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JAL-2256 Corrected AllCols/Rows iterator behaviour for single element
[jalview.git] / src / jalview / datamodel /
2017-05-18 kiramtJAL-2256 Corrected AllCols/Rows iterator behaviour... bug/JAL-2256 tree | commitdiff
2017-05-16 kiramtJAL-2388 Rationalised hashCode method in HiddenColumns tree | commitdiff
2017-05-12 Jim ProcterMerge branch 'features/JAL-2388OverviewWindow' into... tree | commitdiff
2017-05-11 Jim ProcterJAL-2507 test if an annotation is ‘whitespace’ tree | commitdiff
2017-05-11 Jim ProcterJAL-2507 Annotation.EMPTY_ANNOTATION - non-null whitesp... tree | commitdiff
2017-05-05 kiramtMerge remote-tracking branch tree | commitdiff
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into features/JAL-2388hiddencolumnschanges tree | commitdiff
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into tree | commitdiff
2017-05-03 Jim ProcterJAL-2503 AlignmentAnnotation.isQuantitative() test tree | commitdiff
2017-05-02 Jim ProcterMerge branch 'develop' into features/JAL-2393customMatrices tree | commitdiff
2017-05-02 Jim ProcterMerge branch 'bug/JAL-2424getVisibleContigs' into develop tree | commitdiff
2017-04-28 gmungocMerge branch 'develop' into features/JAL-2393customMatrices tree | commitdiff
2017-04-27 Jim ProcterJAL-2494 fix: updated behaviour for SequenceGroup.findA... tree | commitdiff
2017-04-27 Jim ProcterJAL-2494 fixed behaviour for null parameters in line... tree | commitdiff
2017-04-27 Jim ProcterJAL-2494 javadoc for AnnotatedCollectionI.findAnnotations tree | commitdiff
2017-04-26 kiramtMerge remote-tracking branch 'origin/features/JAL-2388h... tree | commitdiff
2017-04-26 kiramtJAL-2388 last separation of hidden columns/col selection tree | commitdiff
2017-04-26 kiramtJAL-2388 Tidies and unit tests tree | commitdiff
2017-04-25 kiramtJAL-2388 Working hidden regions hide/show in desktop tree | commitdiff
2017-04-24 kiramtMerge remote-tracking branch tree | commitdiff
2017-04-24 kiramtJAL-2388 Finished split of hidden columns and selected... tree | commitdiff
2017-04-24 gmungocJAL-2424 final contig now an inclusive range bug/JAL-2424getVisibleContigs tree | commitdiff
2017-04-24 kiramtJAL-2388 Hidden cols separated from column selection... tree | commitdiff
2017-04-21 kiramtJAL-2388 Alignment col and row collections with iterators tree | commitdiff
2017-04-19 kiramtMerge remote-tracking branch 'origin/develop' into tree | commitdiff
2017-04-07 gmungocMerge branch 'develop' into features/JAL-2393customMatrices tree | commitdiff
2017-03-31 gmungocJAL-2405 additional checks for circular reference in... tree | commitdiff
2017-03-30 gmungocMerge branch 'develop' into bug/JAL-2346annotationChoice tree | commitdiff
2017-03-29 kiramtJAL-2388 New rendering code, extensions to support... tree | commitdiff
2017-03-29 kiramtJAL-2388 New iterators and tests tree | commitdiff
2017-03-23 gmungocMerge branch 'develop' into features/JAL-2393customMatrices tree | commitdiff
2017-03-21 Jim ProcterMerge branch 'features/JAL-2388OverviewWindow' into... tree | commitdiff
2017-03-17 kiramtJAL-2437 Synchronization corrections and unit tests tree | commitdiff
2017-03-17 kiramtJAL-2388 Renamed column and row subtraction functions tree | commitdiff
2017-03-15 kiramtJAL-2388 Unit tests and tidies tree | commitdiff
2017-03-14 kiramtJAL-2388 New hidden cols/seqs functions to support... tree | commitdiff
2017-03-10 kiramtJAL-2437 Fixed reordering of sequences when hiding... tree | commitdiff
2017-03-07 kiramtJAL-2388 Missed commit tree | commitdiff
2017-03-07 kiramtMerge remote-tracking branch 'origin/develop' into... tree | commitdiff
2017-03-07 kiramtJAL-2429 findColumnPosition returns 0 for cols in regio... tree | commitdiff
2017-03-07 kiramtJAL-2429 Additional fix to ColumnSelection when hidden... tree | commitdiff
2017-03-03 kiramtJAL-2429 Fix to ColumnSelection::findColumnPosition tree | commitdiff
2017-03-03 kiramtJAL-2388 Initial removal of hidden cols/seqs out of... tree | commitdiff
2017-03-01 gmungocMerge branch 'features/JAL-2295setChimeraAttributes... tree | commitdiff
2017-02-23 gmungocJAL-2403 JAL-1483 changes to ScoreModelI hierarchy... tree | commitdiff
2017-02-21 gmungocMerge branch 'develop' into features/JAL-2393customMatrices tree | commitdiff
2017-02-20 gmungocJAL-2403 ScoreModelI now DistanceModelI, ScoreMatrix... tree | commitdiff
2017-02-20 Jim ProcterMerge branch 'features/JAL-2379pcaMemory' into develop tree | commitdiff
2017-02-15 Jim ProcterJAL-2374 new contains methods for seq and seq,apos tree | commitdiff
2017-02-15 Jim ProcterJAL-2374 javadoc - qualify that sequence argument to... tree | commitdiff
