-21
James Procter
JAL-3858 JAL-3855 documentation for import and display...
commit
|
commitdiff
2023-09-21
Ben Soares
JAL-4265 Use ColourUtils.parseColourString() for consis...
merge/JAL-4262+JAL-4265+JAL-4269+JAL-4274+JAL-4277+JAL-4285
commit
|
commitdiff
2023-09-20
Ben Soares
JAL-629 Explanation of \{m\} in case anyone actually...
commit
|
commitdiff
2023-09-20
Ben Soares
JAL-629 Add link and example for BioJS image output
commit
|
commitdiff
2023-09-20
Ben Soares
JAL-629 Make arguments appear correctly using all non...
commit
|
commitdiff
2023-09-20
Ben Soares
JAL-629 Added/corrected/tidied documentation
commit
|
commitdiff
2023-09-19
Ben Soares
JAL-629 JAL-4265 JAL-4269 Updated help Documentation
commit
|
commitdiff
2023-09-19
Ben Soares
JAL-629 JAL-4265 JAL-4269 Updated help Documentation
commit
|
commitdiff
2023-09-07
James Procter
JAL-4090 release notes for JAL-244 JAL-901 JAL-4260...
merge/JAL-244+JAL-629+JAL-3416+JAL-3421+JAL-3820+JAL-3830+JAL-4001+JAL-4160+JAL-4189+JAL-4214+JAL-4242+JAL-4255_Updates_to_these_issues_branches_with_merge_conflicts_resolved-bens_stuff
commit
|
commitdiff
2023-09-07
James Procter
JAL-4279 move on if the file doesn't exist, or Identify...
commit
|
commitdiff
2023-09-07
James Procter
JAL-4090 JAL-4160 JAL-4274 image export dimensions...
commit
|
commitdiff
2023-09-07
James Procter
JAL-4273 release notes for visible adjuster marks,...
commit
|
commitdiff
2023-09-07
James Procter
JAL-4090 report JAL-4261 known issue
commit
|
commitdiff
2023-08-28
Ben Soares
Merge branch 'develop' into merge/big_merge_of_bens_stu...
commit
|
commitdiff
2023-08-28
James Procter
JAL-4090 JAL-4250 JAL-4253 JAL-325 release notes and...
commit
|
commitdiff
2023-08-18
Ben Soares
Merge branch 'improvement/JAL-3830_remove_dock_icon_in_...
commit
|
commitdiff
2023-08-17
Ben Soares
Merge branch 'feature/JAL-629_--output_-_means_output_t...
commit
|
commitdiff
2023-08-17
Ben Soares
JAL-3830 JAL-4160 Remove --noheadless as --gui does...
commit
|
commitdiff
2023-08-17
James Procter
JAL-4090 JAL-4243 bio.tools json file release notes
commit
|
commitdiff
2023-08-10
Ben Soares
JAL-629 STDOUT documentation. Opt.STDOUT narrower...
commit
|
commitdiff
2023-07-23
James Procter
JAL-4090 JAL-4243 bio.tools json file release notes
commit
|
commitdiff
2023-07-17
James Procter
JAL-4090 JAL-4165 known issue
commit
|
commitdiff
2023-07-17
James Procter
JAL-4090 JAL-4165 known issue
commit
|
commitdiff
2023-07-17
James Procter
JAL-4090 mark JAL-4178 and JAL-4142 as known issues
commit
|
commitdiff
2023-07-07
James Procter
JAL-4090 update 2.11.3.0 release notes (with in-progres...
commit
|
commitdiff
2023-07-04
James Procter
JAL-4117 Fri June 30th release of 2.11.2.7 with Jalview...
commit
|
commitdiff
2023-06-30
James Procter
JAL-4117 Fri June 30th release of 2.11.2.7 with Jalview...
commit
|
commitdiff
2023-06-30
James Procter
JAL-4216 release notes
commit
|
commitdiff
2023-06-29
James Procter
JAL-4216 release notes
commit
|
commitdiff
2023-06-29
James Procter
JAL-4117 JAL-4001 plausible analytics release notes...
commit
|
commitdiff
2023-06-29
James Procter
JAL-4090 update from 2.11.2.7 JAL-4117 - version bump...
commit
|
commitdiff
2023-06-29
James Procter
JAL-4117 JAL-4001 plausible analytics release notes...
commit
|
commitdiff
2023-06-07
James Procter
Merge branch 'patch/JAL-4195_cli_eps_export_npe' into...
commit
|
commitdiff
2023-06-07
Ben Soares
Merge branch 'develop' into improvement/JAL-4193_cl_arg...
improvement/JAL-4193_cl_arg_prevent_startup_file
commit
|
commitdiff
2023-06-06
James Procter
JAL-4160 --colour can now take user defined scheme...
commit
|
commitdiff
2023-06-02
James Procter
JAL-4090 update 2.11.3.0 release notes for recent merges
commit
|
commitdiff
2023-06-01
Ben Soares
JAL-4193 JAL-4194 sessionProperties layer in Cache...
commit
|
commitdiff
2023-06-01
Ben Soares
JAL-629 better reference text for --nousagestats
commit
|
commitdiff
2023-05-30
Ben Soares
JAL-629 JAL-4121 Added documentation to Help docs and...
