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Fixed some broken tests
[jalview.git] / src / jalview / bin /
2007-09-28 jprocterjavadoc for jalview_properties tags tree | commitdiff
2007-08-01 jprocteradded the '-tree' parameter to open a tree from the... tree | commitdiff
2007-07-30 jproctertest cc change revoked. tree | commitdiff
2007-07-30 jproctertest cc tree | commitdiff
2007-05-28 jprocterloglevel property constants and castor validation logge... tree | commitdiff
2007-05-08 amwaterhouseremove system.out tree | commitdiff
2007-05-04 amwaterhouseNew example file for version 2.3 tree | commitdiff
2007-05-04 amwaterhouseNew example file for version 2.3 tree | commitdiff
2007-05-01 amwaterhouseremove system.out tree | commitdiff
2007-05-01 amwaterhouseCan specify PDB chain to map sequence to - only used... tree | commitdiff
2007-04-27 amwaterhouseAdd param to Jmol path tree | commitdiff
2007-04-26 jproctergroovy support without compile-time dependency. tree | commitdiff
2007-04-17 amwaterhouseApplet remembers PDBEntries, can launch multiple struct... tree | commitdiff
2007-04-17 amwaterhouseAdd system.out for Mcview / Jmol detection tree | commitdiff
2007-03-27 amwaterhouseUpdated PDB loading params tree | commitdiff
2007-03-26 jproctergrammar. tree | commitdiff
2007-02-27 amwaterhouseLaunch applet jmol tree | commitdiff
2007-02-07 amwaterhouseFormatting tree | commitdiff
2007-02-06 jprocterhardwired default user questionnaire url and by default... tree | commitdiff
2007-02-06 amwaterhouseApplet params cant read tab character tree | commitdiff
2007-02-05 jproctercommand line hook for questionnaire url argument. tree | commitdiff
2007-02-05 amwaterhouseapplet can define groups as parameters tree | commitdiff
2007-02-02 amwaterhouseLookandFeel must be set in headless state as window... tree | commitdiff
2007-02-01 amwaterhouseremoved deprecated bits tree | commitdiff
2007-01-25 amwaterhouseload/get Annotation tree | commitdiff
2007-01-24 amwaterhouseFeatures output for javascript tree | commitdiff
2007-01-19 amwaterhouseNeeed to know protocol for annotation loading tree | commitdiff
2007-01-18 amwaterhouseFile Parsing returns Alignments, not Sequence[] tree | commitdiff
2006-12-19 amwaterhouseorg.vamsas is now uk.ac.vamsas tree | commitdiff
2006-11-22 amwaterhouseframeListener must call close if AlignFrame tree | commitdiff
2006-11-20 amwaterhousecurrentAlignFrame is public tree | commitdiff
2006-11-06 amwaterhouseRemember fileName in alignFrame tree | commitdiff
2006-11-02 amwaterhouseUse system path separator char tree | commitdiff
2006-10-27 amwaterhouseRename old properties file before writing new tree | commitdiff
2006-10-09 jprocterfixed log4j complaints for vamsas logging (again) tree | commitdiff
2006-10-09 jprocterfixed log4j complaints for vamsas logging. tree | commitdiff
2006-10-09 jprocterimported Vamsas bindings and alpha vamsas client code... tree | commitdiff
2006-09-11 amwaterhouseError message if file not found moved for headless... tree | commitdiff
2006-08-21 amwaterhouseheader updated tree | commitdiff
2006-08-18 amwaterhousetreeFile = treeFile tree | commitdiff
2006-08-15 amwaterhouseCorrect title for sequence parameter applets tree | commitdiff
2006-08-15 amwaterhouseSequences can be added as parameter tree | commitdiff
2006-08-15 amwaterhouseWRITEABLE_FORMATS and READABLE_FORMATS string [] tree | commitdiff
2006-08-11 amwaterhouseparam tree replaces treeFile tree | commitdiff
2006-08-10 amwaterhousefile: is a URL tree | commitdiff
2006-07-07 amwaterhouseColour argument added, to mirror applet view tree | commitdiff
2006-06-22 amwaterhouseParseFeaturesFile takes protocol as arg tree | commitdiff
2006-06-09 amwaterhousereadAnnotationFile tree | commitdiff
2006-06-09 amwaterhouseparseFeaturesFile tree | commitdiff
2006-06-07 amwaterhouseParameter to show feature settings tree | commitdiff
