2017-04-17 |
gmungoc | JAL-2446 promote Range from test to src to replace... |
tree | commitdiff |
2017-04-17 |
gmungoc | JAL-2446 tidied up / generalised binary search in Featu... |
tree | commitdiff |
2017-04-17 |
gmungoc | JAL-2446 add call to SequenceFeatures.delete(); use... |
tree | commitdiff |
2017-04-12 |
gmungoc | JAL-2446 getGroups, getFeatures for positional/non... |
tree | commitdiff |
2017-04-11 |
gmungoc | JAL-2446 find feature types for one or more groups... |
tree | commitdiff |
2017-04-11 |
gmungoc | JAL-2446 getFeatureTypesForGroup() added |
tree | commitdiff |
2017-04-11 |
gmungoc | JAL-2446 added getFeatureGroups |
tree | commitdiff |
2017-04-10 |
gmungoc | JAL-2446 SequenceFeatures.hasFeatures() added |
tree | commitdiff |
2017-04-10 |
gmungoc | JAL-2446 FeatureStore.isEmpty() added |
tree | commitdiff |
2017-04-07 |
gmungoc | Merge branch 'develop' into features/JAL-2393customMatrices |
tree | commitdiff |
2017-04-07 |
gmungoc | JAL-2446 fix size maintenance during add |
tree | commitdiff |
2017-04-07 |
gmungoc | JAL-2446 added delete/contains to pseudo-random tests... |
tree | commitdiff |
2017-04-06 |
gmungoc | JAL-2446 added contains, delete, checks for inclusion... |
tree | commitdiff |
2017-04-06 |
gmungoc | JAL-2446 pseudo-random test of findOverlaps, bug fix... |
tree | commitdiff |
2017-04-05 |
gmungoc | JAL-2446 various get and find methods added with test... |
tree | commitdiff |
2017-04-05 |
gmungoc | JAL-2446 method isNonPositional() added |
tree | commitdiff |
2017-04-03 |
gmungoc | JAL-2446 pseudo-random generator unit test, and fixes... |
tree | commitdiff |
2017-03-31 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
tree | commitdiff |
2017-03-31 |
gmungoc | JAL-2405 additional checks for circular reference in... |
tree | commitdiff |
2017-03-30 |
gmungoc | Merge branch 'develop' into bug/JAL-2346annotationChoice |
tree | commitdiff |
2017-03-29 |
kiramt | JAL-2388 New rendering code, extensions to support... |
tree | commitdiff |
2017-03-29 |
kiramt | JAL-2388 New iterators and tests |
tree | commitdiff |
2017-03-23 |
gmungoc | Merge branch 'develop' into features/JAL-2393customMatrices |
tree | commitdiff |
2017-03-21 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList features/JAL-653_JAL-1766_htslib_refseqsupport |
tree | commitdiff |
2017-03-21 |
Jim Procter | Merge branch 'features/JAL-2388OverviewWindow' into... |
tree | commitdiff |
2017-03-20 |
gmungoc | JAL-2446 FeatureStore with NCList - work in progress |
tree | commitdiff |
2017-03-17 |
kiramt | JAL-2437 Synchronization corrections and unit tests |
tree | commitdiff |
2017-03-17 |
kiramt | JAL-2388 Renamed column and row subtraction functions |
tree | commitdiff |
2017-03-15 |
kiramt | JAL-2388 Unit tests and tidies |
tree | commitdiff |
2017-03-14 |
kiramt | JAL-2388 New hidden cols/seqs functions to support... |
tree | commitdiff |
2017-03-10 |
kiramt | JAL-2437 Fixed reordering of sequences when hiding... |
tree | commitdiff |
2017-03-07 |
kiramt | JAL-2388 Missed commit |
tree | commitdiff |
2017-03-07 |
kiramt | Merge remote-tracking branch 'origin/develop' into... |
tree | commitdiff |
2017-03-07 |
kiramt | JAL-2429 findColumnPosition returns 0 for cols in regio... |
tree | commitdiff |
2017-03-07 |
