JAL-2788 possible adjustments to sequence accesses
[jalview.git] / src / jalview / api /
2017-10-25 Jim ProcterMerge branch 'bug/JAL-2727closeAllFreeMemory' into...
2017-10-12 Jim ProcterJAL-2773 add new flag to paintAlignment(updateOverview... features/JAL-2773_dontalwaysrecolourstructureonrepaintofoverview
2017-10-11 kiramtJAL-2742 removed unused getViewAsCigars
2017-09-14 gmungocJAL-2727 null more fields in AlignmentViewport.dispose...
2017-09-05 Jim ProcterMerge branch 'master' into portforward/JAL-2675_2102b1t...
2017-09-04 Jim ProcterJAL-2675 source license
2017-09-03 Jim ProcterMerge branch 'feature/JAL-2587' into documentation...
2017-09-03 Jim ProcterMerge branch 'documentation/JAL-2675_release2102b1...
2017-08-30 kiramtMerge branch 'feature/JAL-2664' into feature/JAL-2527
2017-08-29 kiramtJAL-2664 Updates following review feature/JAL-2664
2017-08-21 gmungocMerge branch 'develop' into features/JAL-2446NCList features/JAL-2446NCList
2017-08-16 Jim ProcterJAL-2418 add GPL to main sources
2017-08-16 Jim ProcterJAL-2418 source formatting
2017-08-08 kiramtJAL-2587 Added progress bar to overview. Not fully...
2017-07-23 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-06-01 gmungocJAL-2754 Sequence.findFeatures(fromCol, toCol) features/JAL-2754findFeaturesByColumn
2017-05-23 gmungocJAL-2490 find features for export as GFF, JAL-2548...
2017-05-16 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-05-16 gmungocJAL-2403 simplify instantiation / configuration of...
2017-05-15 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-05-12 Jim ProcterMerge branch 'features/JAL-2435splitScreenFont' into...
2017-05-08 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-05-05 gmungocMerge branch 'develop' into features/JAL-2435splitScree...
2017-05-05 kiramtMerge remote-tracking branch
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into features/JAL-2388hiddencolumnschanges
2017-04-26 gmungocJAL-2490 findFeaturesAtRes with performant feature...
2017-04-24 kiramtMerge remote-tracking branch
2017-04-24 kiramtJAL-2388 Hidden cols separated from column selection...
2017-04-21 kiramtJAL-2388 Alignment col and row collections with iterators
2017-04-11 gmungocJAL-2403 improved ScoreModelI hierarchy as per Kira...
2017-03-31 gmungocJAL-2435 slightly more sensible behaviour changing...
2017-03-30 gmungocMerge branch 'develop' into features/JAL-2435splitScree...
2017-03-27 gmungocJAL-2416 add score model description field for tooltip...
2017-03-24 gmungocJAL-2428 simplify TreeModel constructors, add getOrigin...
2017-03-23 gmungocJAL-2393 code tidy and comments, PIDDistanceModel depre...
2017-03-23 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
2017-03-22 kiramtMerge remote-tracking branch 'origin/develop' into
2017-03-21 Jim ProcterMerge branch 'features/JAL-2388OverviewWindow' into...
2017-03-16 kiramtJAL-2388 Applied ViewportRanges to code
2017-03-16 kiramtJAL-2388 Renamed viewport position props to viewport...
2017-03-15 gmungocJAL-2443 push getResidueBoxColour inside getResidueColour
2017-03-15 gmungocJAL-2438 clarify code and javadoc, reinstate updateFeat...
2017-03-14 gmungocJAL-2438 unit test, fixes, Javadoc updates
2017-03-13 gmungocJAL-2438 corrected handling of default colour
2017-03-13 gmungocJAL-2438 FeatureColourFinder refactored from FeatureRen...
2017-03-08 gmungocJAL-2435 copy font changes across split screen
2017-03-01 gmungocMerge branch 'features/JAL-2295setChimeraAttributes...
2017-02-28 gmungocJAL-1632 'includeGaps' applied to FeatureDistanceModel...
2017-02-28 kiramtJAL-2388 First move of endRes etc out of AlignmentViewp...
2017-02-27 gmungocJAL-838 ScoreMatrix now respects SimilarityParams!
2017-02-24 gmungocJAL-838 added 'SeqSpace' PID mode, added parameters...
