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JAL-1759 corrected syntax for 'atom picked' callback (toggles label
[jalview.git]
/
src
/
jalview
/
bin
/
2011-10-21
jprocter
Merge branch 'Release_2_7_Branch_hotfix_JAL-962' into...
tree
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commitdiff
2011-10-21
jprocter
(JAL-965) new api methods to allow features to be loade...
tree
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commitdiff
2011-10-21
jprocter
(JAL-962) rejig parameter processing order so groups...
tree
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commitdiff
2011-10-11
jprocter
normalised logo rendering (JAL-958)
tree
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commitdiff
2011-10-10
jprocter
update author list in license for (JAL-826)
tree
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commitdiff
2011-09-27
jprocter
use jalview properties preference to enable RSBS editor...
tree
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commitdiff
2011-09-27
jprocter
apply version 2.7 copyright
tree
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commitdiff
2011-09-22
jprocter
jalview rss reader based on jswingreader (JAL-943)
tree
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commitdiff
2011-09-16
jprocter
fix for JAL-895 - new exampleFile_2_7.jar and logic...
tree
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commitdiff
2011-09-16
jprocter
JAL-940 - removed legacy service options from preferenc...
tree
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commitdiff
2011-09-12
jprocter
JAL-927 ensure api method calls that affect GUI state...
tree
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commitdiff
2011-08-17
jprocter
JAL-898 - ensure we only remove a clargs progress bar...
tree
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commitdiff
2011-08-15
jprocter
JAL-904 added scrollToRow and scrollToColumn methods...
tree
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commitdiff
2011-08-05
jprocter
fetch groovy script from URL (JAL-899) and show progres...
tree
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commitdiff
2011-08-03
jprocter
refactored resolvetocodebase code and reused for resour...
tree
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commitdiff
2011-08-03
jprocter
refactored resolvetocodebase code and reused for resour...
tree
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commitdiff
2011-07-28
jprocter
refer to local default setting for proxy when connecting to
tree
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commitdiff
2011-07-28
jprocter
added 'since 2.x notes to parameters'. User configurabl...
tree
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commitdiff
2011-07-25
jprocter
use proper encoding for storing colour as user preferen...
tree
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commitdiff
2011-07-22
jprocter
default parameter for colours in annotation shading...
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commitdiff
2011-07-22
jprocter
method to get a user default colour (JAL-234)
tree
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commitdiff
2011-07-03
jprocter
extracted jalviewlite API calls as separate interface...
tree
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commitdiff
2011-05-17
jprocter
refactor to allow distinct StructureSelectionManager...
tree
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commitdiff
2011-05-05
jprocter
improved javascript callback execution thread and provi...
tree
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commitdiff
2011-04-08
jprocter
imported properties via -props should never be overwritten
tree
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commitdiff
2011-04-08
jprocter
allow groovy scripts to be run when in headless mode...
tree
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commitdiff
2011-04-07
jprocter
allow groovy scripts to be run when in headless mode...
tree
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commitdiff
2011-04-07
jprocter
allow groovy scripts to be run when in headless mode...
tree
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commitdiff
2011-02-14
jprocter
JAL-621 - also renamed list of javascript handlers
tree
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commitdiff
2011-02-04
jprocter
Balascz reported problems - jalview tries to write...
tree
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commitdiff
2011-02-04
jprocter
JAL-761
tree
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commitdiff
2011-01-21
jprocter
extended mouseover message with absolute sequence posit...
tree
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commitdiff
2011-01-18
jprocter
removed securityException caused by accessing class...
tree
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commitdiff
2011-01-18
jprocter
refactored VamsasListener to allow the source of the...
tree
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commitdiff
2011-01-17
jprocter
additional test - koders.com/java/fid4C9593FE80CE8AA811...
tree
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commitdiff
2011-01-17
jprocter
warn user that no JS callbacks will work by default...
tree
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commitdiff
2011-01-17
jprocter
revised default separator string expression to avoid...
tree
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commitdiff
2011-01-12
jprocter
handlers with no specified alignframe broadcast events...
tree
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commitdiff
2011-01-12
jprocter
1.1 compat
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commitdiff
2011-01-12
jprocter
javascript callback for selection, mousover, and functi...
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commitdiff
2011-01-07
jprocter
refactored dropFile allowing known information to be...
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commitdiff
2010-11-14
jprocter
refactored to decouple dependencies due to FileParse...
tree
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commitdiff
2010-11-14
jprocter
refactored protocol check to jalview.io.FileParse
tree
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commitdiff
2010-11-04
jprocter
made ws warning dialog optional, and fixed its wording...