commit
|
commitdiff
2023-05-23
Ben Soares
JAL-629 Updated help docs and fixed structure image...
commit
|
commitdiff
2023-05-23
Ben Soares
JAL-629 Added --structureimage code and formatting...
commit
|
commitdiff
2023-05-18
Ben Soares
JAL-629 fixes to help docs
commit
|
commitdiff
2023-05-17
Ben Soares
JAL-629 Changed some old -arg to --arg in help docs...
commit
|
commitdiff
2023-05-17
Ben Soares
JAL-629 tidying the help docs
commit
|
commitdiff
2023-05-17
Ben Soares
Merge branch 'develop' into features/r2_11_2_alphafold...
commit
|
commitdiff
2023-05-17
James Procter
JAL-4184 release notes
commit
|
commitdiff
2023-05-16
Ben Soares
JAL-629 Finished documentation for new command lines.
commit
|
commitdiff
2023-05-15
Ben Soares
JAL-629 More help text
commit
|
commitdiff
2023-05-13
Ben Soares
JAL-629 launcher shell script uses jalview.bin.Launcher...
commit
|
commitdiff
2023-05-12
Ben Soares
JAL-629 More docs
commit
|
commitdiff
2023-05-11
Ben Soares
JAL-629 Add some shortnames to args. Add Opt.OUTPUT...
commit
|
commitdiff
2023-05-11
Ben Soares
JAL-629 Move clarguments documentation to default....
commit
|
commitdiff
2023-05-10
Ben Soares
JAL-629 More docs. Usage statement. Adjust some logging...
commit
|
commitdiff
2023-05-09
Ben Soares
JAL-629 Add --seqid for non-subval use, make arg value...
commit
|
commitdiff
2023-05-09
Ben Soares
JAL-629 update a subval for structureviewer in the...
commit
|
commitdiff
2023-05-09
Ben Soares
JAL-629 more docs
commit
|
commitdiff
2023-05-03
Ben Soares
JAL-629 a bit more documentation
commit
|
commitdiff
2023-04-28
Ben Soares
JAL-629 Change colour scheme shortnames to something...
commit
|
commitdiff
2023-04-27
Ben Soares
JAL-629 start of help text
commit
|
commitdiff
2023-02-15
James Procter
JAL-4090 move 2.11.3 series release notes to 2.11.3...
commit
|
commitdiff
2023-02-10
James Procter
JAL-840 updated docs - thanks to AMW for verifying...
commit
|
commitdiff
2023-02-03
James Procter
Merge branch 'develop' into features/r2_11_2_alphafold...
commit
|
commitdiff
2023-01-25
James Procter
JAL-4117 - version bump and release notes for JAL-4116
commit
|
commitdiff
2023-01-25
James Procter
Merge branch 'new_feature/JAL-4019_ambiguous_base_colou...
commit
|
commitdiff
2023-01-24
James Procter
JAL-4090 Release 2.11.3.0 release notes and version...
commit
|
commitdiff
2023-01-24
James Procter
Merge branch 'develop' (JAL-4102 2.11.2.6 patch release...
features/r2_11_2_alphafold/JAL-2349_JAL-3855
commit
|
commitdiff
2023-01-23
James Procter
JAL-4104 JAL-4102 update help docs with script to add...
Release_2_11_2_6
commit
|
commitdiff
2023-01-23
Jim Procter
JAL-4102 whatsNew for 2.11.2.6
commit
|
commitdiff
2023-01-20
Jim Procter
JAL-4102 update date and release notes for 2.11.2.6
commit
|
commitdiff
2022-11-30
Jim Procter
JAL-4102 2.11.2.6 hotfix release notes - JAL-4101 JAL...
commit
|
commitdiff
2022-11-17
Ben Soares
JAL-4019 Clarification of position on 'X' in help text
commit
|
commitdiff
2022-11-13
Ben Soares
JAL-4019 small colour fix for X in the documentation
commit
|
commitdiff
2022-11-13
Ben Soares
JAL-4019 attribution to Suzanne
commit
|
commitdiff
2022-11-13
Ben Soares
JAL-4019 Help pages for Nucleotide Ambiguity colour...
commit
|
commitdiff
2022-10-29
Jim Procter
JAL-4090 bump version and set up release notes for...
commit
|
commitdiff
2022-10-29
Jim Procter
Merge branch 'features/JAL-4061_and_JAL-4062_findselect...
commit
|
commitdiff
2022-10-11
Jim Procter
JAL-4065 final fix for 2.11.2.5 - 5pm BST release
commit
|
commitdiff
2022-10-11
Jim Procter
JAL-4065 revised to avoid a visit from the apostrophe...
commit
|
commitdiff
2022-10-11
Ben Soares
JAL-4014 Changed gecos display names to match labels...
commit
|
commitdiff
2022-10-11
Jim Procter
JAL-4065 revised whatsNew to make sense !
commit
|
commitdiff
2022-10-11
Jim Procter
JAL-4065 release 2.11.2.5 date is 11th Oct
commit
|
commitdiff
next