| 2006-10-27 |
amwaterhouse | New padgaps works out number of gaps to insert, delete |
tree | commitdiff |
| 2006-10-26 |
amwaterhouse | No need to reduce length if inserting more gaps at... |
tree | commitdiff |
| 2006-10-26 |
amwaterhouse | Check if hiddenSequence has been deleted |
tree | commitdiff |
| 2006-10-25 |
amwaterhouse | We can delete sequence 0 |
tree | commitdiff |
| 2006-10-25 |
amwaterhouse | Check hiddenSequence before placing in tmp |
tree | commitdiff |
| 2006-10-25 |
amwaterhouse | Adjusts hiddenColumns correctly |
tree | commitdiff |
| 2006-10-24 |
amwaterhouse | changeCase, removeGaps moved to commands package |
tree | commitdiff |
| 2006-10-24 |
amwaterhouse | maxIdLength redundant, deleteCols, trimLeft, removeGaps... |
tree | commitdiff |
| 2006-10-24 |
amwaterhouse | Its historycvs remove jalview/datamodel/HistoryItem... |
tree | commitdiff |
| 2006-10-15 |
jprocter | fixed array out of bounds exception in copy constructor |
tree | commitdiff |
| 2006-10-12 |
amwaterhouse | Convenient function findEndRes |
tree | commitdiff |
| 2006-10-12 |
amwaterhouse | Overview may request index beyond alignment height |
tree | commitdiff |
| 2006-10-12 |
amwaterhouse | HiddenSequences now array, not hashtable |
tree | commitdiff |
| 2006-10-10 |
amwaterhouse | Remove growing hashtable |
tree | commitdiff |
| 2006-10-10 |
amwaterhouse | 1.1 compatible |
tree | commitdiff |
| 2006-10-10 |
amwaterhouse | aaIndex replaces aaHash |
tree | commitdiff |
| 2006-10-09 |
jprocter | fixed getCompactAlignment method to return proper cigar... |
tree | commitdiff |
| 2006-10-06 |
jprocter | javadoc |
tree | commitdiff |
| 2006-10-06 |
jprocter | new getVisibleContigs method mirrors the getVisibleCont... |
tree | commitdiff |
| 2006-10-06 |
amwaterhouse | AAFrequency optimized |
tree | commitdiff |
| 2006-09-07 |
jprocter | added copy consensus sequence to consensus annotation... |
tree | commitdiff |
| 2006-09-05 |
jprocter | getVisibleContigs() returns start and end positions... |
tree | commitdiff |
| 2006-09-05 |
jprocter | javadoc on contigs |
tree | commitdiff |
| 2006-08-29 |
amwaterhouse | SequenceMapping updated |
tree | commitdiff |
| 2006-08-22 |
jprocter | getSequenceStrings() bug fixed. |
tree | commitdiff |
| 2006-08-22 |
amwaterhouse | make 1.1 compatible |
tree | commitdiff |
| 2006-08-22 |
jprocter | hidden region recovery in JPred and new hidden region... |
tree | commitdiff |
| 2006-08-21 |
amwaterhouse | header updated |
tree | commitdiff |
| 2006-08-21 |
amwaterhouse | 1.1 compatible |
tree | commitdiff |
| 2006-08-21 |
jprocter | removeGaps method can record changes in alignment colum... |
tree | commitdiff |
| 2006-08-21 |
jprocter | fix for truncation of sequence associated annotation... |
tree | commitdiff |
| 2006-08-21 |
jprocter | added shiftList to record changes in alignment column... |
tree | commitdiff |
| 2006-08-21 |
jprocter | remove gaps method from AlignFrame.remove_gaps_actionPe... |
tree | commitdiff |
| 2006-08-20 |
jprocter | javadoc |
tree | commitdiff |
| 2006-08-18 |
amwaterhouse | dont remove all representative seqs on delete groups |
tree | commitdiff |
| 2006-08-18 |
amwaterhouse | remove all representative seqs on delete groups |
tree | commitdiff |
| 2006-08-17 |
jprocter | moved visible sub-alignment extraction and update from... |
tree | commitdiff |
| 2006-08-17 |
jprocter | javadoc |
tree | commitdiff |
| 2006-08-15 |
amwaterhouse | Select revealed seqs |
tree | commitdiff |
| 2006-08-15 |
amwaterhouse | Move features to dataset |
tree | commitdiff |
| 2006-08-14 |
amwaterhouse | findSequenceMatch returns multiple sequences |
tree | commitdiff |
| 2006-08-14 |
jprocter | fixed off by one bug in end sequence from getSubSequenc... |
tree | commitdiff |
| 2006-08-14 |
jprocter | end<start for empty sequences in Sequence[] from SeqCigar[] |
tree | commitdiff |
| 2006-08-14 |
amwaterhouse | elementAt instead of get for 1.1 compatibility |
tree | commitdiff |
| 2006-08-14 |
jprocter | fixing residue clip bug in MsaWSThread and adding minim... |
tree | commitdiff |
| 2006-08-13 |
jprocter | fixed end-residue bug and subjob panel names bug |
tree | commitdiff |
| 2006-08-11 |
jprocter | multiple web service jobs from visible blocks of an... |
tree | commitdiff |
| 2006-08-10 |
amwaterhouse | 1.1 compatible |
tree | commitdiff |
| 2006-08-09 |
jprocter | new SequenceI method for making a sub sequence from... |
