source.jalview.org Git - jalview.git/history

git://source.jalview.org / jalview.git / history

2010-11-04	jprocter	made ws warning dialog optional, and fixed its wording...	tree \| commitdiff
2010-09-23	jprocter	apply jalview code style	tree \| commitdiff
2010-09-23	jprocter	Jalview 2.6 source licence	tree \| commitdiff
2010-09-07	jprocter	fix for JAL-631	tree \| commitdiff
2010-09-02	jprocter	1.1 compatibility	tree \| commitdiff
2010-08-31	jprocter	notes re JAL-623 and JAL-583, new api methods for addin...	tree \| commitdiff
2010-08-31	jprocter	notes re JAL-629	tree \| commitdiff
2010-08-25	jprocter	excluded methods related to broken Jmol applet binding...	tree \| commitdiff
2010-08-20	jprocter	refactored external structure viewer binding API calls...	tree \| commitdiff
2010-08-06	jprocter	interactive/batch mode test for groovy scripting (See...	tree \| commitdiff
2010-06-29	jprocter	new ajax api methods for linking existing jmol viewers...	tree \| commitdiff
2010-06-18	jprocter	new jmol/pdb relates api calls	tree \| commitdiff
2010-06-12	jprocter	documented the -colour command line argument.	tree \| commitdiff
2010-06-09	jprocter	OSX look and feel JAL-577	tree \| commitdiff
2010-06-08	jprocter	followSelections flag now set via user preferences...	tree \| commitdiff
2010-05-14	jprocter	standard function for bootstrapping discovery threads	tree \| commitdiff
2010-05-14	jprocter	allow initLogger to be called multiple times	tree \| commitdiff
2010-04-30	jprocter	jalview 2.5 release banner	tree \| commitdiff
2010-04-26	jprocter	build date output in the About box, and build details...	tree \| commitdiff
2010-04-23	jprocter	default value boolean parameter getter	tree \| commitdiff
2010-04-14	jprocter	profile visualizations are now logos	tree \| commitdiff
2010-03-30	jprocter	group autoannotation and consensus display settings	tree \| commitdiff
2010-02-10	jprocter	das feature fetch followed by png output fixed (bug...	tree \| commitdiff
2010-02-09	jprocter	groupURL link preference variables	tree \| commitdiff
2009-11-23	jprocter	initialise current and defaultAlignFrame and debug...	tree \| commitdiff
2009-11-13	jprocter	make fileparse errors easier to debug by dumping file...	tree \| commitdiff
2009-11-09	jprocter	more spin on GA prompt	tree \| commitdiff
2009-11-09	jprocter	user friendly GA and privacy statement	tree \| commitdiff
2009-10-13	jprocter	prompt user to enable usage stats	tree \| commitdiff
2009-10-13	jprocter	documented privacy settings, versioncheck controlled...	tree \| commitdiff
2009-07-24	jprocter	explicitly grab all permissions for application executi...	tree \| commitdiff
2009-06-19	jprocter	usepicr config property	tree \| commitdiff
2009-06-12	jprocter	retrieve and init vamsas session from vdoc at URL	tree \| commitdiff
2009-06-10	jprocter	com.boxysystems.jgogleanalytics is now an optional...	tree \| commitdiff
2009-06-08	jprocter	clargs documentation, new vamsas session import and...	tree \| commitdiff
2009-06-08	jprocter	ga tracker option and apply gpl development license	tree \| commitdiff
2009-06-08	jprocter	apply gpl development license	tree \| commitdiff
2009-06-01	jprocter	better decoupling of data loading routines for AJAX	tree \| commitdiff
2009-06-01	jprocter	first experiment with GA application use tracking	tree \| commitdiff
2009-04-04	jprocter	rejigged jmol check thread to run prior to data loading...	tree \| commitdiff
2009-04-04	jprocter	rejigged jmol check thread to run prior to data loading...	tree \| commitdiff
2009-03-17	jprocter	sortbytree/nosortbytree and defprop arguments. (defprop...	tree \| commitdiff
2009-03-17	jprocter	new sortbytree default config property	tree \| commitdiff
2009-02-06	jprocter	showunconserved preference	tree \| commitdiff
2008-12-04	jprocter	added local das sequence source CLI and documentation	tree \| commitdiff
2008-12-04	jprocter	allow sequence source to be specified as sequence:mydas...	tree \| commitdiff
2008-12-04	jprocter	local das source properties string constants and routin...	tree \| commitdiff
2008-09-08	jprocter	view settings in view submenu and user preferences...	tree \| commitdiff
2008-09-04	jprocter	merge from 2_4_Release branch	tree \| commitdiff
