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JAL-2999 release date for 2.10.4b1 set for 27th May 2018
[jalview.git]
/
src
/
jalview
/
datamodel
/
2018-05-10
Jim Procter
Merge branch 'bug/JAL-2920_uniprotvariantfeature' into...
tree
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commitdiff
2018-05-10
Jim Procter
JAL-2920 simplified logic and added corner cases for...
tree
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commitdiff
2018-05-07
Jim Procter
JAL-2906 apply GPLv3 license source
tree
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commitdiff
2018-04-23
gmungoc
JAL-2954 more efficient SearchResults.markColumns
tree
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commitdiff
2018-03-14
gmungoc
JAL-2893 include ENSEMBLGENOMES as a 'roundtrip db...
tree
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commitdiff
2018-03-07
gmungoc
JAL-2925 handle empty annotation when copying group...
tree
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commitdiff
2018-02-27
Jim Procter
Merge branch 'feature/JAL-2759' into merge/JAL-2759_2104
tree
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commitdiff
2018-02-26
Jim Procter
JAL-2920 parse variation and original elements of the...
tree
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commitdiff
2018-02-21
Jim Procter
Merge branch 'bug/JAL-2778again' into releases/Release_...
tree
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commitdiff
2018-02-21
kiramt
JAL-2778 Revert back to old synchronisation
tree
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commitdiff
2018-02-06
kiramt
Merge branch 'develop' into feature/JAL-2759
feature/JAL-2759
tree
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commitdiff
2018-02-05
Jim Procter
JAL-2780 JAL-2781 - patch and first test for AlignmentI...
tree
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commitdiff
2018-02-05
kiramt
JAL-2759 Fix errant RangeElementsIterator (unit tests...
tree
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commitdiff
2018-02-05
kiramt
JAL-2759 Rename getBoundedStartIterator
tree
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commitdiff
2018-02-05
kiramt
JAL-2759 Changes to StartRegionIterator after review
tree
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commitdiff
2018-02-05
kiramt
JAL-2788 possible adjustments to sequence accesses
tree
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commitdiff
2018-02-01
kiramt
JAL-2759 use right iterator for getVisibleColsIterator
tree
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commitdiff
2018-01-31
kiramt
JAL-2759 Rationalise VisibleColsIterator and HiddenCols...
tree
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commitdiff
2018-01-31
kiramt
JAL-2759 Generalised HiddenColsIterator naming
tree
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commitdiff
2018-01-31
kiramt
JAL-2759 minor refactor to hiding bitsets
tree
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commitdiff
2018-01-30
kiramt
JAL-2759 Add missing hiddenColumns empty check
tree
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commitdiff
2018-01-30
kiramt
JAL-2759 updateForDeletedRegion no longer needed
tree
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commitdiff
2018-01-30
kiramt
JAL-2759 Rationalising hidden cols cursor, and sorting...
tree
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commitdiff
2018-01-30
kiramt
JAL-2759 comment
tree
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commitdiff
2018-01-30
kiramt
JAL-2759 Additional tests and tweaks to numColumns...
tree
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commitdiff
2018-01-30
kiramt
JAL-2759 Keep numColumns up to date
tree
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commitdiff
2018-01-29
kiramt
JAL-2759 Combine findRegionForColumn code in HiddenColu...
tree
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commitdiff
2018-01-29
kiramt
JAL-2759 numColumns reset
tree
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commitdiff
2018-01-29
kiramt
JAL-2759 remove redundant hiddenColumns.clear()
tree
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commitdiff
2018-01-29
kiramt
JAL-2759 Tidy
tree
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commitdiff
2018-01-29
kiramt
JAL-2759 make a new cursor instead of resetting, update...
tree
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commitdiff
2018-01-29
kiramt
JAL-2759 Fix unintended type change
tree
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commitdiff
2018-01-26
kiramt
JAL-2778 try another way to draw sequences with reduced...
tree
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commitdiff
2018-01-22
kiramt
JAL-2579 Moved locateVisibleStartOfSequence to Sequence...
tree
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commitdiff
2018-01-22
kiramt
JAL-2759 Various minor HiddenColumns updates after...
tree
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commitdiff
2018-01-19
kiramt
JAL-2759 Changes to getVisibleSequenceStrings after...
tree
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commitdiff
2018-01-19
kiramt
JAL-2759 Moved propagateInsertions out of HiddenColumns
tree
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commitdiff
2018-01-19
kiramt
JAL-2759 Update to getVisibleStartAndEndIndex after...
tree
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commitdiff
2018-01-18
kiramt
JAL-2759 change subtractVisibleColumns and removal...
tree
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commitdiff
2018-01-18
kiramt
JAL-2759 Updated test
tree
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commitdiff
2018-01-18
kiramt
JAL-2759 unit tests (incomplete)
tree
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commitdiff
2018-01-16
kiramt
JAL-2759 setup hideBitSet over range for hideInsertions
tree
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commitdiff
2018-01-16
kiramt
JAL-2759 Moved alignment annotation code out of HiddenC...
tree
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commitdiff
2018-01-16
kiramt
JAL-2759 Replaced StringBuffer with StringBuilder;...
tree
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commitdiff
2018-01-15
kiramt
JAL-2759 More compact iterator usage; after review
tree
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commitdiff
2018-01-15
kiramt
JAL-2759 First pass instantiate hiddenColumns collectio...
tree
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commitdiff
2018-01-15
kiramt
JAL-2759 getVisContigsIterator returns VisibleContigsIt...
tree
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commitdiff
2018-01-15
kiramt
JAL-2759 Rename hideInsertionsFor to hideList, after...
tree
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commitdiff
2018-01-15
kiramt
JAL-2759 Refactor of hideInsertionsFor after review
tree
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commitdiff
2018-01-15
kiramt
JAL-2759 Simplified HiddenColumns constructor after...
