Merge branch 'JAL-3878_ws-overhaul-3' into with_ws_overhaul-3
[jalview.git] / src / jalview / datamodel / HiddenColumns.java
2022-03-08 Jim ProcterJAL-3438 spotless for 2.11.2.0
2018-11-28 gmungocJAL-3164 redraw complement overview on hide columns bug/JAL-3164complementOverview
2018-02-05 kiramtJAL-2759 Fix errant RangeElementsIterator (unit tests...
2018-02-05 kiramtJAL-2759 Rename getBoundedStartIterator
2018-02-05 kiramtJAL-2759 Changes to StartRegionIterator after review
2018-02-01 kiramtJAL-2759 use right iterator for getVisibleColsIterator
2018-01-31 kiramtJAL-2759 Rationalise VisibleColsIterator and HiddenCols...
2018-01-31 kiramtJAL-2759 Generalised HiddenColsIterator naming
2018-01-31 kiramtJAL-2759 minor refactor to hiding bitsets
2018-01-30 kiramtJAL-2759 Add missing hiddenColumns empty check
2018-01-30 kiramtJAL-2759 updateForDeletedRegion no longer needed
2018-01-30 kiramtJAL-2759 Rationalising hidden cols cursor, and sorting...
2018-01-30 kiramtJAL-2759 comment
2018-01-30 kiramtJAL-2759 Additional tests and tweaks to numColumns...
2018-01-30 kiramtJAL-2759 Keep numColumns up to date
2018-01-29 kiramtJAL-2759 Combine findRegionForColumn code in HiddenColu...
2018-01-29 kiramtJAL-2759 numColumns reset
2018-01-29 kiramtJAL-2759 remove redundant hiddenColumns.clear()
2018-01-29 kiramtJAL-2759 make a new cursor instead of resetting, update...
2018-01-22 kiramtJAL-2579 Moved locateVisibleStartOfSequence to Sequence...
2018-01-22 kiramtJAL-2759 Various minor HiddenColumns updates after...
2018-01-19 kiramtJAL-2759 Changes to getVisibleSequenceStrings after...
2018-01-19 kiramtJAL-2759 Moved propagateInsertions out of HiddenColumns
2018-01-19 kiramtJAL-2759 Update to getVisibleStartAndEndIndex after...
2018-01-18 kiramtJAL-2759 change subtractVisibleColumns and removal...
2018-01-18 kiramtJAL-2759 Updated test
2018-01-18 kiramtJAL-2759 unit tests (incomplete)
2018-01-16 kiramtJAL-2759 setup hideBitSet over range for hideInsertions
2018-01-16 kiramtJAL-2759 Moved alignment annotation code out of HiddenC...
2018-01-16 kiramtJAL-2759 Replaced StringBuffer with StringBuilder;...
2018-01-15 kiramtJAL-2759 More compact iterator usage; after review
2018-01-15 kiramtJAL-2759 First pass instantiate hiddenColumns collectio...
2018-01-15 kiramtJAL-2759 getVisContigsIterator returns VisibleContigsIt...
2018-01-15 kiramtJAL-2759 Rename hideInsertionsFor to hideList, after...
2018-01-15 kiramtJAL-2759 Refactor of hideInsertionsFor after review
2018-01-15 kiramtJAL-2759 Simplified HiddenColumns constructor after...
2018-01-15 kiramtJAL-2759 Minor doc and naming changes
2018-01-15 kiramtJAL-2759 Updated absoluteToVisibleColumn doc (prev...
2018-01-15 kiramtJAL-2759 Rename findColumnPosition and adjustForHiddenC...
2018-01-15 kiramtJAL-2759 Renamed BoundedHiddenColsIterator to HiddenCol...
2018-01-15 kiramtJAL-2759 Comments and renaming for has(Many)HiddenColum...
2018-01-15 kiramtJAL-2759 Tidy up javadoc and naming in HiddenColumnsCur...
2018-01-15 kiramtJAL-2759 Update to getHiddenBoundaryRight + unit test...
2017-11-22 kiramtJAL-2759 performance improvements to hideColumns
2017-11-22 kiramtJAL-2759 performance tweaks
2017-11-22 kiramtJAL-2759 HiddenColumns test polishing
2017-11-21 kiramtJAL-2759 corrected old getVisibleBlocksIterator calls...
