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JAL-629 Change behaviour of --open GLOB to increment defaultLinkedId to allow --allfr...
[jalview.git] / src / jalview / bin /
2020-07-07 Ben SoaresJAL-3608 Changes from code review CR-JAL-236 tree | commitdiff
2020-07-07 Ben SoaresJAL-3608 ex stacktraces now go to Cache.log.debug tree | commitdiff
2020-07-07 Ben SoaresJAL-3628 System.out/err -> Cache.log.info/error tree | commitdiff
2020-07-07 Ben SoaresMerge branch 'bug/JAL-3628_Unable_to_save_update_to_exi... tree | commitdiff
2020-07-07 Ben SoaresJAL-3628 System.out/err -> Cache.log.info/error tree | commitdiff
2020-07-07 Ben SoaresJAL-3628 Fixed oddly worded and non-formatted error... tree | commitdiff
2020-07-01 Ben SoaresMerge branch 'task/JAL-3608_property_set_laf_and_tests_... tree | commitdiff
2020-06-26 Jim ProcterJAL-3671 hardwire log4j.root logger to INFO to supress... tree | commitdiff
2020-06-21 Ben SoaresJAL-3609 Report when scale setting used. tree | commitdiff
2020-06-21 Ben SoaresJAL-3609 New auto-scale 'formula' for linux HiDPI.... tree | commitdiff
2020-06-16 Ben SoaresJAL-3608 non-JS cherry-pick tree | commitdiff
2020-06-16 Jim ProcterMerge branch 'bug/JAL-3561_translatefileformats' into... patch/JAL-3561_JAL-3660_fileformatexport_CLI tree | commitdiff
2020-06-16 Jim ProcterJAL-3660 JAL-3561 output alignment as requested file... bug/JAL-3561_translatefileformats tree | commitdiff
2020-06-16 Ben SoaresJAL-3608 formatting save only tree | commitdiff
2020-06-16 Ben SoaresJAL-3608 formatting save only tree | commitdiff
2020-05-22 soaresJAL-3609 corrected maxdimension to mindimension. Adjust... tree | commitdiff
2020-05-20 Ben SoaresJAL-3609 removed debugging prints tree | commitdiff
2020-05-19 Ben SoaresJAL-3609 changed property names to something more palat... tree | commitdiff
2020-05-19 Ben SoaresJAL-3609 system properties to force a scale, or automat... tree | commitdiff
2020-05-19 Ben SoaresJAL-3609 Added a -DforceHiDPISetting=true option mainly... tree | commitdiff
2020-05-18 gmungocMerge branch 'Jalview-JS/develop' into develop tree | commitdiff
2020-05-15 Ben SoaresJAL-3609 HiDPI scale setting done via system prop in... tree | commitdiff
2020-05-04 Ben SoaresJAL-3608 streamlined LaF methods and allow specificying... tree | commitdiff
2020-05-03 Ben SoaresJAL-3608 also look at user pref PREFERRED_LAF tree | commitdiff
2020-05-01 Ben SoaresJAL-3608 Now reporting the actual LookAndFeel in Java... tree | commitdiff
2020-05-01 Ben SoaresJAL-3608 Added java builtin NimbusLookAndFeel option... tree | commitdiff
2020-04-30 Ben SoaresJAL-3608 Enforcing MetalLookAndFeel as default on linux... tree | commitdiff
2020-04-30 Ben SoaresJAL-3608 Added 'metal' option for laf property tree | commitdiff
2020-04-23 soaresJAL-3608 JAL-3416 Added a 'gtk' option. Not currently... tree | commitdiff
2020-04-22 soaresJAL-3608 saved in Eclipse with auto formatting tree | commitdiff
2020-04-22 Ben SoaresJAL-3608 Added CrossPlatform LaF and made configurable... tree | commitdiff
2020-04-21 Jim ProcterJAL-3407 add GPL license to Jalview source files tree | commitdiff