2006-05-17 jprocteradded the jnetfile parameter to specify a JNet concise... tree | commitdiff
2006-05-11 amwaterhouseRecently loaded files, urls, append sequences to Alignment tree | commitdiff
2006-05-10 amwaterhouseremove import tree | commitdiff
2006-05-01 amwaterhouseForces init of alignPanel if annotations added tree | commitdiff
2006-04-07 amwaterhouseModellerOutput set in preferences tree | commitdiff
2006-04-04 amwaterhouseAdd annoations from the command line tree | commitdiff
2006-04-04 amwaterhouseJalview2XML does not use static load tree | commitdiff
2006-03-16 amwaterhouseAllow loading from Zip files tree | commitdiff
2006-03-08 amwaterhouseIdentifyFile should not be static tree | commitdiff
2006-02-08 amwaterhouseFormatAdapter throws exception tree | commitdiff
2006-02-03 amwaterhouseReads annotation files tree | commitdiff
2006-01-12 jprocterensured properties are loaded before loggers are initia... tree | commitdiff
2005-12-22 amwaterhouseAllow embedded applet tree | commitdiff
2005-12-15 amwaterhouseSetMenuBar(null) when closing frames. Prevents a bug... tree | commitdiff
2005-12-12 amwaterhouseGetAlignment uses active alignment window tree | commitdiff
2005-12-09 amwaterhouseOnly load the tree file once, for first alignment tree | commitdiff
2005-12-06 amwaterhouseafter merge tree | commitdiff
2005-10-07 amwaterhouseDon't exit if file not found and not headless tree | commitdiff
2005-09-30 amwaterhouseRemove redundancy in Eclipse tree | commitdiff
2005-09-28 amwaterhouseApplet frame name tree | commitdiff
2005-09-28 amwaterhouseSet frame size each applet tree | commitdiff
2005-09-28 amwaterhouseRemove latestVersion if null tree | commitdiff
2005-09-28 amwaterhouseRemove latestVersion if null tree | commitdiff
2005-09-28 amwaterhouseNew params tree | commitdiff
2005-09-22 amwaterhouseCreate instance of FormatAdapter tree | commitdiff
2005-09-15 amwaterhouseApplet has main method, excutable tree | commitdiff
2005-09-15 amwaterhouseLogger moved to prefs so that class not found error... tree | commitdiff
2005-08-19 amwaterhouseSystem.out if error setting properties tree | commitdiff
2005-08-17 jprocter<No Comment Entered> tree | commitdiff
2005-08-17 amwaterhouseUse getDefault for exampleFile tree | commitdiff
2005-08-17 amwaterhouseDiscover user colours tree | commitdiff
2005-08-15 amwaterhouseJalview Version: tree | commitdiff
2005-08-15 amwaterhouseOutput java version, os version on startup tree | commitdiff
2005-08-09 amwaterhouseCan give a name to new browser window tree | commitdiff
2005-08-09 amwaterhouseProperties file is used in preference to viewport/cache... tree | commitdiff
2005-08-03 amwaterhouseCan run headless=true tree | commitdiff
2005-07-11 amwaterhouseVersion changes tree | commitdiff
2005-07-11 amwaterhouseAdd test case if code version not found tree | commitdiff
2005-07-11 amwaterhouseRelease and build date methods changed tree | commitdiff
2005-07-07 amwaterhouseRuns if no files to open and -nodisplay is not used tree | commitdiff
2005-06-30 amwaterhouseFormatting changes tree | commitdiff
2005-06-14 amwaterhouseSet background colour of applet RGB tree | commitdiff
2005-06-10 jprocteradded logs.Castor.level tree | commitdiff
2005-06-10 jprocteradded castor logger configuration. tree | commitdiff
2005-06-08 amwaterhouseFormatted source tree | commitdiff
2005-06-08 amwaterhouseGPL license added tree | commitdiff
2005-06-02 amwaterhouseCheck startup file is not null tree | commitdiff
2005-05-25 jprocteradded jalview.browser property so a linux user can... tree | commitdiff
2005-05-25 jproctertidied up system.out messages and moved many to stderr. tree | commitdiff
2005-05-24 amwaterhouseURL getresource adds %20 for spaces. Use user.dir instead tree | commitdiff
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