JAL-3628 Fixed oddly worded and non-formatted error popups when saving fails

diff --git a/resources/lang/Messages.properties b/resources/lang/Messages.properties
index 96cc7d9..df7f76a 100644 (file)
--- a/resources/lang/Messages.properties
+++ b/resources/lang/Messages.properties
@@ -377,7 +377,7 @@ label.example = Example
 label.example_param = Example: {0}
 label.select_file_format_before_saving = You must select a file format before saving!
 label.file_format_not_specified = File format not specified
-label.couldnt_save_file = Couldn't save file: {0}
+label.couldnt_save_file = Couldn''t save file: {0}
 label.error_saving_file = Error Saving File
 label.remove_from_default_list = Remove from default list?
 label.remove_user_defined_colour = Remove user defined colour
@@ -1346,6 +1346,7 @@ label.backupfiles_confirm_save_file = Confirm save file
 label.backupfiles_confirm_save_file_backupfiles_roll_wrong = Something possibly went wrong with the backups of this file.
 label.backupfiles_confirm_save_new_saved_file_ok = The new saved file seems okay.
 label.backupfiles_confirm_save_new_saved_file_not_ok = The new saved file might not be okay.
+label.continue_operation = Continue operation?
 label.backups = Backups
 label.backup = Backup
 label.backup_files = Backup Files

diff --git a/resources/lang/Messages_es.properties b/resources/lang/Messages_es.properties
index dfb8dd6..707f1ba 100644 (file)
--- a/resources/lang/Messages_es.properties
+++ b/resources/lang/Messages_es.properties
@@ -1341,6 +1341,7 @@ label.backupfiles_confirm_save_file = Confirmar guardar archivo
 label.backupfiles_confirm_save_file_backupfiles_roll_wrong = Posiblemente algo está mal con los archivos de respaldos.
 label.backupfiles_confirm_save_new_saved_file_ok = El nuevo archivo guardado parece estar bien.
 label.backupfiles_confirm_save_new_saved_file_not_ok = El nuevo archivo guardado podría no estar bien.
+label.continue_operation = ¿Continuar operación?
 label.backups = Respaldos
 label.backup = Respaldo
 label.backup_files = Archivos de respaldos

diff --git a/src/jalview/bin/Cache.java b/src/jalview/bin/Cache.java
index 35d6aa3..bb3ea76 100755 (executable)
--- a/src/jalview/bin/Cache.java
+++ b/src/jalview/bin/Cache.java
@@ -20,16 +20,6 @@
  */
 package jalview.bin;
 
-import jalview.datamodel.PDBEntry;
-import jalview.gui.UserDefinedColours;
-import jalview.schemes.ColourSchemeLoader;
-import jalview.schemes.ColourSchemes;
-import jalview.schemes.UserColourScheme;
-import jalview.structure.StructureImportSettings;
-import jalview.urls.IdOrgSettings;
-import jalview.util.ColorUtils;
-import jalview.ws.sifts.SiftsSettings;
-
 import java.awt.Color;
 import java.io.BufferedReader;
 import java.io.File;
@@ -37,6 +27,8 @@ import java.io.FileInputStream;
 import java.io.FileOutputStream;
 import java.io.InputStream;
 import java.io.InputStreamReader;
+import java.io.PrintWriter;
+import java.io.StringWriter;
 import java.text.DateFormat;
 import java.text.SimpleDateFormat;
 import java.util.Collections;
@@ -52,6 +44,16 @@ import org.apache.log4j.Level;
 import org.apache.log4j.Logger;
 import org.apache.log4j.SimpleLayout;
 
+import jalview.datamodel.PDBEntry;
+import jalview.gui.UserDefinedColours;
+import jalview.schemes.ColourSchemeLoader;
+import jalview.schemes.ColourSchemes;
+import jalview.schemes.UserColourScheme;
+import jalview.structure.StructureImportSettings;
+import jalview.urls.IdOrgSettings;
+import jalview.util.ColorUtils;
+import jalview.ws.sifts.SiftsSettings;
+
 /**
  * Stores and retrieves Jalview Application Properties Lists and fields within
  * list entries are separated by '|' symbols unless otherwise stated (|) clauses
@@ -435,8 +437,8 @@ public class Cache
 
     String jnlpVersion = System.getProperty("jalview.version");
 