kiramt | JAL-2429 Additional fix to ColumnSelection when hidden... |
tree | commitdiff |
2017-03-03 |
kiramt | JAL-2429 Fix to ColumnSelection::findColumnPosition |
tree | commitdiff |
2017-03-03 |
kiramt | JAL-2388 Initial removal of hidden cols/seqs out of... |
tree | commitdiff |
2017-03-01 |
gmungoc | Merge branch 'features/JAL-2295setChimeraAttributes... |
tree | commitdiff |
2017-02-23 |
gmungoc | JAL-2403 JAL-1483 changes to ScoreModelI hierarchy... |
tree | commitdiff |
2017-02-21 |
gmungoc | Merge branch 'develop' into features/JAL-2393customMatrices |
tree | commitdiff |
2017-02-20 |
gmungoc | JAL-2403 ScoreModelI now DistanceModelI, ScoreMatrix... |
tree | commitdiff |
2017-02-20 |
Jim Procter | Merge branch 'features/JAL-2379pcaMemory' into develop |
tree | commitdiff |
2017-02-15 |
Jim Procter | JAL-2374 new contains methods for seq and seq,apos |
tree | commitdiff |
2017-02-15 |
Jim Procter | JAL-2374 javadoc - qualify that sequence argument to... |
tree | commitdiff |
2017-02-14 |
gmungoc | Merge branch 'develop' into bug/JAL-2346annotationChoice |
tree | commitdiff |
2017-02-13 |
gmungoc | JAL-1632 JAL-2416 load score matrices from file, as... |
tree | commitdiff |
2017-02-13 |
gmungoc | JAL-1632 first cut of Tree chooser dialog and ScoreMode... |
tree | commitdiff |
2017-02-09 |
gmungoc | Merge branch 'develop' into features/JAL-2379pcaMemory features/JAL-2379pcaMemory |
tree | commitdiff |
2017-02-09 |
gmungoc | JAL-2405 check for circular reference in SequenceGroup... |
tree | commitdiff |
2017-01-27 |
gmungoc | JAL-2371 CollectionColourScheme renamed ResidueShader... |
tree | commitdiff |
2017-01-27 |
gmungoc | JAL-2360 JAL-2371 updates from review CR-JAL-1 |
tree | commitdiff |
2017-01-26 |
gmungoc | Merge branch 'develop' into features/JAL-2379pcaMemory |
tree | commitdiff |
2017-01-20 |
gmungoc | Merge branch 'features/JAL-2360colourSchemeApplicabilit... |
tree | commitdiff |
2017-01-20 |
gmungoc | Merge branch 'develop' into features/JAL-2360colourSche... |
tree | commitdiff |
2017-01-19 |
gmungoc | JAL-2370 corrected applet mouse drag, refactored into... |
tree | commitdiff |
2017-01-17 |
gmungoc | Merge branch 'develop' into features/JAL-2295setChimera... |
tree | commitdiff |
2017-01-17 |
gmungoc | JAL-2370 fix bug when hiding a range including two... |
tree | commitdiff |
2017-01-17 |
gmungoc | JAL-2379 use SparseMatrix for encoded sequences, tidy... |
tree | commitdiff |
2017-01-09 |
gmungoc | JAL-2371 pull up isNucleotide to SequenceCollectionI |
tree | commitdiff |
2017-01-06 |
gmungoc | Merge branch 'features/JAL-2360colourSchemeApplicabilit... |
tree | commitdiff |
2017-01-06 |
gmungoc | Merge branch 'develop' into features/JAL-2360colourSche... |
tree | commitdiff |
2017-01-05 |
gmungoc | JAL-2374 fix popup out by one and multiple groups bugs |
tree | commitdiff |
2017-01-05 |
gmungoc | JAL-2371 tests added |
tree | commitdiff |
2017-01-04 |
gmungoc | JAL-2371 CollectionColourScheme wraps ColourSchemeI |
tree | commitdiff |
2016-12-21 |
gmungoc | JAL-2360 Javadoc and test cases for findAnnotation |
tree | commitdiff |
2016-12-14 |
gmungoc | JAL-2360 added check for null annotations array |
tree | commitdiff |
2016-12-12 |
gmungoc | JAL-2360 simplify nucleotide flag, remove setter |
tree | commitdiff |
2016-12-02 |