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commitdiff
2010-09-23
jprocter
apply jalview code style
tree
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commitdiff
2010-09-23
jprocter
Jalview 2.6 source licence
tree
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commitdiff
2010-09-07
jprocter
fix for JAL-631
tree
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commitdiff
2010-09-02
jprocter
1.1 compatibility
tree
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commitdiff
2010-08-31
jprocter
notes re JAL-623 and JAL-583, new api methods for addin...
tree
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commitdiff
2010-08-31
jprocter
notes re JAL-629
tree
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commitdiff
2010-08-25
jprocter
excluded methods related to broken Jmol applet binding...
tree
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commitdiff
2010-08-20
jprocter
refactored external structure viewer binding API calls...
tree
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commitdiff
2010-08-06
jprocter
interactive/batch mode test for groovy scripting (See...
tree
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commitdiff
2010-06-29
jprocter
new ajax api methods for linking existing jmol viewers...
tree
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commitdiff
2010-06-18
jprocter
new jmol/pdb relates api calls
tree
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commitdiff
2010-06-12
jprocter
documented the -colour command line argument.
tree
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commitdiff
2010-06-09
jprocter
OSX look and feel JAL-577
tree
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commitdiff
2010-06-08
jprocter
followSelections flag now set via user preferences...
tree
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commitdiff
2010-05-14
jprocter
standard function for bootstrapping discovery threads
tree
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commitdiff
2010-05-14
jprocter
allow initLogger to be called multiple times
tree
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commitdiff
2010-04-30
jprocter
jalview 2.5 release banner
tree
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commitdiff
2010-04-26
jprocter
build date output in the About box, and build details...
tree
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commitdiff
2010-04-23
jprocter
default value boolean parameter getter
tree
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commitdiff
2010-04-14
jprocter
profile visualizations are now logos
tree
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commitdiff
2010-03-30
jprocter
group autoannotation and consensus display settings
tree
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commitdiff
2010-02-10
jprocter
das feature fetch followed by png output fixed (bug...
tree
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commitdiff
2010-02-09
jprocter
groupURL link preference variables
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commitdiff
2009-11-23
jprocter
initialise current and defaultAlignFrame and debug...
tree
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commitdiff
2009-11-13
jprocter
make fileparse errors easier to debug by dumping file...
tree
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commitdiff
2009-11-09
jprocter
more spin on GA prompt
tree
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commitdiff
2009-11-09
jprocter
user friendly GA and privacy statement
tree
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commitdiff
2009-10-13
jprocter
prompt user to enable usage stats
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commitdiff
2009-10-13
jprocter
documented privacy settings, versioncheck controlled...
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commitdiff
2009-07-24
jprocter
explicitly grab all permissions for application executi...
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commitdiff
2009-06-19
jprocter
usepicr config property
tree
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commitdiff
2009-06-12
jprocter
retrieve and init vamsas session from vdoc at URL
tree
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commitdiff
2009-06-10
jprocter
com.boxysystems.jgogleanalytics is now an optional...
tree
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commitdiff
2009-06-08
jprocter
clargs documentation, new vamsas session import and...
tree
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commitdiff
2009-06-08
jprocter
ga tracker option and apply gpl development license
tree
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commitdiff
2009-06-08
jprocter
apply gpl development license
tree
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commitdiff
2009-06-01
jprocter
better decoupling of data loading routines for AJAX
tree
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commitdiff
2009-06-01
jprocter
first experiment with GA application use tracking
tree
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commitdiff
2009-04-04
jprocter
rejigged jmol check thread to run prior to data loading...
tree
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commitdiff
2009-04-04
jprocter
rejigged jmol check thread to run prior to data loading...
tree
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commitdiff
2009-03-17
jprocter
sortbytree/nosortbytree and defprop arguments. (defprop...
tree
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commitdiff
2009-03-17
jprocter
new sortbytree default config property
tree
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commitdiff
2009-02-06
jprocter
showunconserved preference
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commitdiff
2008-12-04
jprocter
added local das sequence source CLI and documentation
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commitdiff
2008-12-04
jprocter
allow sequence source to be specified as sequence:mydas...
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commitdiff
2008-12-04
jprocter
local das source properties string constants and routin...
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commitdiff
2008-09-08
jprocter
view settings in view submenu and user preferences...
tree
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commitdiff
2008-09-04
jprocter
merge from 2_4_Release branch
tree
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commitdiff
2008-08-12
jprocter
added nojmol parameter to disable check for jmol
tree
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commitdiff
2008-08-05
jprocter
showbutton default is true
tree
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commitdiff
2008-08-04
jprocter
added 'showbutton' applet parameter
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commitdiff
2008-07-18
jprocter
prevent exception when no default timeout is specified
tree
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commitdiff
2008-06-30
jprocter
safer retrieval of groovy scripts from URLs
tree
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commitdiff
2008-05-26
jprocter
minor bugfix for case when PDB sequence strings are...
tree
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commitdiff
2008-04-29
jprocter
comments and version wget ping timeout fix for when...
tree
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commitdiff
2008-04-21
jprocter
added centre annotation labels menu entry (and commente...
tree
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commitdiff
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