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fix for JAL-2922 - update states all at once and then refresh
[jalview.git]
/
src
/
jalview
/
appletgui
/
2016-12-05
kiramt
JAL-2316 Adjusted unit tests. Tidied UrlLinkProviderI...
tree
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commitdiff
2016-12-01
gmungoc
JAL-2346 restore choice of annotation for colouring...
tree
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commitdiff
2016-11-25
gmungoc
Merge branch 'develop' into trialMerge
tree
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commitdiff
2016-11-24
gmungoc
Distinguish text-only output formats and others (.jar...
tree
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commitdiff
2016-11-24
gmungoc
FileFormatI further tweaks, clean compile
tree
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commitdiff
2016-11-22
Jim Procter
Merge branch 'features/JAL-2177_update_jmol_to_14.6...
tree
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commitdiff
2016-11-22
gmungoc
JAL-1919 JAL-2177 handle empty pdbentries list correctly
features/JAL-2177_update_jmol_to_14.6.4_2016.10.26
tree
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commitdiff
2016-11-22
Jim Procter
Merge branch 'features/JAL-1738_JAL-345_selectionfromhi...
tree
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commitdiff
2016-11-16
Jim Procter
Merge branch 'features/JAL-1723_sequenceReport' into...
tree
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commitdiff
2016-11-15
kiramt
JAL-2316 Moved url providers into own package
tree
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commitdiff
2016-11-15
kiramt
JAL-2316 Refactoring of functionality to provide urls...
tree
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commitdiff
2016-11-10
tcofoegbu
Bugfix to enable accurate chain extraction/association...
tree
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commitdiff
2016-11-04
kiramt
JAL-2282 Remove Cache dependency from applet
tree
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commitdiff
2016-11-04
gmungoc
JAL-966 JAL-1854 removed redundant methods / modifiers...
tree
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commitdiff
2016-11-03
kiramt
JAL-2282 Link menu disabled if there are no valid links
tree
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commitdiff
2016-11-03
gmungoc
JAL-2310 don't double-count sequence matches; code...
tree
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commitdiff
2016-11-02
kiramt
Merge remote-tracking branch 'origin/bug/JAL-2282'...
tree
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commitdiff
2016-11-02
kiramt
JAL-2282 Refactor applet too
tree
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commitdiff
2016-11-02
Jim Procter
JAL-966 JAL-345 JAL-1738 quick rewrite of scrollToPosit...
tree
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commitdiff
2016-11-02
gmungoc
JAL-98 JAL-1854 encapsulate 'magic number' threshold...
tree
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commitdiff
2016-11-02
kiramt
JAL-2282 Renamed internal use of sequence id / db acces...
tree
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commitdiff
2016-11-01
kiramt
JAL-2282 Removed unexpected ; from code
tree
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commitdiff
2016-11-01
kiramt
JAL-2282 Force double-clicking to use sequence_id cases...
tree
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commitdiff
2016-10-31
gmungoc
Merge branch 'develop' into features/JAL-1723_sequenceR...
tree
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commitdiff
2016-10-31
kiramt
Force double-clicking to use sequence_id cases and...
tree
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commitdiff
2016-10-28
Jim Procter
JAL-966 SearchResultsI now on viewmodels.AlignmentViewp...
tree
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commitdiff
2016-10-28
Jim Procter
JAL-966 JAL-1738 JAL-345 interfaces for SearchResults...
tree
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commitdiff
2016-10-27
tcofoegbu
JAL-2177 Jmol update from: Jmol-14.2.14_2015.06.11...
tree
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commitdiff
2016-10-25
Jim Procter
JAL-2089 patch broken merge to master for Release 2...
releases/Release_2_10_0_Branch
tree
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commitdiff
2016-10-24
Jim Procter
Merge branch 'releases/Release_2_10_0_Branch'
tree
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commitdiff
2016-10-24
Jim Procter
JAL-2197 add jpredfile as alternative form of jnetfile...
