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Merge branch 'releases/Release_2_11_4_Branch'
[jalview.git]
/
src
/
jalview
/
bin
/ Cache.java
11 days ago
Jim Procter
Merge branch 'releases/Release_2_11_4_Branch'
master
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commitdiff
2024-08-05
Jim Procter
JAL-1551 gradle spotlessApply and doc tweaks
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commitdiff
2024-07-29
Ben Soares
JAL-3631 Add PID to console info - only available in...
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commitdiff
2024-07-26
Ben Soares
JAL-3631 Added an --update option to the jalview.sh...
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commitdiff
2024-06-28
Ben Soares
JAL-3631 Change in user path for locally installed...
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commitdiff
2024-06-25
Ben Soares
JAL-3631 JAL-3384 Install4j launch now redirects STDOUT...
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commitdiff
2024-06-24
Ben Soares
JAL-3631 Report getCanonicalPath for installer appdir
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commitdiff
2024-06-21
Ben Soares
JAL-3631 Changed label for consistency
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commitdiff
2024-06-19
Ben Soares
JAL-3631 Rename/rationalise informational system proper...
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commitdiff
2024-06-14
Ben Soares
JAL-3631 JAL-4104 More consistent system property names...
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commitdiff
2024-06-12
Ben Soares
JAL-3631 Name changes to system properties and a fallba...
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commitdiff
2024-05-27
Ben Soares
Merge branch 'develop' into improvement/JAL-4409_implem...
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commitdiff
2024-05-13
Ben Soares
JAL-1054 Fix wrappers for following http->https redirects
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commitdiff
2024-05-13
Ben Soares
JAL-1054 Add wrappers for URL.openConnection(), URL...
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commitdiff
2024-04-30
Renia Correya
JAL-4392 Merging consensus secondary structure
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commitdiff
2023-11-16
James Procter
Merge branch 'releases/Release_2_11_3_Branch'
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commitdiff
2023-11-03
James Procter
JAL-4090 JAL-1551 spotlessApply
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commitdiff
2023-10-11
Ben Soares
JAL-4298 Added diagnostics and minor dimension changes...
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commitdiff
2023-10-05
Ben Soares
JAL-4298 Fixed initial log level to see .jalview_proper...
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commitdiff
2023-09-20
James Procter
JAL-4195 JAL-1069 JAL-4160 errors in Cache should go...
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commitdiff
2023-09-13
Ben Soares
JAL-4274 Use Cache BITMAP_* if no other image restricti...
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commitdiff
2023-09-07
James Procter
JAL-4090 JAL-4160 JAL-4274 image export dimensions...
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commitdiff
2023-08-10
Ben Soares
JAL-629 Change all stdout and stderr output to use...
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commitdiff
2023-06-28
Ben Soares
JAL-4001 remove headless code from analytics
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commitdiff
2023-06-28
Ben Soares
JAL-4001 remove headless code from analytics
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commitdiff
2023-06-22
Ben Soares
JAL-4001 Release_2_11_2 branch with Plausible analytics
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commitdiff
2023-06-21
Ben Soares
JAL-4001 Change wording from google to plausible or...
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commitdiff
2023-06-20
Ben Soares
JAL-4001 rename the init method
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commitdiff
2023-06-20
Ben Soares
JAL-4001 Working Plausible analytics
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commitdiff
2023-06-20
Ben Soares
JAL-4001 Added a genuine client_id (from gtag). Added...
task/JAL-4001_migrate_googleanalytics_to_GA4
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commitdiff
2023-06-16
Ben Soares
JAL-4001 Add a _geo=1 to query string and JSON. Add...
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commitdiff
2023-06-16
Ben Soares
JAL-4001 Remove jgoogleanalytics code and jar
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commitdiff
2023-06-16
Ben Soares
JAL-4001 make page_location the same encoding as the...
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commitdiff
2023-06-08
Ben Soares
JAL-4001 Only send defaultParams for application_launch...
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commitdiff
2023-06-07
Ben Soares
Merge branch 'develop' into task/JAL-4001_migrate_googl...
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2023-06-07
Ben Soares
JAL-4001 GA4 tracking is now ENABLED. Currently loggin...
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commitdiff
2023-06-05
Ben Soares
JAL-4001 untested GA4 client code
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commitdiff
2023-06-01
Ben Soares
Merge branch 'develop' into improvement/JAL-4193_cl_arg...
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commitdiff
2023-06-01
Ben Soares
JAL-4193 JAL-4194 sessionProperties layer in Cache...
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commitdiff
2023-05-22
James Procter
JAL-1551 spotless
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commitdiff
2023-05-19
James Procter
JAL-1551 spotlessApply
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commitdiff
2023-05-19
James Procter
JAL-1551 spotlessApply
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commitdiff
2023-05-11
Ben Soares
JAL-629 Fix --tempfac. Hide non-working --notempfac...
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commitdiff
2023-05-11
Ben Soares
JAL-629 Added linkedId to ArgValuesMap for reference...
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commitdiff
2023-05-10
Ben Soares
JAL-629 More docs. Usage statement. Adjust some logging...
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commitdiff
2023-05-03
Ben Soares
JAL-629 added eps and imagemap. Added --output and...
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commitdiff
2023-03-09
Ben Soares
JAL-629 start of tests
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commitdiff
2023-02-23
Ben Soares
JAL-629 bootstrap args and properties. Remember index...
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commitdiff
2023-02-22
Ben Soares
Merge branch 'develop' into features/r2_11_2_alphafold...
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commitdiff
2023-02-16
James Procter
Merge branch 'features/r2_11_2_alphafold/JAL-629' into...
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commitdiff
2023-01-24
James Procter
JAL-629 don’t trash user’s system property file when...
