git://source.jalview.org
/
jalview.git
/ history
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
first ⋅ prev ⋅
next
Must repaint whole alignPanel
[jalview.git]
/
src
/
jalview
/
datamodel
/
2006-10-10
amwaterhouse
1.1 compatible
tree
|
commitdiff
2006-10-10
amwaterhouse
aaIndex replaces aaHash
tree
|
commitdiff
2006-10-09
jprocter
fixed getCompactAlignment method to return proper cigar...
tree
|
commitdiff
2006-10-06
jprocter
javadoc
tree
|
commitdiff
2006-10-06
jprocter
new getVisibleContigs method mirrors the getVisibleCont...
tree
|
commitdiff
2006-10-06
amwaterhouse
AAFrequency optimized
tree
|
commitdiff
2006-09-07
jprocter
added copy consensus sequence to consensus annotation...
tree
|
commitdiff
2006-09-05
jprocter
getVisibleContigs() returns start and end positions...
tree
|
commitdiff
2006-09-05
jprocter
javadoc on contigs
tree
|
commitdiff
2006-08-29
amwaterhouse
SequenceMapping updated
tree
|
commitdiff
2006-08-22
jprocter
getSequenceStrings() bug fixed.
tree
|
commitdiff
2006-08-22
amwaterhouse
make 1.1 compatible
tree
|
commitdiff
2006-08-22
jprocter
hidden region recovery in JPred and new hidden region...
tree
|
commitdiff
2006-08-21
amwaterhouse
header updated
tree
|
commitdiff
2006-08-21
amwaterhouse
1.1 compatible
tree
|
commitdiff
2006-08-21
jprocter
removeGaps method can record changes in alignment colum...
tree
|
commitdiff
2006-08-21
jprocter
fix for truncation of sequence associated annotation...
tree
|
commitdiff
2006-08-21
jprocter
added shiftList to record changes in alignment column...
tree
|
commitdiff
2006-08-21
jprocter
remove gaps method from AlignFrame.remove_gaps_actionPe...
tree
|
commitdiff
2006-08-20
jprocter
javadoc
tree
|
commitdiff
2006-08-18
amwaterhouse
dont remove all representative seqs on delete groups
tree
|
commitdiff
2006-08-18
amwaterhouse
remove all representative seqs on delete groups
tree
|
commitdiff
2006-08-17
jprocter
moved visible sub-alignment extraction and update from...
tree
|
commitdiff
2006-08-17
jprocter
javadoc
tree
|
commitdiff
2006-08-15
amwaterhouse
Select revealed seqs
tree
|
commitdiff
2006-08-15
amwaterhouse
Move features to dataset
tree
|
commitdiff
2006-08-14
amwaterhouse
findSequenceMatch returns multiple sequences
tree
|
commitdiff
2006-08-14
jprocter
fixed off by one bug in end sequence from getSubSequenc...
tree
|
commitdiff
2006-08-14
jprocter
end<start for empty sequences in Sequence[] from SeqCigar[]
tree
|
commitdiff
2006-08-14
amwaterhouse
elementAt instead of get for 1.1 compatibility
tree
|
commitdiff
2006-08-14
jprocter
fixing residue clip bug in MsaWSThread and adding minim...
tree
|
commitdiff
2006-08-13
jprocter
fixed end-residue bug and subjob panel names bug
tree
|
commitdiff
2006-08-11
jprocter
multiple web service jobs from visible blocks of an...
tree
|
commitdiff
2006-08-10
amwaterhouse
1.1 compatible
tree
|
commitdiff
2006-08-09
jprocter
new SequenceI method for making a sub sequence from...
tree
|
commitdiff
2006-08-09
jprocter
alignment from seqCigars will correctly mark deleted...
tree
|
commitdiff
2006-08-09
jprocter
refactored hidden regions methods and made an Alignment...
tree
|
commitdiff
2006-08-09
amwaterhouse
Save links and scores and keyValues for features
tree
|
commitdiff
2006-08-08
amwaterhouse
Out by 1 error on show columns
tree
|
commitdiff
2006-08-07
amwaterhouse
1.1 compatible
tree
|
commitdiff
2006-08-07
amwaterhouse
catch out of memory error for consensus when loading...
tree
|
commitdiff
2006-08-04
jprocter
recover original data for tree and pca as alignment...
tree
|
commitdiff
2006-07-28
amwaterhouse
Out by one error on reveal columns
tree
|
commitdiff
2006-07-28
amwaterhouse
1.1 compatible
tree
|
commitdiff
2006-07-26
jprocter
Ignore list created
tree
|
commitdiff
2006-07-26
jprocter
Cigars for representing alignment view as used for...
tree
|
commitdiff
2006-07-26
jprocter
CigarBase class and derivatives.
tree
|
commitdiff
2006-07-26
jprocter
Implemented CIGAR representation of an Alignment view...
