| 2006-07-26 |
jprocter | Implemented CIGAR representation of an Alignment view... |
tree | commitdiff |
| 2006-07-26 |
amwaterhouse | seqs[j] replaces current |
tree | commitdiff |
| 2006-07-26 |
amwaterhouse | Calculate overlap hidden regions |
tree | commitdiff |
| 2006-07-26 |
amwaterhouse | Remove left, right, empty cols work on hidden reps |
tree | commitdiff |
| 2006-07-25 |
amwaterhouse | ColumnSelection moved to datamodel |
tree | commitdiff |
| 2006-07-25 |
amwaterhouse | 1.1 compatible |
tree | commitdiff |
| 2006-07-25 |
amwaterhouse | Must be 1.1 compliant |
tree | commitdiff |
| 2006-07-25 |
amwaterhouse | Can have local file |
tree | commitdiff |
| 2006-07-25 |
amwaterhouse | If seq has a dataset, dont clear it |
tree | commitdiff |
| 2006-07-21 |
amwaterhouse | getFullAlignment |
tree | commitdiff |
| 2006-07-21 |
amwaterhouse | Remove note |
tree | commitdiff |
| 2006-07-21 |
amwaterhouse | DBRef is an array, not vector |
tree | commitdiff |
| 2006-07-19 |
amwaterhouse | datasetSeq bug |
tree | commitdiff |
| 2006-07-18 |
amwaterhouse | getSelectionAsNewSequence added |
tree | commitdiff |
| 2006-07-18 |
amwaterhouse | Takes a string, not sequence |
tree | commitdiff |
| 2006-07-18 |
jprocter | use of GapChars |
tree | commitdiff |
| 2006-07-13 |
amwaterhouse | Sequence is private |
tree | commitdiff |
| 2006-07-12 |
amwaterhouse | sequences are private in SequenceGroup |
tree | commitdiff |
| 2006-07-07 |
amwaterhouse | Redundant Remove Redundancy Removed |
tree | commitdiff |
| 2006-07-07 |
amwaterhouse | Checks on drawing characters and if sequence ref has... |
tree | commitdiff |
| 2006-06-15 |
amwaterhouse | Maintain status and position only for uniprot parsing |
tree | commitdiff |
| 2006-06-14 |
amwaterhouse | Status is now in otherData of feature |
tree | commitdiff |
| 2006-06-09 |
amwaterhouse | otherDetails |
tree | commitdiff |
| 2006-06-09 |
amwaterhouse | Remove getsfarray |
tree | commitdiff |
| 2006-06-09 |
amwaterhouse | getSequencesArray |
tree | commitdiff |
| 2006-06-08 |
jprocter | DBRefEntry.source enum type |
tree | commitdiff |
| 2006-06-07 |
amwaterhouse | Remove position, add score and links |
tree | commitdiff |
| 2006-05-15 |
amwaterhouse | All or nothing drawing display char |
tree | commitdiff |
| 2006-05-11 |
amwaterhouse | Maintain numbering if remove left is undone |
tree | commitdiff |
| 2006-05-11 |
amwaterhouse | Recently loaded files, urls, append sequences to Alignment |
tree | commitdiff |
| 2006-05-10 |
amwaterhouse | Correction for sequences with start not equal to 1 |
tree | commitdiff |
| 2006-05-10 |
amwaterhouse | Create sequence mapping for annotations |
tree | commitdiff |
| 2006-05-10 |
amwaterhouse | addAnnotation with seqRef |
tree | commitdiff |
| 2006-05-10 |
amwaterhouse | Changes case to end of alignment |
tree | commitdiff |
| 2006-05-02 |
amwaterhouse | Toggle case added to popup menu |
tree | commitdiff |
| 2006-04-28 |
amwaterhouse | Make sure end is less than sequence width |
tree | commitdiff |
| 2006-04-28 |
amwaterhouse | changeCase |
tree | commitdiff |
| 2006-04-10 |
amwaterhouse | Fixed protein desc bug |
tree | commitdiff |
| 2006-04-04 |
amwaterhouse | Pad gaps removes excess gaps |
tree | commitdiff |
| 2006-03-24 |
amwaterhouse | Add check if sequence already exists |
tree | commitdiff |
| 2006-03-24 |
amwaterhouse | FeaturesGroup added to constructor |
tree | commitdiff |
| 2006-03-16 |
amwaterhouse | Gethidden sequences |
tree | commitdiff |
| 2006-03-16 |
amwaterhouse | HiddenSequence methods |
tree | commitdiff |
| 2006-03-16 |
amwaterhouse | getHiddenSequences |
tree | commitdiff |
| 2006-03-16 |
amwaterhouse | Keeps a record of hidden sequences |
tree | commitdiff |
| 2006-02-24 |
amwaterhouse | Make variable public for speed of rendering |
tree | commitdiff |
| 2006-02-24 |
amwaterhouse | Features are now an array, not vector |
tree | commitdiff |
| 2006-02-24 |
amwaterhouse | Typo |
tree | commitdiff |
| 2006-02-15 |
amwaterhouse | FeatureGroups added |
tree | commitdiff |
| 2006-02-15 |
amwaterhouse | Removed SuperGroup |
tree | commitdiff |
| 2006-02-15 |
amwaterhouse | No longer used |