2017-02-24 gmungocJAL-838 first version of PID parameters model
2017-02-23 gmungocJAL-2403 JAL-1483 changes to ScoreModelI hierarchy...
2017-02-20 gmungocJAL-2403 ScoreModelI now DistanceModelI, ScoreMatrix...
2017-02-17 gmungocJAL-2416 removed DNA and PAM250 matrices from ResiduePr...
2017-02-13 gmungocJAL-1632 first cut of Tree chooser dialog and ScoreMode...
2017-02-09 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-02-09 kiramtJAL-2388 Initial refactor of OverviewPanel
2017-01-31 gmungocJAL-2371 rename global/viewportColourScheme to residueS...
2017-01-31 gmungocJAL-2385 more tests/bug fixes mostly for gui.SliderPane...
2017-01-27 gmungocJAL-2371 CollectionColourScheme renamed ResidueShader...
2017-01-04 gmungocJAL-2371 CollectionColourScheme wraps ColourSchemeI
2016-12-01 Jim ProcterJAL-1933 basic hack to get gap counts shown as an annot...
2016-11-25 gmungocMerge branch 'develop' into trialMerge
2016-11-22 Jim ProcterMerge branch 'features/JAL-1738_JAL-345_selectionfromhi...
2016-11-17 gmungocJAL-98 ProfilesI container for profiles for columns
2016-11-16 Jim ProcterMerge branch 'features/JAL-1723_sequenceReport' into...
2016-11-02 gmungocJAL-98 ProfileI interface for Profile
2016-11-02 gmungocJAL-98 Profile and ResidueCount moved from analysis...
2016-10-31 gmungocJAL-1723 ellipsis in tooltip if xrefs to more than...
2016-10-30 Jim ProcterJAL-1738 JAL-345 new controller method based on mark...
2016-10-28 Jim ProcterJAL-966 SearchResultsI now on viewmodels.AlignmentViewp...
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch
2016-10-06 gmungocMerge branch 'develop' into bug/JAL-98consensusMemory
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch...
2016-10-05 Jim ProcterJAL-2189 apply license
2016-10-05 Jim ProcterJAL-2189 source formatting
2016-10-03 gmungocJAL-98 use Profile to store consensus, ResidueCount...
2016-09-22 gmungocJAL-2216 new dispose() method to null references
2016-09-19 gmungocJAL-2172 test and code updates for readonly selection...
2016-09-07 Jim ProcterMerge branch 'develop' into bug/JAL-1803_JAL-2157
2016-09-06 gmungocJAL-2106 DBRefEntry.isPrimary() renamed isPrimaryCandid...
2016-09-05 gmungocJAL-2106 corrections to DBRefEntry.isPrimary code and...
2016-08-31 Jim ProcterJAL-2034 moved ‘isDefinedGroup’ flag to a test method...
2016-08-30 gmungocMerge branch 'develop' into features/filetypeEnum
2016-08-24 Jim ProcterJAL-2106 DBRefEntry.isPrimary() minimal test & implemen...
2016-08-02 Jim ProcterJAL-2068 reinstated false return value for notifyWorking
2016-07-20 Jim ProcterJAL-1926 JAL-2106 remove startRes/endRes fields - not...
2016-07-18 Jim ProcterMerge branch 'features/JAL-2068groovyAnnotationWorker...
2016-07-11 gmungocfile format enum wip changes
2016-06-28 tcofoegbuJAL-1479 improved SiftsClient test coverage and impleme...
2016-06-21 Jim ProcterMerge branch 'features/JAL-1956_featureStyles' into...
2016-06-20 Jim ProcterMerge branch 'develop' into features/JAL-2068groovyAnno... features/JAL-2068groovyAnnotationWorker
2016-06-02 tcofoegbuJAL-1944 java doc update and minor house keeping
2016-06-01 tcofoegbuMerge branch 'develop' of https://source.jalview.org...
2016-06-01 tcofoegbuJAL-1944 updated bugfix implementation
2016-05-31 Jim ProcterJAL-1551 JAL-2106 javadoc
2016-05-31 Jim ProcterJAL-2110 abstract methods should never reference their...
2016-05-31 tcofoegbumerge
2016-05-31 tcofoegbuJAL-1944 fix for visible seqs sometimes been replaced...
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