2020-03-30 gmungocMerge branch 'develop' into Jalview-JS/develop tree | commitdiff
2020-02-27 Ben SoaresJAL-3543 remove debugging output improvement/JAL-3543_dont_report_null_versions_in_java_console tree | commitdiff
2020-02-27 Ben SoaresMerge branch 'develop' into improvement/JAL-3543_dont_r... tree | commitdiff
2020-02-27 Ben SoaresJAL-3543 Conditional reporting of Install4j and Getdown... tree | commitdiff
2020-02-26 Jim ProcterMerge branch 'bug/JAL-3477_memory_max_allocation' into... tree | commitdiff
2020-01-10 Ben SoaresJAL-3477 Javadoc, addition of -jvmmempc and -jvmmemmax... tree | commitdiff
2020-01-09 Ben SoaresJAL-3477 Refactoring based on CR-JAL-189 tree | commitdiff
2020-01-09 Ben SoaresJAL-3477 Javadoc, refactoring and slight changes to... tree | commitdiff
2019-12-06 Ben SoaresJAL-3449 Added more versions to getdown splashscreen... tree | commitdiff
2019-11-22 Ben SoaresJAL-3449 install4j version, install4j template version... tree | commitdiff
2019-11-20 Ben SoaresJAL-3477 A bit of refactoring for the better tree | commitdiff
2019-11-19 Ben SoaresJAL-3210 removing overly complicated logging. Settling... tree | commitdiff
2019-11-18 Ben SoaresJAL-3477 New jvmmemmax config option in getdown and... tree | commitdiff
2019-11-18 Ben SoaresJAL-3477 New sensible default decisions on memory,... tree | commitdiff
2019-11-12 gmungocJAL-3274 resource path correction, code tidying (consta... tree | commitdiff
2019-11-05 gmungocJAL-3210 JAL-3130 skip Taskbar in JalviewJS tree | commitdiff
2019-11-05 gmungocJAL-3210 JAL-3330 use SequenceOntologyLite in JalviewJS tree | commitdiff
2019-07-16 gmungocJAL-3210 Merge branch 'develop' into trialMerge tree | commitdiff
2019-07-02 Jim ProcterMerge branch 'develop' into tasks/JAL-3311_removeVamsasMenu tree | commitdiff
2019-06-26 Jim ProcterJAL-3334 fix - always load full SO to resolve the seque... tree | commitdiff
2019-06-26 Jim ProcterJAL-3111 get rid of nasty tab characters tree | commitdiff
2019-06-19 Ben SoaresJAL-3321 Last pieces of the getdown-launcher.jar upgrad... tree | commitdiff
2019-06-17 Ben SoaresJAL-3310 JAL-3300 two getdown fixes merged tree | commitdiff
2019-06-17 Jim ProcterJAL-3311 remove menus and documentation relating to... tasks/JAL-3311_removeVamsasMenu tree | commitdiff
2019-06-14 Ben SoaresJAL-3278 A system.out.println turned into a cache.log... tree | commitdiff
2019-06-14 Jim ProcterJAL-3111 report build type and commit in stdout from... tree | commitdiff
2019-06-14 Jim ProcterJAL-3299 JAL-3280 javadoc on BuildDetails bean tree | commitdiff
2019-05-22 Jim ProcterJAL-3274 import build properties and authors resources... Jalview-JS/tasks/JAL-3274-build_details tree | commitdiff
2019-05-21 Ben SoaresJAL-3247 Launcher start improvements. RPM and DEB no... tree | commitdiff
2019-05-20 Ben SoaresJAL-3254 Improved memory setting (allows mem for OS... tree | commitdiff
2019-04-26 Ben SoaresJAL-3233 Added isAMac check for -Xdock:icon addition... tree | commitdiff
2019-04-25 Ben SoaresJAL-3224 JAL-3225 Some fixes in install4j template... tree | commitdiff
2019-04-25 Ben SoaresJAL-3224 JAL-3225 Added lines to check for updates... tree | commitdiff
