JAL-2778 remove unnecessary code running in repaint

diff --git a/src/jalview/datamodel/Alignment.java b/src/jalview/datamodel/Alignment.java
index 8c5e4ac..29e9dc8 100755 (executable)
--- a/src/jalview/datamodel/Alignment.java
+++ b/src/jalview/datamodel/Alignment.java
@@ -190,13 +190,12 @@ public class Alignment implements AlignmentI
   @Override
   public SequenceI getSequenceAt(int i)
   {
-    synchronized (sequences)
+    // don't need to synchronise here as sequences is a synchronizedList
+    if (i > -1 && i < sequences.size())
     {
-      if (i > -1 && i < sequences.size())
-      {
-        return sequences.get(i);
-      }
+      return sequences.get(i);
     }
+
     return null;
   }
 

diff --git a/src/jalview/gui/AnnotationPanel.java b/src/jalview/gui/AnnotationPanel.java
index 48e0483..abe92bb 100755 (executable)
--- a/src/jalview/gui/AnnotationPanel.java
+++ b/src/jalview/gui/AnnotationPanel.java
@@ -994,10 +994,8 @@ public class AnnotationPanel extends JPanel implements AwtRenderPanelI,
     int er = av.getRanges().getEndRes() + 1;
     int transX = 0;
 
-    long stime = System.currentTimeMillis();
     gg.copyArea(0, 0, imgWidth, getHeight(),
             -horizontal * av.getCharWidth(), 0);
-    long mtime = System.currentTimeMillis();
 
     if (horizontal > 0) // scrollbar pulled right, image to the left
     {
@@ -1014,17 +1012,9 @@ public class AnnotationPanel extends JPanel implements AwtRenderPanelI,
     drawComponent(gg, sr, er);
 
     gg.translate(-transX, 0);
-    long dtime = System.currentTimeMillis();
+
     fastPaint = true;
     repaint();
-    long rtime = System.currentTimeMillis();
-    if (debugRedraw)
-    {
-      System.err.println("Scroll:\t" + horizontal + "\tCopyArea:\t"
-              + (mtime - stime) + "\tDraw component:\t" + (dtime - mtime)
-              + "\tRepaint call:\t" + (rtime - dtime));
-    }
-
   }
 
   private volatile boolean lastImageGood = false;