2021-07-25 |
Jim Procter | JAL-3848 add compbio and jalview to direct connection... |
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2020-12-14 |
Jim Procter | Merge branch 'Jalview-JS/develop' into merge_js_develop |
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2020-12-11 |
Mateusz | JAL-3690 Let's enable web services (seriously this... |
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2020-10-26 |
Mateusz Waronwy | JAL-3690 - introduce shutdown method that cleans up... |
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2020-06-18 |
BobHanson | JAL-3659 unnecessary duplication -- test is made in... |
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2020-06-18 |
BobHanson | JAL-3446 unintentially left training message in code. |
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2020-06-17 |
Jim Procter | JAL-3662 JAL-3660 JAL-3561 source formatting |
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2020-06-17 |
Jim Procter | JAL-3660 JAL-3561 output alignment as requested file... cherrypicks/JAL-3660_JAL-3561_JAL-3662_cli_outputformat |
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2020-06-16 |
BobHanson | JAL-3659 proper headless check; skips setProperty for JS |
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2020-06-16 |
BobHanson | JAL-3662 simple fix for CLI not using right format... |
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2020-06-09 |
BobHanson | JAL-3446 from applet; JAL-3374 |
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2020-06-07 |
BobHanson | JAL-3446 reorganized JalviewJSApp (accidentally put... |
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2020-06-07 |
BobHanson | reorganized JalviewJSApp (accidentally put that in... |
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2020-06-07 |
BobHanson | JAL-3446 JavaScript interface |
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2020-06-05 |
BobHanson | JAL-3446 removes all JalviewJSApp dependency from jalvi... |
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2020-06-05 |
BobHanson | Refactoring of Jalview, JalviewAppLoader, JalviewApp... |
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2020-06-03 |
BobHanson | JAL-3446 from JAL-3253 ApplicationSingletonProvider |
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2020-06-03 |
BobHanson | JAL-3446 from JAL-3253 ApplicationSingletonProvider... |
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2020-06-02 |
BobHanson | JAL-3446 from JAL-3253 ApplicationSingletonProvider... |
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2020-06-02 |
BobHanson | JAL-3446 from JAL-3253-applet Desktop and Jws2Discovere... |
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2020-06-02 |
BobHanson | JAL-3626 from JAL-3253-applet Jalview.java |
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2020-06-02 |
BobHanson | JAL-3626 from JAL-3253-applet web page embedding |
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2020-05-18 |
Jim Procter | Merge branch 'alpha/JAL-3362_Jalview_212_alpha' into... |
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2020-04-23 |
Jim Procter | Merge branch 'develop' into alpha/JAL-3362_Jalview_212_... |
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2020-03-30 |
gmungoc | Merge branch 'develop' into Jalview-JS/develop |
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2020-02-27 |
Ben Soares | JAL-3543 remove debugging output improvement/JAL-3543_dont_report_null_versions_in_java_console |
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2020-02-27 |
Ben Soares | JAL-3543 Conditional reporting of Install4j and Getdown... |
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2019-11-22 |
Ben Soares | JAL-3449 install4j version, install4j template version... |
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2019-11-12 |
gmungoc | JAL-3274 resource path correction, code tidying (consta... |
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2019-11-05 |
gmungoc | JAL-3210 JAL-3130 skip Taskbar in JalviewJS |
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2019-11-05 |
gmungoc | JAL-3210 JAL-3330 use SequenceOntologyLite in JalviewJS |
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2019-07-16 |
gmungoc | JAL-3210 Merge branch 'develop' into trialMerge |
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2019-07-10 |
Jim Procter | Merge branch 'merge/JAL-3285_mchmmer_with_211_develop... |
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2019-07-02 |
Jim Procter | Merge branch 'develop' into tasks/JAL-3311_removeVamsasMenu |
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2019-06-26 |
Jim Procter | JAL-3334 fix - always load full SO to resolve the seque... |
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2019-06-26 |
Jim Procter | JAL-3111 get rid of nasty tab characters |
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2019-06-19 |
Ben Soares | JAL-3321 Last pieces of the getdown-launcher.jar upgrad... |
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2019-06-17 |
Jim Procter | JAL-3311 remove menus and documentation relating to... tasks/JAL-3311_removeVamsasMenu |
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2019-06-14 |
Jim Procter | JAL-3111 report build type and commit in stdout from... |
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2019-06-04 |
Jim Procter | Merge branch 'develop' into developtomchmmer |
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2019-05-21 |
Ben Soares | JAL-3247 Launcher start improvements. RPM and DEB no... |
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2019-04-25 |
Ben Soares | JAL-3224 JAL-3225 Some fixes in install4j template... |
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2019-04-25 |
Ben Soares | JAL-3224 JAL-3225 Added lines to check for updates... |
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2019-04-24 |
Jim Procter | Merge branch 'task/JAL-3225_Integration_Gradle_building... |
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2019-04-15 |
Ben Soares | JAL-3130 Helper classes to take Class Exceptions when... |
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2019-04-05 |
hansonr | fixes for Jalview command-line URI code |
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2019-04-03 |
hansonr | replacing @j2sNative with @j2sIgnore where appropriate... |
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2019-04-03 |
hansonr | j2sNative clean-up. Fixes problem with second try of... |
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2019-04-01 |
Ben Soares | JAL-3130 JAL-3007 Added gradle build for Java 11 and... |
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2019-03-27 |