2008-08-12	jprocter	added nojmol parameter to disable check for jmol	tree \| commitdiff
2008-08-05	jprocter	showbutton default is true	tree \| commitdiff
2008-08-04	jprocter	added 'showbutton' applet parameter	tree \| commitdiff
2008-07-18	jprocter	prevent exception when no default timeout is specified	tree \| commitdiff
2008-06-30	jprocter	safer retrieval of groovy scripts from URLs	tree \| commitdiff
2008-05-26	jprocter	minor bugfix for case when PDB sequence strings are...	tree \| commitdiff
2008-04-29	jprocter	comments and version wget ping timeout fix for when...	tree \| commitdiff
2008-04-21	jprocter	added centre annotation labels menu entry (and commente...	tree \| commitdiff
2008-04-10	jprocter	bug fix for Features/Annotations file parameter parsing...	tree \| commitdiff
2008-02-22	jprocter	typo for AXISLOGLEVEL constant	tree \| commitdiff
2008-01-29	jprocter	groovy scripts can be read from stdin	tree \| commitdiff
2008-01-11	jprocter	added groovy argument for launching a groovy script...	tree \| commitdiff
2008-01-11	jprocter	memory monitor, garbage collection and changed menu...	tree \| commitdiff
2007-11-12	jprocter	javadoc and introduction of dasserver and fetchdas...	tree \| commitdiff
2007-11-12	jprocter	begun adding string constants for source properties	tree \| commitdiff
2007-10-27	jprocter	windowclose handler now calls EmbmenuFrame garbage...	tree \| commitdiff
2007-10-26	jprocter	fixed applet API calls so they operate on the embedded...	tree \| commitdiff
2007-10-12	jprocter	added separator parameter with default of '\|' to contro...	tree \| commitdiff
2007-10-11	jprocter	remove conflict on javascript api	tree \| commitdiff
2007-10-11	jprocter	static debug flag controlling output of excessive info...	tree \| commitdiff
2007-10-10	jprocter	featureGroup show/hide and newView methods for applet...	tree \| commitdiff
2007-09-28	jprocter	javadoc for jalview_properties tags	tree \| commitdiff
2007-08-01	jprocter	added the '-tree' parameter to open a tree from the...	tree \| commitdiff
2007-07-30	jprocter	test cc change revoked.	tree \| commitdiff
2007-07-30	jprocter	test cc	tree \| commitdiff
2007-05-28	jprocter	loglevel property constants and castor validation logge...	tree \| commitdiff
2007-05-08	amwaterhouse	remove system.out	tree \| commitdiff
2007-05-04	amwaterhouse	New example file for version 2.3	tree \| commitdiff
2007-05-04	amwaterhouse	New example file for version 2.3	tree \| commitdiff
2007-05-01	amwaterhouse	remove system.out	tree \| commitdiff
2007-05-01	amwaterhouse	Can specify PDB chain to map sequence to - only used...	tree \| commitdiff
2007-04-27	amwaterhouse	Add param to Jmol path	tree \| commitdiff
2007-04-26	jprocter	groovy support without compile-time dependency.	tree \| commitdiff
2007-04-17	amwaterhouse	Applet remembers PDBEntries, can launch multiple struct...	tree \| commitdiff
2007-04-17	amwaterhouse	Add system.out for Mcview / Jmol detection	tree \| commitdiff
2007-03-27	amwaterhouse	Updated PDB loading params	tree \| commitdiff
2007-03-26	jprocter	grammar.	tree \| commitdiff
2007-02-27	amwaterhouse	Launch applet jmol	tree \| commitdiff
2007-02-07	amwaterhouse	Formatting	tree \| commitdiff
2007-02-06	jprocter	hardwired default user questionnaire url and by default...	tree \| commitdiff
2007-02-06	amwaterhouse	Applet params cant read tab character	tree \| commitdiff
2007-02-05	jprocter	command line hook for questionnaire url argument.	tree \| commitdiff
2007-02-05	amwaterhouse	applet can define groups as parameters	tree \| commitdiff
2007-02-02	amwaterhouse	LookandFeel must be set in headless state as window...	tree \| commitdiff
2007-02-01	amwaterhouse	removed deprecated bits	tree \| commitdiff
2007-01-25	amwaterhouse	load/get Annotation	tree \| commitdiff
2007-01-24	amwaterhouse	Features output for javascript	tree \| commitdiff
2007-01-19	amwaterhouse	Neeed to know protocol for annotation loading	tree \| commitdiff
2007-01-18	amwaterhouse	File Parsing returns Alignments, not Sequence[]	tree \| commitdiff
2006-12-19	amwaterhouse	org.vamsas is now uk.ac.vamsas	tree \| commitdiff
2006-11-22	amwaterhouse	frameListener must call close if AlignFrame	tree \| commitdiff
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