tree | commitdiff |
| 2006-02-09 |
amwaterhouse | New implementation for holding search results |
tree | commitdiff |
| 2006-02-03 |
amwaterhouse | has ref to annotation |
tree | commitdiff |
| 2006-02-03 |
amwaterhouse | Add annotation with sequence ref updated |
tree | commitdiff |
| 2006-01-30 |
amwaterhouse | AddAnnotation with start index |
tree | commitdiff |
| 2006-01-30 |
amwaterhouse | New files |
tree | commitdiff |
| 2006-01-11 |
jprocter | refactored Alignframe padGaps code to Alignment and... |
tree | commitdiff |
| 2005-12-22 |
amwaterhouse | graph now has type, not a boolean |
tree | commitdiff |
| 2005-12-22 |
amwaterhouse | Watch for trim left/right null widths |
tree | commitdiff |
| 2005-12-22 |
amwaterhouse | REGEX CANNOT BE STATIC |
tree | commitdiff |
| 2005-12-07 |
amwaterhouse | License added to new files |
tree | commitdiff |
| 2005-12-06 |
amwaterhouse | after merge |
tree | commitdiff |
| 2005-09-30 |
amwaterhouse | Remove redundancy in Eclipse |
tree | commitdiff |
| 2005-09-22 |
amwaterhouse | isNucleotide |
tree | commitdiff |
| 2005-08-22 |
amwaterhouse | Conservation colour scheme is no more |
tree | commitdiff |
| 2005-07-29 |
amwaterhouse | if endRes <1, calc the endRes |
tree | commitdiff |
| 2005-07-06 |
amwaterhouse | Remove group if sequences are null |
tree | commitdiff |
| 2005-06-30 |
amwaterhouse | Formatting changes |
tree | commitdiff |
| 2005-06-16 |
amwaterhouse | Sort Groups modified |
tree | commitdiff |
| 2005-06-14 |
amwaterhouse | remove system.out |
tree | commitdiff |
| 2005-06-14 |
amwaterhouse | reset if clustalX colouring |
tree | commitdiff |
| 2005-06-10 |
amwaterhouse | remove imports |
tree | commitdiff |
| 2005-06-10 |
amwaterhouse | set conservation/consensus in constructor |
tree | commitdiff |
| 2005-06-08 |
amwaterhouse | replace space |
tree | commitdiff |
| 2005-06-08 |
amwaterhouse | Recalc accelerated |
tree | commitdiff |
| 2005-06-08 |
amwaterhouse | Formatted source |
tree | commitdiff |
| 2005-06-08 |
amwaterhouse | GPL license added |
tree | commitdiff |
| 2005-05-26 |
jprocter | fixed use of PID rather than 'Comparison' Alignment... |
tree | commitdiff |
| 2005-05-26 |
amwaterhouse | toString modified |
tree | commitdiff |
| 2005-05-25 |
amwaterhouse | toString method added |
tree | commitdiff |
| 2005-05-25 |
jprocter | tidied up system.out messages and moved many to stderr. |
tree | commitdiff |
| 2005-05-24 |
amwaterhouse | replace get with elementAt |
tree | commitdiff |
| 2005-05-23 |
jprocter | added some assertions and rangechecks for insert/delete... |
tree | commitdiff |
| 2005-05-23 |
jprocter | added getSequencesInOrder (part of refactor from AlignP... |
tree | commitdiff |
| 2005-05-23 |
amwaterhouse | historyitem added |
tree | commitdiff |
| 2005-05-22 |
jprocter | Added alignment ordering option to 'Sort by' and implem... |
tree | commitdiff |
| 2005-05-20 |
jprocter | added tree node property for sequence placeholders. |
tree | commitdiff |
| 2005-05-19 |
amwaterhouse | calculate max and min for graph |
tree | commitdiff |
| 2005-05-12 |
amwaterhouse | conservation removed |
tree | commitdiff |
| 2005-05-05 |
amwaterhouse | pdbfile details not essential to sequence |
tree | commitdiff |
| 2005-05-03 |
amwaterhouse | 1.1 compatible |
tree | commitdiff |
| 2005-04-28 |
amwaterhouse | set gap char modified |
tree | commitdiff |
| 2005-04-15 |
amwaterhouse | conservation & consensus recalc if group changed |
tree | commitdiff |
| 2005-04-08 |
jprocter | Alignment quality with funky coloured histograms. |
tree | commitdiff |
| 2005-04-06 |
jprocter | New method for helping to quickly map different aligned... |
tree | commitdiff |
| 2005-04-01 |
amwaterhouse | Alignment Annotation added |
tree | commitdiff |
| 2005-03-23 |
amwaterhouse | adjustForRemoveLeft / Right added |
tree | commitdiff |
| 2005-03-21 |
amwaterhouse | group has outline colour |
tree | commitdiff |
| 2005-03-18 |
jprocter | Tree io modifications, including support for polytomous... |
tree | commitdiff |
| 2005-03-09 |
amwaterhouse | allows deletion of chars |
tree | commitdiff |
| next |
git://source.jalview.org / jalview.git / history