tree
|
commitdiff
2006-07-26
amwaterhouse
seqs[j] replaces current
tree
|
commitdiff
2006-07-26
amwaterhouse
Calculate overlap hidden regions
tree
|
commitdiff
2006-07-26
amwaterhouse
Remove left, right, empty cols work on hidden reps
tree
|
commitdiff
2006-07-25
amwaterhouse
ColumnSelection moved to datamodel
tree
|
commitdiff
2006-07-25
amwaterhouse
1.1 compatible
tree
|
commitdiff
2006-07-25
amwaterhouse
Must be 1.1 compliant
tree
|
commitdiff
2006-07-25
amwaterhouse
Can have local file
tree
|
commitdiff
2006-07-25
amwaterhouse
If seq has a dataset, dont clear it
tree
|
commitdiff
2006-07-21
amwaterhouse
getFullAlignment
tree
|
commitdiff
2006-07-21
amwaterhouse
Remove note
tree
|
commitdiff
2006-07-21
amwaterhouse
DBRef is an array, not vector
tree
|
commitdiff
2006-07-19
amwaterhouse
datasetSeq bug
tree
|
commitdiff
2006-07-18
amwaterhouse
getSelectionAsNewSequence added
tree
|
commitdiff
2006-07-18
amwaterhouse
Takes a string, not sequence
tree
|
commitdiff
2006-07-18
jprocter
use of GapChars
tree
|
commitdiff
2006-07-13
amwaterhouse
Sequence is private
tree
|
commitdiff
2006-07-12
amwaterhouse
sequences are private in SequenceGroup
tree
|
commitdiff
2006-07-07
amwaterhouse
Redundant Remove Redundancy Removed
tree
|
commitdiff
2006-07-07
amwaterhouse
Checks on drawing characters and if sequence ref has...
tree
|
commitdiff
2006-06-15
amwaterhouse
Maintain status and position only for uniprot parsing
tree
|
commitdiff
2006-06-14
amwaterhouse
Status is now in otherData of feature
tree
|
commitdiff
2006-06-09
amwaterhouse
otherDetails
tree
|
commitdiff
2006-06-09
amwaterhouse
Remove getsfarray
tree
|
commitdiff
2006-06-09
amwaterhouse
getSequencesArray
tree
|
commitdiff
2006-06-08
jprocter
DBRefEntry.source enum type
tree
|
commitdiff
2006-06-07
amwaterhouse
Remove position, add score and links
tree
|
commitdiff
2006-05-15
amwaterhouse
All or nothing drawing display char
tree
|
commitdiff
2006-05-11
amwaterhouse
Maintain numbering if remove left is undone
tree
|
commitdiff
2006-05-11
amwaterhouse
Recently loaded files, urls, append sequences to Alignment
tree
|
commitdiff
2006-05-10
amwaterhouse
Correction for sequences with start not equal to 1
tree
|
commitdiff
2006-05-10
amwaterhouse
Create sequence mapping for annotations
tree
|
commitdiff
2006-05-10
amwaterhouse
addAnnotation with seqRef
tree
|
commitdiff
2006-05-10
amwaterhouse
Changes case to end of alignment
tree
|
commitdiff
2006-05-02
amwaterhouse
Toggle case added to popup menu
tree
|
commitdiff
2006-04-28
amwaterhouse
Make sure end is less than sequence width
tree
|
commitdiff
2006-04-28
amwaterhouse
changeCase
tree
|
commitdiff
2006-04-10
amwaterhouse
Fixed protein desc bug
tree
|
commitdiff
2006-04-04
amwaterhouse
Pad gaps removes excess gaps
tree
|
commitdiff
2006-03-24
amwaterhouse
Add check if sequence already exists
tree
|
commitdiff
2006-03-24
amwaterhouse
FeaturesGroup added to constructor
tree
|
commitdiff
2006-03-16
amwaterhouse
Gethidden sequences
tree
|
commitdiff
2006-03-16
amwaterhouse
HiddenSequence methods
tree
|
commitdiff
2006-03-16
amwaterhouse
getHiddenSequences
tree
|
commitdiff
2006-03-16
amwaterhouse
Keeps a record of hidden sequences
tree
|
commitdiff
2006-02-24
amwaterhouse
Make variable public for speed of rendering
tree
|
commitdiff
2006-02-24
amwaterhouse
Features are now an array, not vector
tree
|
commitdiff
2006-02-24
amwaterhouse
Typo
tree
|
commitdiff
2006-02-15
amwaterhouse
FeatureGroups added
tree
|
commitdiff
2006-02-15
amwaterhouse
Removed SuperGroup
tree
|
commitdiff
2006-02-15
amwaterhouse
No longer used
tree
|
commitdiff
2006-02-09
amwaterhouse
New implementation for holding search results
tree
|
commitdiff
2006-02-03
amwaterhouse
has ref to annotation
tree
|
commitdiff
next