tree
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commitdiff
2016-10-21
kiramt
Factored URL Link constants out into UrlConstants file.
tree
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commitdiff
2016-10-14
gmungoc
Merge branch 'releases/Release_2_10_Branch' into task...
task/JAL-2196pdbeProperties
tree
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commitdiff
2016-10-11
gmungoc
JAL-2233 reverted changes to Jmol logging levels
tree
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commitdiff
2016-10-06
gmungoc
Merge branch 'develop' into task/JAL-2196pdbeProperties
tree
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commitdiff
2016-10-06
Jim Procter
JAL-2089 Merge branch releases/Release_2_10_Branch...
tree
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commitdiff
2016-10-05
Jim Procter
JAL-2189 source formatting
tree
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commitdiff
2016-10-05
gmungoc
Merge branch 'develop' into task/JAL-2196pdbeProperties
tree
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commitdiff
2016-09-30
gmungoc
JAL-2236 fixes for desktop and applet implementation...
tree
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commitdiff
2016-09-29
Jim Procter
JAL-2236 include associated sequence id for annotation...
tree
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commitdiff
2016-09-27
gmungoc
JAL-2233 less verbose logging for Jmol
tree
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commitdiff
2016-09-22
gmungoc
JAL-1421 typed ResidueProperties.propHash; JAL-2176...
tree
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commitdiff
2016-09-22
gmungoc
JAL-2216 finalize call super.finalize()
tree
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commitdiff
2016-09-19
gmungoc
JAL-2172 test and code updates for readonly selection...
tree
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commitdiff
2016-09-13
gmungoc
JAL-2196 refactor PDBEntry.getProperty,setProperty...
tree
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commitdiff
2016-09-01
Jim Procter
Merge branch 'bug/JAL-2034_fix' into develop
tree
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commitdiff
2016-09-01
gmungoc
JAL-1421 add generics to NJTree, refactor recursive...
tree
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commitdiff
2016-08-31
Jim Procter
JAL-2034 moved ‘isDefinedGroup’ flag to a test method...
tree
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commitdiff
2016-08-30
gmungoc
Merge branch 'develop' into features/filetypeEnum
tree
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commitdiff
2016-08-26
gmungoc
Merge branch 'develop' into bug/JAL-1841rnaSecStr
tree
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commitdiff
2016-08-24
gmungoc
JAL-1355 correct 'thereshold' to 'threshold' in message...
tree
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commitdiff
2016-08-24
gmungoc
JAL-1424 removed unused and duplicated message keys
tree
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commitdiff
2016-08-24
gmungoc
JAL-2151 port fix to applet
tree
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commitdiff
2016-08-18
gmungoc
Merge branch 'develop' into bug/JAL-1841rnaSecStr
tree
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commitdiff
2016-08-17
gmungoc
JAL-2146 status message now with formatted residue...
tree
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commitdiff
2016-08-17
gmungoc
JAL-2173 don't remove annotation from hidden columns
tree
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commitdiff
2016-08-16
gmungoc
JAL-2171 matching bracket default character for rna...
tree
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commitdiff
2016-08-12
gmungoc
JAL-2171 default SS symbol to existing (if present)
tree
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commitdiff
2016-08-10
gmungoc
JAL-2124 i18n of 'All' menu item
tree
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commitdiff
2016-08-10
gmungoc
JAL-2146 show Column no [Sequence no [Residue / pos...
tree
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commitdiff
2016-07-19
Jim Procter
Merge branch 'develop' into efficiency/JAL-2034_JAL...
tree
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commitdiff
2016-07-18
Jim Procter
Merge branch 'develop' of source.jalview.org/git/jalvie...
tree
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commitdiff
2016-07-18
Jim Procter
JAL-666 patch JAL-1947 in applet where overview is...
tree
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commitdiff
2016-07-18
gmungoc
JAL-2099 ensure initial setting of scaleAbove reaches...
tree
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commitdiff
2016-07-18
gmungoc
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2016-07-18
gmungoc
JAL-2099 JAL-2100 port scale number / hidden column...