tree
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commitdiff
2018-01-15
kiramt
JAL-2759 Changed VisibleColsCollection constructor...
tree
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commitdiff
2018-01-15
kiramt
JAL-2759 Minor doc and naming changes
tree
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commitdiff
2018-01-15
kiramt
JAL-2759 Updated absoluteToVisibleColumn doc (prev...
tree
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commitdiff
2018-01-15
kiramt
JAL-2759 Rename findColumnPosition and adjustForHiddenC...
tree
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commitdiff
2018-01-15
kiramt
JAL-2759 Renamed BoundedHiddenColsIterator to HiddenCol...
tree
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commitdiff
2018-01-15
kiramt
JAL-2759 Comments and renaming for has(Many)HiddenColum...
tree
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commitdiff
2018-01-15
kiramt
JAL-2759 Tidy up javadoc and naming in HiddenColumnsCur...
tree
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commitdiff
2018-01-15
kiramt
JAL-2759 Update to getHiddenBoundaryRight + unit test...
tree
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commitdiff
2018-01-15
kiramt
JAL-2759 Updates following review
tree
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commitdiff
2017-11-22
kiramt
JAL-2759 code tidy
tree
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commitdiff
2017-11-22
kiramt
JAL-2759 performance improvements to hideColumns
tree
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commitdiff
2017-11-22
kiramt
JAL-2759 performance tweaks
tree
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commitdiff
2017-11-22
kiramt
JAL-2759 HiddenColumns test polishing
tree
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commitdiff
2017-11-21
kiramt
JAL-2759 corrected old getVisibleBlocksIterator calls...
tree
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commitdiff
2017-11-21
kiramt
JAL-2759 Remove getVisibleBlocksIterator call
tree
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commitdiff
2017-11-21
kiramt
Merge branch 'develop' into feature/JAL-2759
tree
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commitdiff
2017-11-21
kiramt
JAL-2759 unit tests for VisibleContigsIterator
tree
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commitdiff
2017-11-20
kiramt
JAL-2759 cursor option for BoundedStartRegionIterator
tree
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commitdiff
2017-11-20
kiramt
JAL-2759 rationalise visible contigs iteration
tree
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commitdiff
2017-11-20
kiramt
JAL-2759 improvements to speed up synchronisation;...
tree
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commitdiff
2017-11-17
Jim Procter
JAL-2698 source code licencing
tree
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commitdiff
2017-11-17
Jim Procter
Merge branch 'doc/JAL-2494_JAL-2828_mergefindAnnotation...
tree
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commitdiff
2017-11-17
kiramt
JAL-2759 Move isVisible to use cursor
tree
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commitdiff
2017-11-17
kiramt
JAL-2759 tidy
tree
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commitdiff
2017-11-17
kiramt
JAL-2759 Update tests
tree
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commitdiff
2017-11-17
kiramt
JAL-2759 Convert reveal to use cursor
tree
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commitdiff
2017-11-17
kiramt
JAL-2759 HiddenColumnsCursor tests
tree
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commitdiff
2017-11-16
Jim Procter
Merge branch 'bug/JAL-2829deleteCharsWithGaps' into...
tree
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commitdiff
2017-11-13
gmungoc
JAL-2176 removed unused Sequence.index
tree
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commitdiff
2017-11-13
kiramt
JAL-2759 convert findColumnPosition to use cursor
tree
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commitdiff
2017-11-13
kiramt
JAL-2759 Converted getHiddenBoundaryLeft/Right to use...
tree
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commitdiff
2017-11-10
Jim Procter
JAL-2828 allow CalcId to match on String equivalence...
doc/JAL-2494_JAL-2828_mergefindAnnotation
tree
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commitdiff
2017-11-10
Jim Procter
JAL-2828 refactored duplicate code for searching lists...
tree
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commitdiff
2017-11-10
gmungoc
JAL-2829 fixes and unit tests
bug/JAL-2829deleteCharsWithGaps
tree
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commitdiff
2017-11-10
gmungoc
JAL-2562 updated findPosition javadoc to match behaviour
tree
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commitdiff
2017-11-09
kiramt
JAL-2759 make bounds correct for left scrolling with...
tree
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commitdiff
2017-11-08
kiramt
Merge branch 'develop' into feature/JAL-2759
tree
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commitdiff
2017-11-06
kiramt
JAL-2759 fix getHiddenOffset iterating backwards
tree
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commitdiff
2017-11-01
kiramt
JAL-2778 remove unnecessary code running in repaint
tree
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commitdiff
2017-10-26
Jim Procter
Merge branch 'feature/JAL-2488finalize' into develop
tree
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commitdiff
2017-10-23
Jim Procter
Merge branch 'bug/JAL-2682parseId' into develop
tree
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commitdiff
2017-10-13
kiramt
JAL-2759 hiddenColumns null check
tree
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commitdiff
2017-10-12
kiramt
JAL-2759 working first pass cursor
tree
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commitdiff
2017-10-11
gmungoc
JAL-2772 check array bounds for sequence access
bug/JAL-2772pdbArrayBounds
tree
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commitdiff
2017-10-11
gmungoc
Merge branch 'bug/JAL-2742' into develop
tree
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commitdiff
2017-10-10
kiramt
JAL-2759 Rearranged iterators
tree
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commitdiff
2017-10-09
gmungoc
JAL-2480 use interface type for sequenceFeatureStore
tree
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commitdiff
2017-10-09
kiramt
JAL-2674 iterator updates
tree
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commitdiff
2017-10-06
kiramt
JAL-2674 Last moves to iterators
tree
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commitdiff
2017-10-06
kiramt
JAL-2647 stashing
tree
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commitdiff
next