tree | commitdiff |
| 2006-08-09 |
jprocter | alignment from seqCigars will correctly mark deleted... |
tree | commitdiff |
| 2006-08-09 |
jprocter | refactored hidden regions methods and made an Alignment... |
tree | commitdiff |
| 2006-08-09 |
amwaterhouse | Save links and scores and keyValues for features |
tree | commitdiff |
| 2006-08-08 |
amwaterhouse | Out by 1 error on show columns |
tree | commitdiff |
| 2006-08-07 |
amwaterhouse | 1.1 compatible |
tree | commitdiff |
| 2006-08-07 |
amwaterhouse | catch out of memory error for consensus when loading... |
tree | commitdiff |
| 2006-08-04 |
jprocter | recover original data for tree and pca as alignment... |
tree | commitdiff |
| 2006-07-28 |
amwaterhouse | Out by one error on reveal columns |
tree | commitdiff |
| 2006-07-28 |
amwaterhouse | 1.1 compatible |
tree | commitdiff |
| 2006-07-26 |
jprocter | Ignore list created |
tree | commitdiff |
| 2006-07-26 |
jprocter | Cigars for representing alignment view as used for... |
tree | commitdiff |
| 2006-07-26 |
jprocter | CigarBase class and derivatives. |
tree | commitdiff |
| 2006-07-26 |
jprocter | Implemented CIGAR representation of an Alignment view... |
tree | commitdiff |
| 2006-07-26 |
amwaterhouse | seqs[j] replaces current |
tree | commitdiff |
| 2006-07-26 |
amwaterhouse | Calculate overlap hidden regions |
tree | commitdiff |
| 2006-07-26 |
amwaterhouse | Remove left, right, empty cols work on hidden reps |
tree | commitdiff |
| 2006-07-25 |
amwaterhouse | ColumnSelection moved to datamodel |
tree | commitdiff |
| 2006-07-25 |
amwaterhouse | 1.1 compatible |
tree | commitdiff |
| 2006-07-25 |
amwaterhouse | Must be 1.1 compliant |
tree | commitdiff |
| 2006-07-25 |
amwaterhouse | Can have local file |
tree | commitdiff |
| 2006-07-25 |
amwaterhouse | If seq has a dataset, dont clear it |
tree | commitdiff |
| 2006-07-21 |
amwaterhouse | getFullAlignment |
tree | commitdiff |
| 2006-07-21 |
amwaterhouse | Remove note |
tree | commitdiff |
| 2006-07-21 |
amwaterhouse | DBRef is an array, not vector |
tree | commitdiff |
| 2006-07-19 |
amwaterhouse | datasetSeq bug |
tree | commitdiff |
| 2006-07-18 |
amwaterhouse | getSelectionAsNewSequence added |
tree | commitdiff |
| 2006-07-18 |
amwaterhouse | Takes a string, not sequence |
tree | commitdiff |
| 2006-07-18 |
jprocter | use of GapChars |
tree | commitdiff |
| 2006-07-13 |
amwaterhouse | Sequence is private |
tree | commitdiff |
| 2006-07-12 |
amwaterhouse | sequences are private in SequenceGroup |
tree | commitdiff |
| 2006-07-07 |
amwaterhouse | Redundant Remove Redundancy Removed |
tree | commitdiff |
| 2006-07-07 |
amwaterhouse | Checks on drawing characters and if sequence ref has... |
tree | commitdiff |
| 2006-06-15 |
amwaterhouse | Maintain status and position only for uniprot parsing |
tree | commitdiff |
| 2006-06-14 |
amwaterhouse | Status is now in otherData of feature |
tree | commitdiff |
| 2006-06-09 |
amwaterhouse | otherDetails |
tree | commitdiff |
| 2006-06-09 |
amwaterhouse | Remove getsfarray |
tree | commitdiff |
| 2006-06-09 |
amwaterhouse | getSequencesArray |
tree | commitdiff |
| 2006-06-08 |
jprocter | DBRefEntry.source enum type |
tree | commitdiff |
| 2006-06-07 |
amwaterhouse | Remove position, add score and links |
tree | commitdiff |
| 2006-05-15 |
amwaterhouse | All or nothing drawing display char |
tree | commitdiff |
| 2006-05-11 |
amwaterhouse | Maintain numbering if remove left is undone |
tree | commitdiff |
| 2006-05-11 |
amwaterhouse | Recently loaded files, urls, append sequences to Alignment |
tree | commitdiff |
| 2006-05-10 |
amwaterhouse | Correction for sequences with start not equal to 1 |
tree | commitdiff |
| 2006-05-10 |
amwaterhouse | Create sequence mapping for annotations |
tree | commitdiff |
| 2006-05-10 |
amwaterhouse | addAnnotation with seqRef |
tree | commitdiff |
| 2006-05-10 |
amwaterhouse | Changes case to end of alignment |
tree | commitdiff |
| 2006-05-02 |
amwaterhouse | Toggle case added to popup menu |
tree | commitdiff |
| 2006-04-28 |
amwaterhouse | Make sure end is less than sequence width |
tree | commitdiff |
| 2006-04-28 |
amwaterhouse | changeCase |
tree | commitdiff |
| 2006-04-10 |
amwaterhouse | Fixed protein desc bug |
tree | commitdiff |
| 2006-04-04 |
amwaterhouse | Pad gaps removes excess gaps |
tree | commitdiff |
| next |
git://source.jalview.org / jalview.git / history