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Merge remote-tracking branch 'origin/develop' into features/JAL-2316
[jalview.git] / src / jalview / appletgui /
2017-01-09 kiramtMerge remote-tracking branch 'origin/develop' into... tree | commitdiff
2017-01-05 gmungocJAL-2374 fix popup out by one and multiple groups bugs tree | commitdiff
2017-01-05 gmungocJAL-2373 set state of Above PID, By Conservation in... tree | commitdiff
2016-12-15 kiramtJAL-2316 Changes following review. tree | commitdiff
2016-12-14 Jim ProcterMerge branch 'patch/JAL-2197_jpredforjnets' into develop tree | commitdiff
2016-12-13 kiramtMerge branch 'develop' into features/JAL-2316 tree | commitdiff
2016-12-12 kiramtJAL-2316 Added jalview.urls.* packages tree | commitdiff
2016-12-05 kiramtJAL-2316 Added UrlProvider factories. Tidied up labelling. tree | commitdiff
2016-12-05 kiramtJAL-2316 Adjusted unit tests. Tidied UrlLinkProviderI... tree | commitdiff
2016-11-25 gmungocMerge branch 'develop' into trialMerge tree | commitdiff
2016-11-24 gmungocDistinguish text-only output formats and others (.jar... tree | commitdiff
2016-11-24 gmungocFileFormatI further tweaks, clean compile tree | commitdiff
2016-11-22 Jim ProcterMerge branch 'features/JAL-2177_update_jmol_to_14.6... tree | commitdiff
2016-11-22 gmungocJAL-1919 JAL-2177 handle empty pdbentries list correctly features/JAL-2177_update_jmol_to_14.6.4_2016.10.26 tree | commitdiff
2016-11-22 Jim ProcterMerge branch 'features/JAL-1738_JAL-345_selectionfromhi... tree | commitdiff
2016-11-16 Jim ProcterMerge branch 'features/JAL-1723_sequenceReport' into... tree | commitdiff
2016-11-15 kiramtJAL-2316 Moved url providers into own package tree | commitdiff
2016-11-15 kiramtJAL-2316 Refactoring of functionality to provide urls... tree | commitdiff
2016-11-10 tcofoegbuBugfix to enable accurate chain extraction/association... tree | commitdiff
2016-11-04 kiramtJAL-2282 Remove Cache dependency from applet tree | commitdiff
2016-11-04 gmungocJAL-966 JAL-1854 removed redundant methods / modifiers... tree | commitdiff
2016-11-03 kiramtJAL-2282 Link menu disabled if there are no valid links tree | commitdiff
2016-11-03 gmungocJAL-2310 don't double-count sequence matches; code... tree | commitdiff
2016-11-02 kiramtMerge remote-tracking branch 'origin/bug/JAL-2282'... tree | commitdiff
2016-11-02 kiramtJAL-2282 Refactor applet too tree | commitdiff
2016-11-02 Jim ProcterJAL-966 JAL-345 JAL-1738 quick rewrite of scrollToPosit... tree | commitdiff
2016-11-02 gmungocJAL-98 JAL-1854 encapsulate 'magic number' threshold... tree | commitdiff
2016-11-02 kiramtJAL-2282 Renamed internal use of sequence id / db acces... tree | commitdiff
2016-11-01 kiramtJAL-2282 Removed unexpected ; from code tree | commitdiff
2016-11-01 kiramtJAL-2282 Force double-clicking to use sequence_id cases... tree | commitdiff
2016-10-31 gmungocMerge branch 'develop' into features/JAL-1723_sequenceR... tree | commitdiff
2016-10-31 kiramtForce double-clicking to use sequence_id cases and... tree | commitdiff
2016-10-28 Jim ProcterJAL-966 SearchResultsI now on viewmodels.AlignmentViewp... tree | commitdiff
2016-10-28 Jim ProcterJAL-966 JAL-1738 JAL-345 interfaces for SearchResults... tree | commitdiff
2016-10-27 tcofoegbuJAL-2177 Jmol update from: Jmol-14.2.14_2015.06.11... tree | commitdiff
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch tree | commitdiff
2016-10-24 Jim ProcterMerge branch 'releases/Release_2_10_0_Branch' tree | commitdiff
2016-10-24 Jim ProcterJAL-2197 add jpredfile as alternative form of jnetfile... tree | commitdiff
2016-10-21 kiramtFactored URL Link constants out into UrlConstants file. tree | commitdiff
2016-10-14 gmungocMerge branch 'releases/Release_2_10_Branch' into task... task/JAL-2196pdbeProperties tree | commitdiff
2016-10-11 gmungocJAL-2233 reverted changes to Jmol logging levels tree | commitdiff
2016-10-06 gmungocMerge branch 'develop' into task/JAL-2196pdbeProperties tree | commitdiff
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch... tree | commitdiff
2016-10-05 Jim ProcterJAL-2189 source formatting tree | commitdiff
2016-10-05 gmungocMerge branch 'develop' into task/JAL-2196pdbeProperties tree | commitdiff
2016-09-30 gmungocJAL-2236 fixes for desktop and applet implementation... tree | commitdiff
2016-09-29 Jim ProcterJAL-2236 include associated sequence id for annotation... tree | commitdiff
2016-09-27 gmungocJAL-2233 less verbose logging for Jmol tree | commitdiff
2016-09-22 gmungocJAL-1421 typed ResidueProperties.propHash; JAL-2176... tree | commitdiff