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commitdiff
2022-09-23
Ben Soares
JAL-3676 extra information about jalview_properties...
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commitdiff
2022-08-08
Jim Procter
Merge branch 'task/JAL-3991_check_actual_JAVA_VERSION_a...
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commitdiff
2022-04-06
Ben Soares
JAL-3991 JAVA_COMPILE_VERSION put into build_properties...
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commitdiff
2022-03-18
Ben Soares
JAL-3978 Using getdowninstanceappdir and getdowninstanc...
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commitdiff
2022-03-18
Ben Soares
JAL-3978 New tasks to build archive 'old' dir with...
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commitdiff
2022-03-08
Jim Procter
JAL-3438 spotless for 2.11.2.0
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commitdiff
2022-03-04
Jim Procter
JAL-3746 JAL-3811 document SHOW_JWS2_SERVICES user...
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commitdiff
2022-03-04
Jim Procter
JAL-3746 JAL-3813 NOIDENTIFIERSSERVICE preference disab...
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commitdiff
2022-03-04
Jim Procter
JAL-3746 JAL-3814 NONEWS property
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commitdiff
2022-02-11
Jim Procter
JAL-3949 - refactor logging from jalview.bin.Cache...
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commitdiff
2022-02-11
Ben Soares
JAL-3949 Complete new abstracted logging framework...
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commitdiff
2022-02-04
Ben Soares
JAL-3949 An attempt at converting to Log4j 2 -- no...
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commitdiff
2021-12-15
Jim Procter
JAL-3933 remove obsolete Castor logging configuration
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commitdiff
2021-12-15
Jim Procter
JAL-3933 configure root logger console appender to...
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commitdiff
2021-12-15
Jim Procter
JAL-3933 remove obsolete Castor logging configuration
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commitdiff
2021-12-15
Jim Procter
JAL-3933 configure root logger console appender to...
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commitdiff
2021-12-14
Ben Soares
JAL-3933 updated log4j and slf4j jars with log4j1.2...
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commitdiff
2021-12-14
Ben Soares
JAL-3933 Updated log4j jars with log4j-2.16.0 and compa...
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commitdiff
2021-09-15
Jim Procter
JAL-3741 http to https (and jar to jvp for exampleFile...
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commitdiff
2021-09-14
Ben Soares
JAL-2422 More helpful highlighting/user guidance of...
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commitdiff
2021-03-04
Ben Soares
JAL-3594 Allow a channel to use a different preferences...
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commitdiff
2021-02-05
Jim Procter
JAL-3813 NOIDENTIFIERSSERVICE preference disables jalvi...
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commitdiff
2021-02-05
Jim Procter
JAL-3812 new argument ‘-nohtmltemplates’ and user prefe...
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commitdiff
2021-02-05
Jim Procter
JAL-3811 document SHOW_JWS2_SERVICES user preference...
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commitdiff
2021-02-05
Jim Procter
JAL-3814 NONEWS property
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commitdiff
2020-12-14
Ben Soares
JAL-3280 Fixed the version checking URL formulation...
Develop-2_11_2_0-d20201215
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commitdiff
2020-12-14
Ben Soares
JAL-3594 Allow setting of getdownappbase and getdowndis...
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commitdiff
2020-12-14
Ben Soares
JAL-3280 Test for remote release build_properties file...
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commitdiff
2020-12-14
Ben Soares
JAL-3280 fixes after CR-JAL-241. Now only checking...
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commitdiff
2020-12-14
Ben Soares
JAL-3280 Pass appbase and appdir from getdown to jalvew...
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commitdiff
2020-12-11
Ben Soares
JAL-3775 JAL-3633 Make java.net.Authenticator code...
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commitdiff
2020-12-09
Ben Soares
JAL-3594 JAL-3728 Added taskbar icons to desktop and...
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commitdiff
2020-11-13
Ben Soares
JAL-3633 last minute refinement so password box doesn...
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commitdiff
2020-11-13
Ben Soares
JAL-3633 Apply (proxy) button enabled when needed
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commitdiff
2020-11-13
Ben Soares
JAL-3633 Small changes to allow future fitting with...
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commitdiff
2020-11-13
Ben Soares
JAL-3275 JAL-3633: JAL-3275 Turned Preferences into...
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commitdiff
2020-11-13
Ben Soares
JAL-3633 Set proxy preferences before web calls in...
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commitdiff
2020-11-13
Ben Soares
JAL-3633 Memory only proxy auth password storage. Open...
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commitdiff
2020-11-12
Ben Soares
JAL-3633 Added Proxy Authentication credentials in...
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commitdiff
2020-11-12
Ben Soares
JAL-3633 Remember system set proxy properties. Add...
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commitdiff
2020-11-05
Ben Soares
JAL-3608 cherry pick of 92cb745e7
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commitdiff
2020-09-17
Jim Procter
JAL-3741 http to https (and jar to jvp for exampleFile...
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commitdiff
2020-09-02
Ben Soares
JAL-3280 Test for remote release build_properties file...
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commitdiff
2020-09-01
Ben Soares
JAL-3280 fixes after CR-JAL-241. Now only checking...
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commitdiff
2020-08-31
Ben Soares
JAL-3280 Pass appbase and appdir from getdown to jalvew...
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commitdiff
2020-08-25
Jim Procter
JAL-3671 hardwire log4j.root logger to INFO to supress...
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commitdiff
2020-08-12
Jim Procter
Merge branch 'task/JAL-3608_property_set_laf_and_tests...
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commitdiff
2020-07-07
Ben Soares
JAL-3608 Changes from code review CR-JAL-236
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commitdiff
2020-07-07
Ben Soares
Merge branch 'bug/JAL-3628_Unable_to_save_update_to_exi...
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