Merge branch 'develop' into feature/JAL-3416_update_to_flatlaf_3.1.1_with_unpacked_na...
[jalview.git] / src / jalview / bin / JalviewLite.java
2011-01-17 jprocteradditional test - koders.com/java/fid4C9593FE80CE8AA811...
2011-01-17 jprocterwarn user that no JS callbacks will work by default...
2011-01-17 jprocterrevised default separator string expression to avoid...
2011-01-12 jprocterhandlers with no specified alignframe broadcast events...
2011-01-12 jprocter1.1 compat
2011-01-12 jprocterjavascript callback for selection, mousover, and functi...
2010-09-23 jprocterapply jalview code style
2010-09-23 jprocterJalview 2.6 source licence
2010-09-07 jprocterfix for JAL-631
2010-09-02 jprocter1.1 compatibility
2010-08-31 jprocternotes re JAL-623 and JAL-583, new api methods for addin...
2010-08-25 jprocterexcluded methods related to broken Jmol applet binding...
2010-08-20 jprocterrefactored external structure viewer binding API calls...
2010-06-29 jprocternew ajax api methods for linking existing jmol viewers...
2010-06-18 jprocternew jmol/pdb relates api calls
2010-04-30 jprocterjalview 2.5 release banner
2010-04-26 jprocterbuild date output in the About box, and build details...
2010-04-23 jprocterdefault value boolean parameter getter
2009-11-23 jprocterinitialise current and defaultAlignFrame and debug...
2009-11-13 jproctermake fileparse errors easier to debug by dumping file...
2009-06-08 jprocterapply gpl development license
2009-06-01 jprocterbetter decoupling of data loading routines for AJAX
2009-04-04 jprocterrejigged jmol check thread to run prior to data loading...
2009-04-04 jprocterrejigged jmol check thread to run prior to data loading...
2008-09-04 jproctermerge from 2_4_Release branch
2008-08-12 jprocteradded nojmol parameter to disable check for jmol
2008-08-05 jproctershowbutton default is true
2008-08-04 jprocteradded 'showbutton' applet parameter
2008-05-26 jprocterminor bugfix for case when PDB sequence strings are...
2008-04-10 jprocterbug fix for Features/Annotations file parameter parsing...
2007-10-27 jprocterwindowclose handler now calls EmbmenuFrame garbage...
2007-10-26 jprocterfixed applet API calls so they operate on the embedded...
2007-10-12 jprocteradded separator parameter with default of '|' to contro...
2007-10-11 jprocterremove conflict on javascript api
2007-10-11 jprocterstatic debug flag controlling output of excessive info...
2007-10-10 jprocterfeatureGroup show/hide and newView methods for applet...
2007-05-08 amwaterhouseremove system.out
2007-05-01 amwaterhouseremove system.out
2007-05-01 amwaterhouseCan specify PDB chain to map sequence to - only used...
2007-04-27 amwaterhouseAdd param to Jmol path
2007-04-17 amwaterhouseApplet remembers PDBEntries, can launch multiple struct...
2007-04-17 amwaterhouseAdd system.out for Mcview / Jmol detection
2007-03-27 amwaterhouseUpdated PDB loading params
2007-03-26 jproctergrammar.
2007-02-27 amwaterhouseLaunch applet jmol
2007-02-07 amwaterhouseFormatting
2007-02-06 amwaterhouseApplet params cant read tab character
2007-02-05 amwaterhouseapplet can define groups as parameters
2007-02-01 amwaterhouseremoved deprecated bits
2007-01-25 amwaterhouseload/get Annotation
2007-01-24 amwaterhouseFeatures output for javascript
2007-01-19 amwaterhouseNeeed to know protocol for annotation loading
2007-01-18 amwaterhouseFile Parsing returns Alignments, not Sequence[]
2006-11-22 amwaterhouseframeListener must call close if AlignFrame
2006-11-20 amwaterhousecurrentAlignFrame is public
2006-08-21 amwaterhouseheader updated
2006-08-18 amwaterhousetreeFile = treeFile
2006-08-15 amwaterhouseCorrect title for sequence parameter applets
2006-08-15 amwaterhouseSequences can be added as parameter
2006-08-15 amwaterhouseWRITEABLE_FORMATS and READABLE_FORMATS string []
2006-08-11 amwaterhouseparam tree replaces treeFile
2006-06-22 amwaterhouseParseFeaturesFile takes protocol as arg
2006-06-09 amwaterhousereadAnnotationFile
2006-06-07 amwaterhouseParameter to show feature settings
2006-05-17 jprocteradded the jnetfile parameter to specify a JNet concise...
2006-05-10 amwaterhouseremove import
2006-05-01 amwaterhouseForces init of alignPanel if annotations added
2006-03-16 amwaterhouseAllow loading from Zip files
2006-03-08 amwaterhouseIdentifyFile should not be static
2006-02-08 amwaterhouseFormatAdapter throws exception
2006-02-03 amwaterhouseReads annotation files
2005-12-22 amwaterhouseAllow embedded applet
2005-12-15 amwaterhouseSetMenuBar(null) when closing frames. Prevents a bug...
2005-12-12 amwaterhouseGetAlignment uses active alignment window
2005-12-09 amwaterhouseOnly load the tree file once, for first alignment
2005-12-06 amwaterhouseafter merge
2005-09-28 amwaterhouseApplet frame name
2005-09-28 amwaterhouseSet frame size each applet
2005-09-28 amwaterhouseNew params
2005-09-22 amwaterhouseCreate instance of FormatAdapter
2005-09-15 amwaterhouseApplet has main method, excutable
2005-08-09 amwaterhouseCan give a name to new browser window
2005-06-30 amwaterhouseFormatting changes
2005-06-14 amwaterhouseSet background colour of applet RGB
2005-06-08 amwaterhouseFormatted source
2005-06-08 amwaterhouseGPL license added
2005-05-04 amwaterhouseApplet files