2017-02-14 gmungocMerge branch 'develop' into bug/JAL-2346annotationChoice tree | commitdiff
2017-02-13 gmungocJAL-1632 JAL-2416 load score matrices from file, as... tree | commitdiff
2017-02-13 gmungocJAL-1632 first cut of Tree chooser dialog and ScoreMode... tree | commitdiff
2017-02-09 gmungocMerge branch 'develop' into features/JAL-2379pcaMemory features/JAL-2379pcaMemory tree | commitdiff
2017-02-09 gmungocJAL-2405 check for circular reference in SequenceGroup... tree | commitdiff
2017-01-27 gmungocJAL-2371 CollectionColourScheme renamed ResidueShader... tree | commitdiff
2017-01-27 gmungocJAL-2360 JAL-2371 updates from review CR-JAL-1 tree | commitdiff
2017-01-26 gmungocMerge branch 'develop' into features/JAL-2379pcaMemory tree | commitdiff
2017-01-20 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit... tree | commitdiff
2017-01-20 gmungocMerge branch 'develop' into features/JAL-2360colourSche... tree | commitdiff
2017-01-19 gmungocJAL-2370 corrected applet mouse drag, refactored into... tree | commitdiff
2017-01-17 gmungocMerge branch 'develop' into features/JAL-2295setChimera... tree | commitdiff
2017-01-17 gmungocJAL-2370 fix bug when hiding a range including two... tree | commitdiff
2017-01-17 gmungocJAL-2379 use SparseMatrix for encoded sequences, tidy... tree | commitdiff
2017-01-09 gmungocJAL-2371 pull up isNucleotide to SequenceCollectionI tree | commitdiff
2017-01-06 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit... tree | commitdiff
2017-01-06 gmungocMerge branch 'develop' into features/JAL-2360colourSche... tree | commitdiff
2017-01-05 gmungocJAL-2374 fix popup out by one and multiple groups bugs tree | commitdiff
2017-01-05 gmungocJAL-2371 tests added tree | commitdiff
2017-01-04 gmungocJAL-2371 CollectionColourScheme wraps ColourSchemeI tree | commitdiff
2016-12-21 gmungocJAL-2360 Javadoc and test cases for findAnnotation tree | commitdiff
2016-12-14 gmungocJAL-2360 added check for null annotations array tree | commitdiff
2016-12-12 gmungocJAL-2360 simplify nucleotide flag, remove setter tree | commitdiff
2016-12-02 gmungocMerge branch 'features/JAL-1933_occupancy' into feature... tree | commitdiff
2016-12-02 gmungocJAL-2346 unit test for annotation drop-down list builder tree | commitdiff
2016-12-01 Jim ProcterJAL-1933 update the bounds for the Gap annotation row... tree | commitdiff
2016-11-30 gmungocMerge branch 'develop' into features/JAL-2295setChimera... tree | commitdiff
2016-11-30 gmungocJAL-2344 use ".cif" for saved mmCIF file (and refactor... tree | commitdiff
2016-11-29 gmungocMerge branch 'develop' into features/JAL-2295setChimera... tree | commitdiff
2016-11-25 gmungocMerge branch 'develop' into trialMerge tree | commitdiff
2016-11-24 Jim ProcterJAL-2325 apply license to new source files tree | commitdiff
2016-11-23 Jim ProcterMerge branch 'bug/JAL-2323disulfideOverview' into develop tree | commitdiff
2016-11-23 gmungocMerge branch 'develop' into features/JAL-2295setChimera... tree | commitdiff
2016-11-22 Jim ProcterMerge branch 'features/JAL-1738_JAL-345_selectionfromhi... tree | commitdiff
2016-11-21 gmungocMerge branch 'develop' into bug/JAL-2323disulfideOverview tree | commitdiff
2016-11-18 gmungocJAL-98 with the two types missing from last commit... bug/JAL-98consensusMemory tree | commitdiff
2016-11-17 gmungocJAL-98 ProfilesI container for profiles for columns tree | commitdiff
2016-11-17 gmungocJAL-2327 add isContactFeature tree | commitdiff
2016-11-16 gmungocJAL-2324 fix and tests for comparison of Float.NaN... tree | commitdiff
2016-11-16 gmungocMerge branch 'develop' into features/JAL-2295setChimera... tree | commitdiff
2016-11-14 gmungocJAL-2296 report whether SequenceFeature actually added... tree | commitdiff
2016-11-10 tcofoegbuBugfix to enable accurate chain extraction/association... tree | commitdiff
2016-11-04 gmungocJAL-966 JAL-1854 removed redundant methods / modifiers... tree | commitdiff
2016-11-02 Jim ProcterJAL-345 javadoc and note about JAL-2300 tree | commitdiff
2016-11-02 Jim ProcterJAL-354 JAL-1738 add returns SearchResultMatchI instanc... tree | commitdiff
2016-11-02 Jim ProcterJAL-966 JAL-345 JAL-1738 decontaminate SearchResultI... tree | commitdiff
2016-11-02 gmungocJAL-98 JAL-1854 encapsulate 'magic number' threshold... tree | commitdiff
2016-11-02 gmungocJAL-98 ProfileI interface for Profile tree | commitdiff
2016-11-02 gmungocJAL-98 Profile and ResidueCount moved from analysis... tree | commitdiff
2016-11-01 Jim ProcterJAL-1738 JAL-345 fix broken calculation of newly marked... tree | commitdiff
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