*/
protected boolean sliderDragging = false;
+ protected JComboBox<String> threshold = new JComboBox<String>();
+
+ protected JComboBox<String> annotations;
+
+ /*
+ * map from annotation to its menu item display label
+ * - so we know which item to pre-select on restore
+ */
+ private Map<AlignmentAnnotation, String> annotationLabels;
+
+ private AlignmentAnnotation currentAnnotation;
+
+ /**
+ * Constructor
+ *
- * @param av
- * @param ap
++ * @param viewport
++ * @param alignPanel
+ */
- public AnnotationRowFilter(AlignViewport av, final AlignmentPanel ap)
++ public AnnotationRowFilter(AlignViewport viewport, final AlignmentPanel alignPanel)
+ {
- this.av = av;
- this.ap = ap;
++ this.av = viewport;
++ this.ap = alignPanel;
+ thresholdValue.addFocusListener(new FocusAdapter()
+ {
+ @Override
+ public void focusLost(FocusEvent e)
+ {
+ thresholdValue_actionPerformed();
+ }
+ });
+ }
+
protected void addSliderChangeListener()
{
});
}
- /**
- * Builds and returns a list of menu items (display text) for choice of
- * annotation. Also builds maps between annotations, their positions in the
- * list, and their display labels in the list.
- *
- * @param isSeqAssociated
- * @return
- */
- public AnnotationRowFilter(AlignViewport av, final AlignmentPanel ap)
- {
- this.av = av;
- this.ap = ap;
- thresholdValue.addFocusListener(new FocusAdapter()
- {
- @Override
- public void focusLost(FocusEvent e)
- {
- thresholdValue_actionPerformed();
- }
- });
- }
-
- public AnnotationRowFilter()
- {
-
- }
-
++/**
++ * Builds and returns a list of menu items (display text) for choice of
++ * annotation. Also builds maps between annotations, their positions in the
++ * list, and their display labels in the list.
++ *
++ * @param isSeqAssociated
++ * @return
++ */
public Vector<String> getAnnotationItems(boolean isSeqAssociated)
{
+ annotationLabels = new HashMap<AlignmentAnnotation, String>();
+
Vector<String> list = new Vector<String>();
int index = 1;
int[] anmap = new int[av.getAlignment().getAlignmentAnnotation().length];
}
}
- protected boolean colorAlignmContaining(AlignmentAnnotation currentAnn,
- int selectedThresholdOption)
+ public AlignmentAnnotation getCurrentAnnotation()
{
+ return currentAnnotation;
+ }
- protected void setCurrentAnnotation(AlignmentAnnotation currentAnnotation)
- AnnotationColourGradient acg = null;
- if (currentColours.isSelected())
- {
- acg = new AnnotationColourGradient(currentAnn,
- av.getGlobalColourScheme(), selectedThresholdOption);
- }
- else
- {
- acg = new AnnotationColourGradient(currentAnn,
- minColour.getBackground(), maxColour.getBackground(),
- selectedThresholdOption);
- }
- acg.setSeqAssociated(seqAssociated.isSelected());
++ protected void setCurrentAnnotation(AlignmentAnnotation annotation)
+ {
- this.currentAnnotation = currentAnnotation;
++ this.currentAnnotation = annotation;
+ }
- if (currentAnn.graphMin == 0f && currentAnn.graphMax == 0f)
- {
- acg.setPredefinedColours(true);
- }
+ protected abstract void valueChanged(boolean updateAllAnnotation);
- acg.thresholdIsMinMax = thresholdIsMin.isSelected();
+ protected abstract void updateView();
- av.setGlobalColourScheme(acg);
+ protected abstract void reset();
- if (av.getAlignment().getGroups() != null)
+ protected String getAnnotationMenuLabel(AlignmentAnnotation ann)
+ {
+ return annotationLabels.get(ann);
+ }
+
+ protected void jbInit()
+ {
+ ok.setOpaque(false);
+ ok.setText(MessageManager.getString("action.ok"));
+ ok.addActionListener(new ActionListener()
{
+ @Override
+ public void actionPerformed(ActionEvent e)
+ {
+ ok_actionPerformed();
+ }
+ });
- for (SequenceGroup sg : ap.av.getAlignment().getGroups())
+ cancel.setOpaque(false);
+ cancel.setText(MessageManager.getString("action.cancel"));
+ cancel.addActionListener(new ActionListener()
+ {
+ @Override
+ public void actionPerformed(ActionEvent e)
{
- if (sg.cs == null)
- {
- continue;
- }
+ cancel_actionPerformed();
+ }
+ });
- AnnotationColourGradient scheme = null;
- if (currentColours.isSelected())
- {
- scheme = new AnnotationColourGradient(currentAnn,
- sg.getColourScheme(), selectedThresholdOption);
- }
- else
- {
- scheme = new AnnotationColourGradient(currentAnn,
- minColour.getBackground(), maxColour.getBackground(),
- selectedThresholdOption);
- }
- scheme.setSeqAssociated(seqAssociated.isSelected());
- sg.setColourScheme(scheme);
+ annotations.addItemListener(new ItemListener()
+ {
+ @Override
+ public void itemStateChanged(ItemEvent e)
+ {
+ selectedAnnotationChanged();
}
- }
- return false;
+ });
+ annotations.setToolTipText(MessageManager
+ .getString("info.select_annotation_row"));
+
+ threshold.addActionListener(new ActionListener()
+ {
+ @Override
+ public void actionPerformed(ActionEvent e)
+ {
+ threshold_actionPerformed();
+ }
+ });
+
+ thresholdValue.setEnabled(false);
+ thresholdValue.setColumns(7);
+ thresholdValue.addActionListener(new ActionListener()
+ {
+ @Override
+ public void actionPerformed(ActionEvent e)
+ {
+ thresholdValue_actionPerformed();
+ }
+ });
+
+ slider.setPaintLabels(false);
+ slider.setPaintTicks(true);
+ slider.setBackground(Color.white);
+ slider.setEnabled(false);
+ slider.setOpaque(false);
+ slider.setPreferredSize(new Dimension(100, 32));
}
- public jalview.datamodel.AlignmentAnnotation getCurrentAnnotation()
+ public JComboBox<String> getThreshold()
{
- return currentAnnotation;
+ return threshold;
}
- public void setCurrentAnnotation(
- jalview.datamodel.AlignmentAnnotation currentAnnotation)
+ public void setThreshold(JComboBox<String> thresh)
{
- this.currentAnnotation = currentAnnotation;
+ this.threshold = thresh;
}
- public abstract void valueChanged(boolean updateAllAnnotation);
-
- public abstract void updateView();
+ public JComboBox<String> getAnnotations()
+ {
+ return annotations;
+ }
- public abstract void reset();
+ public void setAnnotations(JComboBox<String> anns)
+ {
+ this.annotations = anns;
+ }
}
git://source.jalview.org / jalview.git / commitdiff