2019-04-24 Jim ProcterMerge branch 'task/JAL-3225_Integration_Gradle_building... tree | commitdiff
2019-04-15 Ben SoaresJAL-3130 Helper classes to take Class Exceptions when... tree | commitdiff
2019-04-05 hansonrfixes for Jalview command-line URI code tree | commitdiff
2019-04-03 hansonrreplacing @j2sNative with @j2sIgnore where appropriate... tree | commitdiff
2019-04-03 hansonrj2sNative clean-up. Fixes problem with second try of... tree | commitdiff
2019-04-01 Ben SoaresJAL-3130 JAL-3007 Added gradle build for Java 11 and... tree | commitdiff
2019-03-31 hansonrCache JS adds search of Info for jalview_xxx properties tree | commitdiff
2019-03-27 gmungocJAL-3032 small formatting and isJS() tidy tree | commitdiff
2019-03-27 hansonrreinstating test data for JalviewJS tree | commitdiff
2019-03-27 hansonrcomment out of @j2sNative block tree | commitdiff
2019-03-27 hansonrconsolidation of Platform isJS calls tree | commitdiff
2019-03-27 hansonrisJS cleanup tree | commitdiff
2019-03-20 Ben SoaresJAL-3130 Lots of deprecation fixes. See utils/deprecat... tree | commitdiff
2019-03-13 gmungocMerge branch 'develop' into trialMerge tree | commitdiff
2019-03-11 gmungocMerge branch 'feature/JAL-3127_seqidChainshading' into... tree | commitdiff
2019-03-06 gmungocMerge branch 'tasks/JAL-3035_remove_dasobert_dependency... tree | commitdiff
2019-03-06 gmungocJAL-3035 more das bits removed tree | commitdiff
2019-03-06 Jim ProcterJAL-3208 re-enable the setprop CLI arg, but only in... tree | commitdiff
2019-03-04 gmungocMerge remote-tracking branch 'origin/tasks/JAL-3035_rem... tree | commitdiff
2019-02-28 gmungocJAL-3032 any url parameter not "j2s..." taken as Jalvie... Jalview-BH/JAL-3026-JAL-3063-JAXB tree | commitdiff
2019-02-25 gmungocJAL-3032 Jalview (as JS) parse query params to main... tree | commitdiff
2019-02-25 gmungocJAL-3032 JalviewJS2 converts url query parameters to... tree | commitdiff
2019-01-26 hansonrJalview.isJS() --> Platform.isJS(), DBRefEntry[] -... tree | commitdiff
2019-01-21 hansonrisAMac() -> isAMacAndNotJS(), isWindows() -> isWindowsA... tree | commitdiff
2019-01-18 hansonrcanvas line/font/pixel fixes; menu accelerators; tree | commitdiff
2019-01-11 hansonr(commented out but potentially useful) methods to tap... tree | commitdiff
2018-12-01 hansonradding jaxbtest.jvx and directing JalviewJS2.java to... tree | commitdiff
2018-11-11 hansonradds static declaration of AJAX-readable domains tree | commitdiff
2018-10-19 Ben SoaresJAL-3141 Backup files being created with default suffix... tree | commitdiff
2018-10-17 Jim ProcterMerge branch 'feature/JAL-3063JAXB' into Jalview-BH... tree | commitdiff
2018-10-09 Jim ProcterJAL-3127 pass reference to AlignViewportI when creating... tree | commitdiff
2018-09-18 Jim ProcterJAL-3035 more dedasification tree | commitdiff
2018-09-11 Jim ProcterMerge branch 'develop' into releases/Release_2_11_Branch tree | commitdiff
2018-09-05 Jim ProcterJAL-3065 - amended commit 4906697ab6e5a79fbce3baae89f7... bug/JAL-3065_DH_keyPair_Exception_nogroovysettings tree | commitdiff
2018-08-21 hansonrmc_view references were MCview tree | commitdiff
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