gmungoc | JAL-3032 small formatting and isJS() tidy |
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2019-03-27 |
hansonr | isJS cleanup |
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2019-03-13 |
gmungoc | Merge branch 'develop' into trialMerge |
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2019-03-11 |
gmungoc | Merge branch 'feature/JAL-3127_seqidChainshading' into... |
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2019-03-06 |
gmungoc | JAL-3035 more das bits removed |
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2019-03-06 |
Jim Procter | JAL-3208 re-enable the setprop CLI arg, but only in... |
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2019-02-28 |
gmungoc | JAL-3032 any url parameter not "j2s..." taken as Jalvie... Jalview-BH/JAL-3026-JAL-3063-JAXB |
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2019-02-25 |
gmungoc | JAL-3032 Jalview (as JS) parse query params to main... |
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2019-01-26 |
hansonr | Jalview.isJS() --> Platform.isJS(), DBRefEntry[] -... |
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2019-01-21 |
hansonr | isAMac() -> isAMacAndNotJS(), isWindows() -> isWindowsA... |
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2019-01-18 |
hansonr | canvas line/font/pixel fixes; menu accelerators; |
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2019-01-11 |
hansonr | (commented out but potentially useful) methods to tap... |
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2018-10-17 |
Jim Procter | Merge branch 'feature/JAL-3063JAXB' into Jalview-BH... |
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2018-10-09 |
Jim Procter | JAL-3127 pass reference to AlignViewportI when creating... |
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2018-09-18 |
Jim Procter | JAL-3035 more dedasification |
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2018-09-11 |
Jim Procter | Merge branch 'develop' into releases/Release_2_11_Branch |
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2018-09-05 |
Jim Procter | JAL-3065 - amended commit 4906697ab6e5a79fbce3baae89f7... bug/JAL-3065_DH_keyPair_Exception_nogroovysettings |
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2018-07-23 |
gmungoc | JAL-3056 suppress menu options, and repoint Help, for... |
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2018-07-23 |
Jim Procter | Merge branch 'features/mchmmer' into merge/wsinterfaces... |
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2018-07-17 |
bsoares | JAL-3065 |
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2018-07-11 |
Jim Procter | JAL-3048 refactored export settings to bean+dialog... Jalview-BH/JAL-3048_exportSettingsrefactor |
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2018-06-27 |
hansonr | JAL-3032 just the changes pulled already |
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2018-06-26 |
Jim Procter | Merge branch 'tasks/JAL-3035_remove_dasobert_dependency... |
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2018-06-26 |
Jim Procter | JAL-3035 - jalview-das is no more ! |
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2018-06-23 |
hansonr | JAL-3026 JDesktop/JInternalFrames support + relative... |
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2018-06-20 |
hansonr | update of javajs package; adds org.apache.harmony,... |
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2018-05-28 |
gmungoc | Merge branch 'develop' into features/mchmmer |
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2018-05-09 |
gmungoc | JAL-2714 HMMSearch cutoff by E-Value, Score or None |
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2018-05-09 |
Jim Procter | JAL-2976 fixed bad equivalence check and implemented... |
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2018-05-08 |
gmungoc | Merge branch 'develop' into features/mchmmer |
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2018-05-02 |
Jim Procter | JAL-2976 fallback to Vaqua for Macs that don’t work... |
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2017-10-03 |
gmungoc | JAL-2738 copy to spikes/mungo |
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2017-08-18 |
TZVanaalten | Merge branch 'develop' into features/hmmer |
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2017-08-16 |
Jim Procter | JAL-2418 source formatting |
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2017-08-09 |
TZVanaalten | JAL-2629 removed unnecessary exception throws from... |
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2017-08-07 |
TZVanaalten | JAL-2629 current hmmer commands are now executed in... |
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2017-06-09 |
gmungoc | JAL-2446 merged to spike branch |
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2017-02-27 |
gmungoc | JAL-1632 similarity options on TreeChooser panel affect... |
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2016-12-16 |
gmungoc | JAL-2360 added UserColourScheme.toAppletParameter+test... |
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2016-12-16 |
gmungoc | JAL-2360 getColour() renamed to getColourScheme(),... |
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2016-11-25 |
gmungoc | Merge branch 'develop' into trialMerge |
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2016-11-14 |
tcofoegbu | JAL-2322 Refactored unified architecture for data ... |
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2016-11-11 |
tcofoegbu | JAL-2277 Refactored out duplicated method - printUnwrap... |
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2016-10-26 |
tcofoegbu | JAL-2284 basic support for exporting BioJS MSA viewer... features/JAL-2284_export-biojsmsa-via-cli |
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2016-10-25 |
Jim Procter | JAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch |
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2016-10-06 |
Jim Procter | JAL-2089 Merge branch releases/Release_2_10_Branch... |
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2016-10-05 |
gmungoc | JAL-1191 revert to using SequenceOntologyLite due to... |
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2016-10-05 |
gmungoc | JAL-1191 configure full SO for desktop, SOLite for... |
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2016-08-30 |
gmungoc | Merge branch 'develop' into features/filetypeEnum |
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2016-08-08 |
gmungoc | JAL-2168 document '-nonews' parameter |
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2016-08-05 |
gmungoc | JAL-2168 skip news feed if parameter "-nonews" is supplied |
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