2017-11-21 kiramtJAL-2759 Remove getVisibleBlocksIterator call
2017-11-20 kiramtJAL-2759 cursor option for BoundedStartRegionIterator
2017-11-20 kiramtJAL-2759 rationalise visible contigs iteration
2017-11-20 kiramtJAL-2759 improvements to speed up synchronisation;...
2017-11-17 kiramtJAL-2759 Move isVisible to use cursor
2017-11-17 kiramtJAL-2759 tidy
2017-11-17 kiramtJAL-2759 Update tests
2017-11-17 kiramtJAL-2759 Convert reveal to use cursor
2017-11-17 kiramtJAL-2759 HiddenColumnsCursor tests
2017-11-13 kiramtJAL-2759 convert findColumnPosition to use cursor
2017-11-13 kiramtJAL-2759 Converted getHiddenBoundaryLeft/Right to use...
2017-11-09 kiramtJAL-2759 make bounds correct for left scrolling with...
2017-11-06 kiramtJAL-2759 fix getHiddenOffset iterating backwards
2017-10-13 kiramtJAL-2759 hiddenColumns null check
2017-10-10 kiramtJAL-2759 Rearranged iterators
2017-10-09 kiramtJAL-2674 iterator updates
2017-10-06 kiramtJAL-2674 Last moves to iterators
2017-10-06 kiramtJAL-2647 stashing
2017-10-05 kiramtJAL-2674 Removed a stray Vector
2017-10-05 kiramtJAL-2674 Rationalising iterators and retesting
2017-10-04 kiramtJAL-2674 Adjustments to hideColumns
2017-10-04 kiramtJAL-2674 more adjustments to locateVisibleBoundsOfSequence
2017-10-04 kiramtJAL-2674 Simplify locateVisibleBoundsOfSequence
2017-10-04 kiramtJAL-2674 tidy
2017-10-03 kiramtJAL-2674 testing
2017-10-03 kiramtJAL-2674 working refactor of drawPanel iteration
2017-10-03 gmungocJAL-2738 copy to spikes/mungo
2017-10-03 kiramtJAL-2674 2nd attempt to refactor seqcanvas drawing...
2017-10-02 kiramtJAL-2674 iterator for visible blocks with absolute...
2017-09-29 kiramtJAL-2674 Tidies
2017-09-29 kiramtJAL-2674 finish with iterators for now
2017-09-29 kiramtJAL=2674 Removed getHiddenColumnsCopy
2017-09-29 kiramtJAL-2674 reverted attempt at visible regions iterator
2017-09-28 kiramtJAL-2647 more iterators
2017-09-27 kiramtJAL-2674 Removing most calls to getHiddenColumnsCopy
2017-09-26 kiramtJAL-2674 Changes to pasting
2017-09-26 kiramtJAL-2674 HiddenColumns interface tidies
2017-09-26 kiramtJAL-2647 Added iterators and associated tests and bench...
2017-09-22 kiramtJAL-2674 add bounds to findHiddenRegionPositions
2017-09-21 kiramtJAL-2674 Rewrote propagateInsertions
2017-09-20 kiramtJAL-2674 fix up interface of locateVisibleBoundsOfSequence
2017-08-16 Jim ProcterJAL-2418 source formatting
2017-07-24 gmungocspike branch updated from latest features/JAL-2446
2017-06-29 kiramtJAL-2597 Fix and unit test bug/JAL-2597
2017-06-12 kiramtJAL-2591 Updates following code review
2017-06-09 gmungocJAL-2446 merged to spike branch
2017-06-08 kiramtJAL-2591 Refactor HiddenColumns to use ArrayList instea...
2017-06-08 kiramtJAL-2591 More HiddenColumns refactoring. Tests passing.
2017-06-07 kiramtJAL-2591 Further refactoring (still incomplete)
2017-06-07 kiramtJAL-2591 More refactoring (incomplete)
2017-06-07 kiramtJAL-2591 Hidden columns regions can be output to string...
2017-06-07 kiramtJAL-2591 updated HiddenColumns::findHiddenRegionPositio...
2017-06-07 kiramtJAL-2591 simplifying hidden columns usage
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