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[jalview.git] / src / jalview / bin / JalviewLite.java

2009-11-23	jprocter	initialise current and defaultAlignFrame and debug...	blob \| commitdiff
2009-11-13	jprocter	make fileparse errors easier to debug by dumping file...	blob \| commitdiff \| diff to current
2009-06-08	jprocter	apply gpl development license	blob \| commitdiff \| diff to current
2009-06-01	jprocter	better decoupling of data loading routines for AJAX	blob \| commitdiff \| diff to current
2009-04-04	jprocter	rejigged jmol check thread to run prior to data loading...	blob \| commitdiff \| diff to current
2009-04-04	jprocter	rejigged jmol check thread to run prior to data loading...	blob \| commitdiff \| diff to current
2008-09-04	jprocter	merge from 2_4_Release branch	blob \| commitdiff \| diff to current
2008-08-12	jprocter	added nojmol parameter to disable check for jmol	blob \| commitdiff \| diff to current
2008-08-05	jprocter	showbutton default is true	blob \| commitdiff \| diff to current
2008-08-04	jprocter	added 'showbutton' applet parameter	blob \| commitdiff \| diff to current
2008-05-26	jprocter	minor bugfix for case when PDB sequence strings are...	blob \| commitdiff \| diff to current
2008-04-10	jprocter	bug fix for Features/Annotations file parameter parsing...	blob \| commitdiff \| diff to current
2007-10-27	jprocter	windowclose handler now calls EmbmenuFrame garbage...	blob \| commitdiff \| diff to current
2007-10-26	jprocter	fixed applet API calls so they operate on the embedded...	blob \| commitdiff \| diff to current
2007-10-12	jprocter	added separator parameter with default of '\|' to contro...	blob \| commitdiff \| diff to current
2007-10-11	jprocter	remove conflict on javascript api	blob \| commitdiff \| diff to current
2007-10-11	jprocter	static debug flag controlling output of excessive info...	blob \| commitdiff \| diff to current
2007-10-10	jprocter	featureGroup show/hide and newView methods for applet...	blob \| commitdiff \| diff to current
2007-05-08	amwaterhouse	remove system.out	blob \| commitdiff \| diff to current
2007-05-01	amwaterhouse	remove system.out	blob \| commitdiff \| diff to current
2007-05-01	amwaterhouse	Can specify PDB chain to map sequence to - only used...	blob \| commitdiff \| diff to current
2007-04-27	amwaterhouse	Add param to Jmol path	blob \| commitdiff \| diff to current
2007-04-17	amwaterhouse	Applet remembers PDBEntries, can launch multiple struct...	blob \| commitdiff \| diff to current
2007-04-17	amwaterhouse	Add system.out for Mcview / Jmol detection	blob \| commitdiff \| diff to current
2007-03-27	amwaterhouse	Updated PDB loading params	blob \| commitdiff \| diff to current
2007-03-26	jprocter	grammar.	blob \| commitdiff \| diff to current
2007-02-27	amwaterhouse	Launch applet jmol	blob \| commitdiff \| diff to current
2007-02-07	amwaterhouse	Formatting	blob \| commitdiff \| diff to current
2007-02-06	amwaterhouse	Applet params cant read tab character	blob \| commitdiff \| diff to current
2007-02-05	amwaterhouse	applet can define groups as parameters	blob \| commitdiff \| diff to current
2007-02-01	amwaterhouse	removed deprecated bits	blob \| commitdiff \| diff to current
2007-01-25	amwaterhouse	load/get Annotation	blob \| commitdiff \| diff to current
2007-01-24	amwaterhouse	Features output for javascript	blob \| commitdiff \| diff to current
2007-01-19	amwaterhouse	Neeed to know protocol for annotation loading	blob \| commitdiff \| diff to current
2007-01-18	amwaterhouse	File Parsing returns Alignments, not Sequence[]	blob \| commitdiff \| diff to current
2006-11-22	amwaterhouse	frameListener must call close if AlignFrame	blob \| commitdiff \| diff to current
2006-11-20	amwaterhouse	currentAlignFrame is public	blob \| commitdiff \| diff to current
2006-08-21	amwaterhouse	header updated	blob \| commitdiff \| diff to current
2006-08-18	amwaterhouse	treeFile = treeFile	blob \| commitdiff \| diff to current
2006-08-15	amwaterhouse	Correct title for sequence parameter applets	blob \| commitdiff \| diff to current
2006-08-15	amwaterhouse	Sequences can be added as parameter	blob \| commitdiff \| diff to current
2006-08-15	amwaterhouse	WRITEABLE_FORMATS and READABLE_FORMATS string []	blob \| commitdiff \| diff to current
2006-08-11	amwaterhouse	param tree replaces treeFile	blob \| commitdiff \| diff to current
2006-06-22	amwaterhouse	ParseFeaturesFile takes protocol as arg	blob \| commitdiff \| diff to current
2006-06-09	amwaterhouse	readAnnotationFile	blob \| commitdiff \| diff to current
2006-06-07	amwaterhouse	Parameter to show feature settings	blob \| commitdiff \| diff to current
2006-05-17	jprocter	added the jnetfile parameter to specify a JNet concise...	blob \| commitdiff \| diff to current
2006-05-10	amwaterhouse	remove import	blob \| commitdiff \| diff to current
2006-05-01	amwaterhouse	Forces init of alignPanel if annotations added	blob \| commitdiff \| diff to current
2006-03-16	amwaterhouse	Allow loading from Zip files	blob \| commitdiff \| diff to current
2006-03-08	amwaterhouse	IdentifyFile should not be static	blob \| commitdiff \| diff to current
2006-02-08	amwaterhouse	FormatAdapter throws exception	blob \| commitdiff \| diff to current
2006-02-03	amwaterhouse	Reads annotation files	blob \| commitdiff \| diff to current
2005-12-22	amwaterhouse	Allow embedded applet	blob \| commitdiff \| diff to current
2005-12-15	amwaterhouse	SetMenuBar(null) when closing frames. Prevents a bug...	blob \| commitdiff \| diff to current
2005-12-12	amwaterhouse	GetAlignment uses active alignment window	blob \| commitdiff \| diff to current
2005-12-09	amwaterhouse	Only load the tree file once, for first alignment	blob \| commitdiff \| diff to current
2005-12-06	amwaterhouse	after merge	blob \| commitdiff \| diff to current
2005-09-28	amwaterhouse	Applet frame name	blob \| commitdiff \| diff to current
2005-09-28	amwaterhouse	Set frame size each applet	blob \| commitdiff \| diff to current
2005-09-28	amwaterhouse	New params	blob \| commitdiff \| diff to current
2005-09-22	amwaterhouse	Create instance of FormatAdapter	blob \| commitdiff \| diff to current
2005-09-15	amwaterhouse	Applet has main method, excutable	blob \| commitdiff \| diff to current
2005-08-09	amwaterhouse	Can give a name to new browser window	blob \| commitdiff \| diff to current
2005-06-30	amwaterhouse	Formatting changes	blob \| commitdiff \| diff to current
2005-06-14	amwaterhouse	Set background colour of applet RGB	blob \| commitdiff \| diff to current
2005-06-08	amwaterhouse	Formatted source	blob \| commitdiff \| diff to current
2005-06-08	amwaterhouse	GPL license added	blob \| commitdiff \| diff to current
2005-05-04	amwaterhouse	Applet files	blob \| commitdiff \| diff to current

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