-    // jnlpVersion will be null if a latest version check for the channel needs to
-    // be done
+    // jnlpVersion will be null if a latest version check for the channel needs
+    // to be done
     // Dont do this check if running in headless mode
 
     if (jnlpVersion == null && getDefault("VERSION_CHECK", true)
@@ -555,8 +557,8 @@ public class Cache
     new BuildDetails(codeVersion, null, codeInstallation);
     if (printV && reportVersion)
     {
-      System.out
-            .println("Jalview Version: " + codeVersion + codeInstallation);
+      System.out.println(
+              "Jalview Version: " + codeVersion + codeInstallation);
     }
   }
 
@@ -1099,16 +1101,20 @@ public class Cache
   public static String getVersionDetailsForConsole()
   {
     StringBuilder sb = new StringBuilder();
-    sb.append("Jalview Version: " + jalview.bin.Cache.getDefault("VERSION", "TEST"));
+    sb.append("Jalview Version: "
+            + jalview.bin.Cache.getDefault("VERSION", "TEST"));
     sb.append("\n");
     sb.append("Jalview Installation: "
             + jalview.bin.Cache.getDefault("INSTALLATION", "unknown"));
     sb.append("\n");
-    sb.append("Build Date: " + jalview.bin.Cache.getDefault("BUILD_DATE", "unknown"));
+    sb.append("Build Date: "
+            + jalview.bin.Cache.getDefault("BUILD_DATE", "unknown"));
     sb.append("\n");
     sb.append("Java version: " + System.getProperty("java.version"));
     sb.append("\n");
-    sb.append(System.getProperty("os.arch") + " " + System.getProperty("os.name") + " " + System.getProperty("os.version"));
+    sb.append(System.getProperty("os.arch") + " "
+            + System.getProperty("os.name") + " "
+            + System.getProperty("os.version"));
     sb.append("\n");
     appendIfNotNull(sb, "Install4j version: ",
             System.getProperty("sys.install4jVersion"), "\n", null);
@@ -1116,7 +1122,9 @@ public class Cache
             System.getProperty("installer_template_version"), "\n", null);
     appendIfNotNull(sb, "Launcher version: ",
             System.getProperty("launcher_version"), "\n", null);
-    if (jalview.bin.Cache.getDefault("VERSION", "TEST").equals("DEVELOPMENT")) {
+    if (jalview.bin.Cache.getDefault("VERSION", "TEST")
+            .equals("DEVELOPMENT"))
+    {
       appendIfNotNull(sb, "Getdown appdir: ",
               System.getProperty("getdownappdir"), "\n", null);
       appendIfNotNull(sb, "Java home: ", System.getProperty("java.home"),
@@ -1135,4 +1143,12 @@ public class Cache
     // eg 'built from Source' or update channel
     return jalview.bin.Cache.getDefault("INSTALLATION", "unknown");
   }
+
+  public static String getStackTraceString(Throwable t)
+  {
+    StringWriter sw = new StringWriter();
+    PrintWriter pw = new PrintWriter(sw);
+    t.printStackTrace(pw);
+    return sw.toString();
+  }
 }

diff --git a/src/jalview/gui/AlignFrame.java b/src/jalview/gui/AlignFrame.java
index 79c67ac..99580ae 100644 (file)
--- a/src/jalview/gui/AlignFrame.java
+++ b/src/jalview/gui/AlignFrame.java
@@ -1170,7 +1170,7 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
 
       statusBar.setText(MessageManager.formatMessage(
               "label.successfully_saved_to_file_in_format", new Object[]
-              { fileName, format }));
+              { file, format }));
 
     }
     else
@@ -1204,12 +1204,13 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
 
         try
         {
-          Cache.log.debug("ALIGNFRAME setting PrintWriter");
-          PrintWriter out = new PrintWriter(
-                  new FileWriter(backupfiles.getTempFilePath()));
+          String tempFilePath = backupfiles.getTempFilePath();
+          Cache.log.debug(
+                  "ALIGNFRAME setting PrintWriter to " + tempFilePath);
+          PrintWriter out = new PrintWriter(new FileWriter(tempFilePath));
 
-          Cache.log.debug("ALIGNFRAME about to write to temp file "
-                  + backupfiles.getTempFilePath());
+          Cache.log.debug(
+                  "ALIGNFRAME about to write to temp file " + tempFilePath);
 
           out.print(output);
           Cache.log.debug("ALIGNFRAME about to close file");
@@ -1218,14 +1219,14 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
           this.setTitle(file);
           statusBar.setText(MessageManager.formatMessage(
                   "label.successfully_saved_to_file_in_format", new Object[]
-                  { fileName, format.getName() }));
+                  { file, format.getName() }));
         } catch (IOException e)
         {
           success = false;
           Cache.log.error(
                   "ALIGNFRAME Something happened writing the temp file");
           Cache.log.error(e.getMessage());
-          Cache.log.debug(e.getStackTrace());
+          Cache.log.debug(Cache.getStackTraceString(e));
 
