2023-06-06 |
James Procter | JAL-1551 a bit of javadoc for Jalview.testoutput methods |
tree | commitdiff |
2023-06-05 |
Ben Soares | JAL-4001 untested GA4 client code |
tree | commitdiff |
2023-06-02 |
Ben Soares | Merge branch 'develop' into task/JAL-4001_migrate_googl... |
tree | commitdiff |
2023-06-01 |
Ben Soares | Merge branch 'develop' into improvement/JAL-4193_cl_arg... |
tree | commitdiff |
2023-06-01 |
Ben Soares | Merge branch 'develop' into features/r2_11_2_alphafold... |
tree | commitdiff |
2023-06-01 |
Ben Soares | JAL-629 fixing test EBIAlphaFoldTest.checkImportPAEToSt... |
tree | commitdiff |
2023-06-01 |
Ben Soares | JAL-4001 Changed title+message to MessageManager |
tree | commitdiff |
2023-06-01 |
Ben Soares | JAL-4193 JAL-4194 sessionProperties layer in Cache... |
tree | commitdiff |
2023-06-01 |
James Procter | Merge branch 'develop' into features/JAL-4134_use_annot... |
tree | commitdiff |
2023-05-30 |
Ben Soares | JAL-629 JAL-4121 Added documentation to Help docs and... |
tree | commitdiff |
2023-05-30 |
Ben Soares | JAL-629 Better formatting of Arg.Opt options in usage... |
tree | commitdiff |
2023-05-30 |
Ben Soares | JAL-4121 slight refactoring of method name and added... |
tree | commitdiff |
2023-05-29 |
James Procter | Merge branch 'develop' into features/JAL-4134_use_annot... |
tree | commitdiff |
2023-05-27 |
Ben Soares | JAL-4121 Added a NPE check caught in tests. Added ... |
tree | commitdiff |
2023-05-27 |
Ben Soares | JAL-4121 Store Arg.Opts in bootstrapArgs. Change Opt... |
tree | commitdiff |
2023-05-26 |
Ben Soares | JAL-4125 Fixed non-closing external viewers, also added... |
tree | commitdiff |
2023-05-26 |
James Procter | Merge branch 'develop' into features/JAL-4134_use_annot... |
tree | commitdiff |
2023-05-25 |
Ben Soares | JAL-3416 JAL-3820 FlatLaf default for everyone, includi... |
tree | commitdiff |
2023-05-25 |
Ben Soares | JAL-3820 JAL-3830 improvements to script launching... |
tree | commitdiff |
2023-05-25 |
Ben Soares | JAL-3820 Create and use 'Jalview app' symblinks to... |
tree | commitdiff |
2023-05-24 |
Ben Soares | JAL-3416 slightly improved colours for tabber pane... |
tree | commitdiff |
2023-05-23 |
Ben Soares | JAL-629 Updated help docs and fixed structure image... |
tree | commitdiff |
2023-05-23 |
Ben Soares | JAL-629 Added --structureimage code and formatting... |
tree | commitdiff |
2023-05-22 |
Ben Soares | JAL-629 --structureimage with formatting args. |
tree | commitdiff |
2023-05-22 |
James Procter | JAL-1551 spotless |
tree | commitdiff |
2023-05-21 |
Ben Soares | JAL-629 Clarify sections of arguments with --help-all... |
tree | commitdiff |
2023-05-20 |
Ben Soares | JAL-4187 JAL-629 JAL-3830 small adjustments after furth... |
tree | commitdiff |
2023-05-20 |
Ben Soares | JAL-4187 JAL-629 JAL-3830 adjustments to Cygwin and... |
tree | commitdiff |
2023-05-20 |
Ben Soares | JAL-4160 JAL-3830 Improve jalview.bin.Launcher for... |
tree | commitdiff |
2023-05-20 |
Ben Soares | JAL-4160 JAL-3830 Improve jalview.bin.Launcher for... |
tree | commitdiff |
2023-05-19 |
Ben Soares | JAL-4187 JAL-629 JAL-3830 Fix ArgParser to check for... |
tree | commitdiff |
2023-05-19 |
James Procter | JAL-1551 spotlessApply |
tree | commitdiff |
2023-05-19 |
James Procter | JAL-1551 spotlessApply |