2016-09-22 gmungocJAL-2216 finalize call super.finalize() tree | commitdiff
2016-09-19 gmungocJAL-2172 test and code updates for readonly selection... tree | commitdiff
2016-09-13 gmungocJAL-2196 refactor PDBEntry.getProperty,setProperty... tree | commitdiff
2016-09-01 Jim ProcterMerge branch 'bug/JAL-2034_fix' into develop tree | commitdiff
2016-09-01 gmungocJAL-1421 add generics to NJTree, refactor recursive... tree | commitdiff
2016-08-31 Jim ProcterJAL-2034 moved ‘isDefinedGroup’ flag to a test method... tree | commitdiff
2016-08-30 gmungocMerge branch 'develop' into features/filetypeEnum tree | commitdiff
2016-08-26 gmungocMerge branch 'develop' into bug/JAL-1841rnaSecStr tree | commitdiff
2016-08-24 gmungocJAL-1355 correct 'thereshold' to 'threshold' in message... tree | commitdiff
2016-08-24 gmungocJAL-1424 removed unused and duplicated message keys tree | commitdiff
2016-08-24 gmungocJAL-2151 port fix to applet tree | commitdiff
2016-08-18 gmungocMerge branch 'develop' into bug/JAL-1841rnaSecStr tree | commitdiff
2016-08-17 gmungocJAL-2146 status message now with formatted residue... tree | commitdiff
2016-08-17 gmungocJAL-2173 don't remove annotation from hidden columns tree | commitdiff
2016-08-16 gmungocJAL-2171 matching bracket default character for rna... tree | commitdiff
2016-08-12 gmungocJAL-2171 default SS symbol to existing (if present) tree | commitdiff
2016-08-10 gmungocJAL-2124 i18n of 'All' menu item tree | commitdiff
2016-08-10 gmungocJAL-2146 show Column no [Sequence no [Residue / pos... tree | commitdiff
2016-07-19 Jim ProcterMerge branch 'develop' into efficiency/JAL-2034_JAL... tree | commitdiff
2016-07-18 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... tree | commitdiff
2016-07-18 Jim ProcterJAL-666 patch JAL-1947 in applet where overview is... tree | commitdiff
2016-07-18 gmungocJAL-2099 ensure initial setting of scaleAbove reaches... tree | commitdiff
2016-07-18 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-07-18 gmungocJAL-2099 JAL-2100 port scale number / hidden column... tree | commitdiff
2016-07-18 gmungocJAL-2015 restore check for null colour in paint() tree | commitdiff
2016-07-18 Jim ProcterMerge branch 'features/JAL-2068groovyAnnotationWorker... tree | commitdiff
2016-07-12 gmungocFileFormat enum wip changes tree | commitdiff
2016-07-11 gmungocfile format enum wip changes tree | commitdiff
2016-06-27 gmungocJAL-2133 refactored duplicated code to AlignmentViewport tree | commitdiff
2016-06-21 Jim ProcterMerge branch 'features/JAL-1956_featureStyles' into... tree | commitdiff
2016-06-20 Jim ProcterJAL-2065 port patch to applet tree | commitdiff
2016-06-20 Jim ProcterMerge branch 'develop' into features/JAL-2068groovyAnno... features/JAL-2068groovyAnnotationWorker tree | commitdiff
2016-05-31 Jim ProcterMerge branch 'jims/291patches' into develop tree | commitdiff
2016-05-31 gmungocJAL-1011 JAL-1989 don't mirror column-only selections... tree | commitdiff
2016-05-30 Jim ProcterJAL-1557 allow group associated rows to be used to... tree | commitdiff
2016-05-30 Jim ProcterJAL-2077 fix: convenience method and checks for CMD... tree | commitdiff
2016-05-30 Jim ProcterJAL-1551 formatting tree | commitdiff
2016-05-30 Jim ProcterMerge branch 'develop' into efficiency/JAL-2034_JAL... tree | commitdiff
2016-05-27 gmungocJAL-1989 tightened up use of flag for 'column selection... tree | commitdiff
2016-05-10 gmungocMerge branch 'develop' into features/JAL-1956_featureStyles tree | commitdiff
2016-05-09 gmungocJAL-2018 export graduated feature colours correctly tree | commitdiff
2016-05-04 gmungocJAL-2092 hide columns with/without feature tree | commitdiff
2016-05-04 gmungocJAL-2090 removed test for Java > 1.1 to enable transparency tree | commitdiff
2016-05-03 gmungocJAL-2068 minimised jalview.gui imports, test for remove... tree | commitdiff
2016-04-27 Jim ProcterJAL-1366 JAL-2086 reinstate bolding of reference sequence tree | commitdiff
2016-04-14 gmungocJAL-1421 typed map / lists, explicit imports, method... tree | commitdiff
2016-04-12 gmungocJAL-1723 tooltip dbrefs sorted and limited to two per... tree | commitdiff
2016-04-11 Jim ProcterMerge branch 'develop' into efficiency/JAL-2034_JAL... tree | commitdiff
2016-04-08 Jim ProcterJAL-2053 fix erratic hidden column marker display tree | commitdiff
2016-04-07 Jim ProcterJAL-1722 fix: don’t draw visible regions outside viewpo... tree | commitdiff
2016-04-04 Jim ProcterJAL-2001 TODO for new ColumnSelection API tree | commitdiff
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