tree
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commitdiff
2016-07-18
gmungoc
JAL-2015 restore check for null colour in paint()
tree
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commitdiff
2016-07-18
Jim Procter
Merge branch 'features/JAL-2068groovyAnnotationWorker...
tree
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commitdiff
2016-07-12
gmungoc
FileFormat enum wip changes
tree
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commitdiff
2016-07-11
gmungoc
file format enum wip changes
tree
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commitdiff
2016-06-27
gmungoc
JAL-2133 refactored duplicated code to AlignmentViewport
tree
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commitdiff
2016-06-21
Jim Procter
Merge branch 'features/JAL-1956_featureStyles' into...
tree
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commitdiff
2016-06-20
Jim Procter
JAL-2065 port patch to applet
tree
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commitdiff
2016-06-20
Jim Procter
Merge branch 'develop' into features/JAL-2068groovyAnno...
features/JAL-2068groovyAnnotationWorker
tree
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commitdiff
2016-05-31
Jim Procter
Merge branch 'jims/291patches' into develop
tree
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commitdiff
2016-05-31
gmungoc
JAL-1011 JAL-1989 don't mirror column-only selections...
tree
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commitdiff
2016-05-30
Jim Procter
JAL-1557 allow group associated rows to be used to...
tree
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commitdiff
2016-05-30
Jim Procter
JAL-2077 fix: convenience method and checks for CMD...
tree
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commitdiff
2016-05-30
Jim Procter
JAL-1551 formatting
tree
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commitdiff
2016-05-30
Jim Procter
Merge branch 'develop' into efficiency/JAL-2034_JAL...
tree
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commitdiff
2016-05-27
gmungoc
JAL-1989 tightened up use of flag for 'column selection...
tree
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commitdiff
2016-05-10
gmungoc
Merge branch 'develop' into features/JAL-1956_featureStyles
tree
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commitdiff
2016-05-09
gmungoc
JAL-2018 export graduated feature colours correctly
tree
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commitdiff
2016-05-04
gmungoc
JAL-2092 hide columns with/without feature
tree
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commitdiff
2016-05-04
gmungoc
JAL-2090 removed test for Java > 1.1 to enable transparency
tree
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commitdiff
2016-05-03
gmungoc
JAL-2068 minimised jalview.gui imports, test for remove...
tree
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commitdiff
2016-04-27
Jim Procter
JAL-1366 JAL-2086 reinstate bolding of reference sequence
tree
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commitdiff
2016-04-14
gmungoc
JAL-1421 typed map / lists, explicit imports, method...
tree
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commitdiff
2016-04-12
gmungoc
JAL-1723 tooltip dbrefs sorted and limited to two per...
tree
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commitdiff
2016-04-11
Jim Procter
Merge branch 'develop' into efficiency/JAL-2034_JAL...
tree
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commitdiff
2016-04-08
Jim Procter
JAL-2053 fix erratic hidden column marker display
tree
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commitdiff
2016-04-07
Jim Procter
JAL-1722 fix: don’t draw visible regions outside viewpo...
tree
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commitdiff
2016-04-04
Jim Procter
JAL-2001 TODO for new ColumnSelection API
tree
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commitdiff
2016-04-04
Jim Procter
JAL-969 refactor columnselection operation (during...
tree
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commitdiff
2016-03-25
Jim Procter
JAL-2034 break out of redraw loop early if another...
tree
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commitdiff
2016-03-25
Jim Procter
JAL-2034 disable overview updates when extent of a...
tree
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commitdiff
2016-03-25
Jim Procter
JAL-2034 make Escape/select/deselect operations not...
tree
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commitdiff
2016-03-25
Jim Procter
JAL-2034 flag for triggering redraw of overview window...
tree
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commitdiff
2016-03-23
tcofoegbu
JAL-2009 added programmatic custom feature setting...
tree
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commitdiff
2016-03-22
tcofoegbu
JAL-1919 code improvement to make PDB sequence fetcher...
tree
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commitdiff
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