tree | commitdiff |
2023-05-19 |
Ben Soares | JAL-629 Added Arg.Types and additional --help-type... |
tree | commitdiff |
2023-05-18 |
Ben Soares | JAL-629 fixes to typed args |
tree | commitdiff |
2023-05-18 |
Ben Soares | JAL-629 Added 'Type' to args and argvalues |
tree | commitdiff |
2023-05-16 |
Ben Soares | JAL-629 Ensure precedence of named linked ID values... |
tree | commitdiff |
2023-05-15 |
Ben Soares | Revert "JAL-629 Add a --threads argument to allow a... |
tree | commitdiff |
2023-05-15 |
Ben Soares | JAL-629 Add a --threads argument to allow a limited... |
tree | commitdiff |
2023-05-14 |
Ben Soares | JAL-629 add an {extension} substitution |
tree | commitdiff |
2023-05-13 |
Ben Soares | JAL-629 launcher shell script uses jalview.bin.Launcher... |
tree | commitdiff |
2023-05-12 |
Ben Soares | JAL-629 Added --opened arg which is like limiting ... |
tree | commitdiff |
2023-05-11 |
Ben Soares | JAL-629 Add some shortnames to args. Add Opt.OUTPUT... |
tree | commitdiff |
2023-05-11 |
Ben Soares | JAL-629 Fix --tempfac. Hide non-working --notempfac... |
tree | commitdiff |
2023-05-11 |
Ben Soares | JAL-629 Added linkedId to ArgValuesMap for reference... |
tree | commitdiff |
2023-05-10 |
Ben Soares | JAL-629 Check Arg options for obtaining boolean or... |
tree | commitdiff |
2023-05-10 |
Ben Soares | JAL-629 Catch a NPE, fix a test |
tree | commitdiff |
2023-05-10 |
Ben Soares | JAL-629 More docs. Usage statement. Adjust some logging... |
tree | commitdiff |
2023-05-09 |
Ben Soares | JAL-629 Add --seqid for non-subval use, make arg value... |
tree | commitdiff |
2023-05-09 |
Ben Soares | JAL-629 change --renderer to --textrenderer to be more... |
tree | commitdiff |
2023-05-04 |
Ben Soares | JAL-629 More NG arguments: --features, --annotations... |
tree | commitdiff |
2023-05-03 |
Ben Soares | JAL-629 added eps and imagemap. Added --output and... |
tree | commitdiff |
2023-05-02 |
Ben Soares | JAL-629 Changed --newframe and --allframes to --new... |
tree | commitdiff |
2023-05-02 |
Ben Soares | JAL-629 Add --renderer arg/subval for vector output... |
tree | commitdiff |
2023-04-30 |
Ben Soares | JAL-629 Change behaviour of --open GLOB to increment... |
tree | commitdiff |
2023-04-29 |
Ben Soares | JAL-629 Added --all arg, [*] linkedId and functionality... |
tree | commitdiff |
2023-04-28 |
Ben Soares | JAL-629 Change colour scheme shortnames to something... |
tree | commitdiff |
2023-04-27 |
Ben Soares | JAL-629 Fixed appending URLs |
tree | commitdiff |
2023-04-27 |
Ben Soares | JAL-629 Changed --increment to --newframe to make sense... |
tree | commitdiff |
2023-04-27 |
Ben Soares | JAL-629 allow opening URL as only argument(s) |
tree | commitdiff |
2023-04-26 |
Ben Soares | JAL-629 JAL-4167 Added args to tests. Fixed potential... |
tree | commitdiff |
2023-04-24 |
Ben Soares | JAL-629 Add --nowebdiscovery. Distinguish arg=="open... |
tree | commitdiff |
2023-04-23 |
Ben Soares | JAL-629 Change --open to --append and --opennew to... |
tree | commitdiff |
2023-04-22 |
Ben Soares | JAL-629 Test and fix --annotation --ssannotation args... |
tree | commitdiff |
2023-04-19 |
Ben Soares | JAL-629 Now showing temp fac and secondary structure... |
tree | commitdiff |
2023-04-14 |
Ben Soares | JAL-629 Adding PAE and TFType at structure loading... |
