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JAL-580 ensure WUSS annotation string is up to date, pair list regenerated if necessa...
[jalview.git] / src / jalview / bin /
2011-10-27 jprocter(JAL-969) todo test re refactoring and possible change... tree | commitdiff
2011-10-21 jprocterMerge branch 'Release_2_7_Branch_hotfix_JAL-962' into... tree | commitdiff
2011-10-21 jprocter(JAL-965) new api methods to allow features to be loade... tree | commitdiff
2011-10-21 jprocter(JAL-962) rejig parameter processing order so groups... tree | commitdiff
2011-10-11 jprocternormalised logo rendering (JAL-958) tree | commitdiff
2011-10-10 jprocterupdate author list in license for (JAL-826) tree | commitdiff
2011-09-27 jprocteruse jalview properties preference to enable RSBS editor... tree | commitdiff
2011-09-27 jprocterapply version 2.7 copyright tree | commitdiff
2011-09-22 jprocterjalview rss reader based on jswingreader (JAL-943) tree | commitdiff
2011-09-16 jprocterfix for JAL-895 - new exampleFile_2_7.jar and logic... tree | commitdiff
2011-09-16 jprocterJAL-940 - removed legacy service options from preferenc... tree | commitdiff
2011-09-12 jprocterJAL-927 ensure api method calls that affect GUI state... tree | commitdiff
2011-08-17 jprocterJAL-898 - ensure we only remove a clargs progress bar... tree | commitdiff
2011-08-15 jprocterJAL-904 added scrollToRow and scrollToColumn methods... tree | commitdiff
2011-08-05 jprocterfetch groovy script from URL (JAL-899) and show progres... tree | commitdiff
2011-08-03 jprocterrefactored resolvetocodebase code and reused for resour... tree | commitdiff
2011-08-03 jprocterrefactored resolvetocodebase code and reused for resour... tree | commitdiff
2011-07-28 jprocterrefer to local default setting for proxy when connecting to tree | commitdiff
2011-07-28 jprocteradded 'since 2.x notes to parameters'. User configurabl... tree | commitdiff
2011-07-25 jprocteruse proper encoding for storing colour as user preferen... tree | commitdiff
2011-07-22 jprocterdefault parameter for colours in annotation shading... tree | commitdiff
2011-07-22 jproctermethod to get a user default colour (JAL-234) tree | commitdiff
2011-07-03 jprocterextracted jalviewlite API calls as separate interface... tree | commitdiff
2011-05-17 jprocterrefactor to allow distinct StructureSelectionManager... tree | commitdiff
2011-05-05 jprocterimproved javascript callback execution thread and provi... tree | commitdiff
2011-04-08 jprocterimported properties via -props should never be overwritten tree | commitdiff
2011-04-08 jprocterallow groovy scripts to be run when in headless mode... tree | commitdiff
2011-04-07 jprocterallow groovy scripts to be run when in headless mode... tree | commitdiff
2011-04-07 jprocterallow groovy scripts to be run when in headless mode... tree | commitdiff
2011-02-14 jprocterJAL-621 - also renamed list of javascript handlers tree | commitdiff
2011-02-04 jprocterBalascz reported problems - jalview tries to write... tree | commitdiff
2011-02-04 jprocterJAL-761 tree | commitdiff
2011-01-21 jprocterextended mouseover message with absolute sequence posit... tree | commitdiff
2011-01-18 jprocterremoved securityException caused by accessing class... tree | commitdiff
2011-01-18 jprocterrefactored VamsasListener to allow the source of the... tree | commitdiff
2011-01-17 jprocteradditional test - koders.com/java/fid4C9593FE80CE8AA811... tree | commitdiff
2011-01-17 jprocterwarn user that no JS callbacks will work by default... tree | commitdiff
2011-01-17 jprocterrevised default separator string expression to avoid... tree | commitdiff
2011-01-12 jprocterhandlers with no specified alignframe broadcast events... tree | commitdiff
2011-01-12 jprocter1.1 compat tree | commitdiff
2011-01-12 jprocterjavascript callback for selection, mousover, and functi... tree | commitdiff
2011-01-07 jprocterrefactored dropFile allowing known information to be... tree | commitdiff
2010-11-14 jprocterrefactored to decouple dependencies due to FileParse... tree | commitdiff
2010-11-14 jprocterrefactored protocol check to jalview.io.FileParse tree | commitdiff
2010-11-04 jproctermade ws warning dialog optional, and fixed its wording... tree | commitdiff
2010-09-23 jprocterapply jalview code style tree | commitdiff
2010-09-23 jprocterJalview 2.6 source licence tree | commitdiff
2010-09-07 jprocterfix for JAL-631 tree | commitdiff