         } catch (Exception ex)
         {
@@ -1233,7 +1234,7 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
           Cache.log.error(
                   "ALIGNFRAME Something else happened writing the temp file");
           Cache.log.error(ex.getMessage());
-          Cache.log.debug(ex.getStackTrace());
+          Cache.log.debug(Cache.getStackTraceString(ex));
         }
 
         backupfiles.setWriteSuccess(success);
@@ -1254,7 +1255,7 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
       {
         JvOptionPane.showInternalMessageDialog(this, MessageManager
                 .formatMessage("label.couldnt_save_file", new Object[]
-                { fileName }),
+                { file }),
                 MessageManager.getString("label.error_saving_file"),
                 JvOptionPane.WARNING_MESSAGE);
       }

diff --git a/src/jalview/io/BackupFiles.java b/src/jalview/io/BackupFiles.java
index c41bd36..e943b23 100644 (file)
--- a/src/jalview/io/BackupFiles.java
+++ b/src/jalview/io/BackupFiles.java
@@ -152,11 +152,11 @@ public class BackupFiles
       Cache.log
               .error("Could not create temp file to save to (IOException)");
       Cache.log.error(e.getMessage());
-      Cache.log.debug(e.getStackTrace());
+      Cache.log.debug(Cache.getStackTraceString(e));
     } catch (Exception e)
     {
       Cache.log.error("Exception ctreating temp file for saving");
-      Cache.log.debug(e.getStackTrace());
+      Cache.log.debug(Cache.getStackTraceString(e));
     }
     this.setTempFile(temp);
   }
@@ -218,7 +218,7 @@ public class BackupFiles
       Cache.log.error(
               "IOException when getting Canonical Path of temp file '"
                       + this.getTempFile().getName() + "'");
-      Cache.log.debug(e.getStackTrace());
+      Cache.log.debug(Cache.getStackTraceString(e));
     }
     return path;
   }
@@ -276,7 +276,7 @@ public class BackupFiles
       Cache.log.error(
               "Could not get canonical path for file '" + file + "'");
       Cache.log.error(e.getMessage());
-      Cache.log.debug(e.getStackTrace());
+      Cache.log.debug(Cache.getStackTraceString(e));
       return false;
     }
     String filename = file.getName();
@@ -416,7 +416,7 @@ public class BackupFiles
               Cache.log.error(
                       "Error occurred, probably making new temp file for '"
                               + fileToBeDeleted.getName() + "'");
-              Cache.log.error(e.getStackTrace());
+              Cache.log.error(Cache.getStackTraceString(e));
             }
 
             // reset
@@ -776,7 +776,6 @@ public class BackupFiles
     boolean okay = roll && rename;
     if (!okay)
     {
-      boolean yesno = false;
       StringBuilder messageSB = new StringBuilder();
       messageSB.append(MessageManager.getString(
               "label.backupfiles_confirm_save_file_backupfiles_roll_wrong"));
@@ -801,6 +800,12 @@ public class BackupFiles
                 "label.backupfiles_confirm_save_new_saved_file_not_ok"));
         // "The new saved file might not be okay."
       }
+      if (messageSB.length() > 0)
+      {
+        messageSB.append("\n");
+      }
+      messageSB
+              .append(MessageManager.getString("label.continue_operation"));
 
       int confirmButton = Platform.isHeadless() ? JvOptionPane.OK_OPTION
               : JvOptionPane.showConfirmDialog(Desktop.desktop,
@@ -908,12 +913,12 @@ public class BackupFiles
       Cache.log.warn("Could not move file '" + oldPath.toString() + "' to '"
               + newPath.toString() + "'");
       Cache.log.error(e.getMessage());
-      Cache.log.debug(e.getStackTrace());
+      Cache.log.debug(Cache.getStackTraceString(e));
       ret = false;
     } catch (Exception e)
     {
       Cache.log.error(e.getMessage());
-      Cache.log.debug(e.getStackTrace());
+      Cache.log.debug(Cache.getStackTraceString(e));
       ret = false;
     }
     return ret;