tree | commitdiff |
2023-04-12 |
Ben Soares | JAL-629 Fix non-multi string bootstrap arg bug. |
tree | commitdiff |
2023-04-12 |
Ben Soares | JAL-629 parse SubVals once with ArgValue. Ensure SubVal... |
tree | commitdiff |
2023-04-12 |
Ben Soares | JAL-629 allow argfiles in argfiles, but avoid looping... |
tree | commitdiff |
2023-04-12 |
Ben Soares | JAL-629 allow comments in argfiles '#' |
tree | commitdiff |
2023-04-05 |
Ben Soares | JAL-629 Tests for FileUtils. Tidying counter substituti... |
tree | commitdiff |
2023-04-04 |
Ben Soares | JAL-629 more info in usage statement |
tree | commitdiff |
2023-04-04 |
Ben Soares | JAL-629 Start of Usage statement |
tree | commitdiff |
2023-04-04 |
Ben Soares | JAL-629 More consistent printing of --arguments. Exampl... |
tree | commitdiff |
2023-04-04 |
Ben Soares | JAL-629 Remove debugging comment |
tree | commitdiff |
2023-04-04 |
Ben Soares | JAL-629 --initsubstitutions as a bootstrap arg, new... |
tree | commitdiff |
2023-04-03 |
Ben Soares | JAL-629 sort files from java glob for predictability... |
tree | commitdiff |
2023-04-03 |
Ben Soares | JAL-629 added setprop. More filename based substitution... |
tree | commitdiff |
2023-03-30 |
Ben Soares | JAL-629 fix bug for opening single named file with... |
tree | commitdiff |
2023-03-30 |
Ben Soares | JAL-629 Don't use new ArgParser if there are no --args... |
tree | commitdiff |
2023-03-30 |
Ben Soares | JAL-629 fix SubVals npe |
tree | commitdiff |
2023-03-29 |
Ben Soares | JAL-629 Added --opennew --nonews --nosplash. Added... |
tree | commitdiff |
2023-03-28 |
Ben Soares | JAL-629 Opening files in new windows. not working yet |
tree | commitdiff |
2023-03-25 |
Ben Soares | JAL-629 open initial non-Arg arguments as files in... |
tree | commitdiff |
2023-03-25 |
Ben Soares | JAL-629 improvements to argparser toString. Improvement... |
tree | commitdiff |
2023-03-24 |
Ben Soares | JAL-629 Test tidyup |
tree | commitdiff |
2023-03-23 |
Ben Soares | JAL-629 refactor ArgParser and helper classes all to... |
tree | commitdiff |
2023-03-18 |
Ben Soares | JAL-629 Check for new commandsSuccess before quit |
tree | commitdiff |
2023-03-18 |
Ben Soares | JAL-629 move getdown update to earlier stage |
tree | commitdiff |
2023-03-17 |
Ben Soares | JAL-629 All applications System.exits going through... |
tree | commitdiff |
2023-03-16 |
Ben Soares | JAL-629 revert metal laf |
tree | commitdiff |
2023-03-16 |
Ben Soares | JAL-629 Set Metal as default LAF for build server tests |
tree | commitdiff |
2023-03-15 |
Ben Soares | JAL-629 Commands more objecty, less classy. FileLoader... |
tree | commitdiff |
2023-03-12 |
Ben Soares | JAL-629 Allow substitutions of {} = defaultCounter... |
tree | commitdiff |
2023-03-11 |
Ben Soares | JAL-629 --substitutions --nosubstitutions flags, -... |
tree | commitdiff |
2023-03-11 |
Ben Soares | JAL-629 Auto and Default count incrementer args. Flags... |
tree | commitdiff |
2023-03-10 |
Ben Soares | JAL-629 start of tests and more examples |
tree | commitdiff |
2023-03-09 |
Ben Soares | JAL-629 start of tests |
tree | commitdiff |
2023-03-09 |
Ben Soares | JAL-629 --argfile=glob implemented. Remove reference... |
tree | commitdiff |
2023-03-08 |
Ben Soares | JAL-629 --close individually for each AlignFrame opened... |
tree | commitdiff |
next |