2010-09-02 jprocter1.1 compatibility tree | commitdiff
2010-08-31 jprocternotes re JAL-623 and JAL-583, new api methods for addin... tree | commitdiff
2010-08-31 jprocternotes re JAL-629 tree | commitdiff
2010-08-25 jprocterexcluded methods related to broken Jmol applet binding... tree | commitdiff
2010-08-20 jprocterrefactored external structure viewer binding API calls... tree | commitdiff
2010-08-06 jprocterinteractive/batch mode test for groovy scripting (See... tree | commitdiff
2010-06-29 jprocternew ajax api methods for linking existing jmol viewers... tree | commitdiff
2010-06-18 jprocternew jmol/pdb relates api calls tree | commitdiff
2010-06-12 jprocterdocumented the -colour command line argument. tree | commitdiff
2010-06-09 jprocterOSX look and feel JAL-577 tree | commitdiff
2010-06-08 jprocterfollowSelections flag now set via user preferences... tree | commitdiff
2010-05-14 jprocterstandard function for bootstrapping discovery threads tree | commitdiff
2010-05-14 jprocterallow initLogger to be called multiple times tree | commitdiff
2010-04-30 jprocterjalview 2.5 release banner tree | commitdiff
2010-04-26 jprocterbuild date output in the About box, and build details... tree | commitdiff
2010-04-23 jprocterdefault value boolean parameter getter tree | commitdiff
2010-04-14 jprocterprofile visualizations are now logos tree | commitdiff
2010-03-30 jproctergroup autoannotation and consensus display settings tree | commitdiff
2010-02-10 jprocterdas feature fetch followed by png output fixed (bug... tree | commitdiff
2010-02-09 jproctergroupURL link preference variables tree | commitdiff
2009-11-23 jprocterinitialise current and defaultAlignFrame and debug... tree | commitdiff
2009-11-13 jproctermake fileparse errors easier to debug by dumping file... tree | commitdiff
2009-11-09 jproctermore spin on GA prompt tree | commitdiff
2009-11-09 jprocteruser friendly GA and privacy statement tree | commitdiff
2009-10-13 jprocterprompt user to enable usage stats tree | commitdiff
2009-10-13 jprocterdocumented privacy settings, versioncheck controlled... tree | commitdiff
2009-07-24 jprocterexplicitly grab all permissions for application executi... tree | commitdiff
2009-06-19 jprocterusepicr config property tree | commitdiff
2009-06-12 jprocterretrieve and init vamsas session from vdoc at URL tree | commitdiff
2009-06-10 jproctercom.boxysystems.jgogleanalytics is now an optional... tree | commitdiff
2009-06-08 jprocterclargs documentation, new vamsas session import and... tree | commitdiff
2009-06-08 jprocterga tracker option and apply gpl development license tree | commitdiff
2009-06-08 jprocterapply gpl development license tree | commitdiff
2009-06-01 jprocterbetter decoupling of data loading routines for AJAX tree | commitdiff
2009-06-01 jprocterfirst experiment with GA application use tracking tree | commitdiff
2009-04-04 jprocterrejigged jmol check thread to run prior to data loading... tree | commitdiff
2009-04-04 jprocterrejigged jmol check thread to run prior to data loading... tree | commitdiff
2009-03-17 jproctersortbytree/nosortbytree and defprop arguments. (defprop... tree | commitdiff
2009-03-17 jprocternew sortbytree default config property tree | commitdiff
2009-02-06 jproctershowunconserved preference tree | commitdiff
2008-12-04 jprocteradded local das sequence source CLI and documentation tree | commitdiff
2008-12-04 jprocterallow sequence source to be specified as sequence:mydas... tree | commitdiff
2008-12-04 jprocterlocal das source properties string constants and routin... tree | commitdiff
2008-09-08 jprocterview settings in view submenu and user preferences... tree | commitdiff
2008-09-04 jproctermerge from 2_4_Release branch tree | commitdiff
2008-08-12 jprocteradded nojmol parameter to disable check for jmol tree | commitdiff
2008-08-05 jproctershowbutton default is true tree | commitdiff
2008-08-04 jprocteradded 'showbutton' applet parameter tree | commitdiff
2008-07-18 jprocterprevent exception when no default timeout is specified tree | commitdiff
2008-06-30 jproctersafer retrieval of groovy scripts from URLs tree | commitdiff
2008-05-26 jprocterminor bugfix for case when PDB sequence strings are... tree | commitdiff
2008-04-29 jproctercomments and version wget ping timeout fix for when... tree | commitdiff
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