gmungoc | Merge branch 'features/JAL-1933_occupancy' into feature... |
tree | commitdiff |
2016-12-02 |
gmungoc | JAL-2346 unit test for annotation drop-down list builder |
tree | commitdiff |
2016-12-01 |
Jim Procter | JAL-1933 update the bounds for the Gap annotation row... |
tree | commitdiff |
2016-11-30 |
gmungoc | Merge branch 'develop' into features/JAL-2295setChimera... |
tree | commitdiff |
2016-11-30 |
gmungoc | JAL-2344 use ".cif" for saved mmCIF file (and refactor... |
tree | commitdiff |
2016-11-29 |
gmungoc | Merge branch 'develop' into features/JAL-2295setChimera... |
tree | commitdiff |
2016-11-25 |
gmungoc | Merge branch 'develop' into trialMerge |
tree | commitdiff |
2016-11-24 |
Jim Procter | JAL-2325 apply license to new source files |
tree | commitdiff |
2016-11-23 |
Jim Procter | Merge branch 'bug/JAL-2323disulfideOverview' into develop |
tree | commitdiff |
2016-11-23 |
gmungoc | Merge branch 'develop' into features/JAL-2295setChimera... |
tree | commitdiff |
2016-11-22 |
Jim Procter | Merge branch 'features/JAL-1738_JAL-345_selectionfromhi... |
tree | commitdiff |
2016-11-21 |
gmungoc | Merge branch 'develop' into bug/JAL-2323disulfideOverview |
tree | commitdiff |
2016-11-18 |
gmungoc | JAL-98 with the two types missing from last commit... bug/JAL-98consensusMemory |
tree | commitdiff |
2016-11-17 |
gmungoc | JAL-98 ProfilesI container for profiles for columns |
tree | commitdiff |
2016-11-17 |
gmungoc | JAL-2327 add isContactFeature |
tree | commitdiff |
2016-11-16 |
gmungoc | JAL-2324 fix and tests for comparison of Float.NaN... |
tree | commitdiff |
2016-11-16 |
gmungoc | Merge branch 'develop' into features/JAL-2295setChimera... |
tree | commitdiff |
2016-11-14 |
gmungoc | JAL-2296 report whether SequenceFeature actually added... |
tree | commitdiff |
2016-11-10 |
tcofoegbu | Bugfix to enable accurate chain extraction/association... |
tree | commitdiff |
2016-11-04 |
gmungoc | JAL-966 JAL-1854 removed redundant methods / modifiers... |
tree | commitdiff |
2016-11-02 |
Jim Procter | JAL-345 javadoc and note about JAL-2300 |
tree | commitdiff |
2016-11-02 |
Jim Procter | JAL-354 JAL-1738 add returns SearchResultMatchI instanc... |
tree | commitdiff |
2016-11-02 |
Jim Procter | JAL-966 JAL-345 JAL-1738 decontaminate SearchResultI... |
tree | commitdiff |
2016-11-02 |
gmungoc | JAL-98 JAL-1854 encapsulate 'magic number' threshold... |
tree | commitdiff |
2016-11-02 |
gmungoc | JAL-98 ProfileI interface for Profile |
tree | commitdiff |
2016-11-02 |
gmungoc | JAL-98 Profile and ResidueCount moved from analysis... |
tree | commitdiff |
2016-11-01 |
Jim Procter | JAL-1738 JAL-345 fix broken calculation of newly marked... |
tree | commitdiff |
2016-10-30 |
Jim Procter | JAL-345 JAL-1738 SearchResultI method to mark columns... |
tree | commitdiff |
2016-10-30 |
Jim Procter | JAL-966 clarify javadoc for SearchResultsI.getResults |
tree | commitdiff |
2016-10-28 |
Jim Procter | JAL-966 JAL-1738 JAL-345 interfaces for SearchResults... |
tree | commitdiff |
2016-10-25 |
Jim Procter | JAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch |
tree | commitdiff |
2016-10-24 |
Jim Procter | Merge branch 'releases/Release_2_10_0_Branch' |
tree | commitdiff |
2016-10-24 |
gmungoc | Merge branch 'develop' into bug/JAL-98consensusMemory |
tree | commitdiff |
next |