JAL-3210 Add a local.properties ECLIPSE_IDE_DEVELOPER=true to prevent headless eclips...
[jalview.git] / src / jalview / datamodel /
2017-11-06 kiramtJAL-2759 fix getHiddenOffset iterating backwards
2017-11-03 gmungocJAL-2808 JAL-2069 record feature attributes description...
2017-11-02 gmungocJAL-2808 spike updated with latest
2017-11-02 gmungocJAL-2808 new Filters tab in Feature Settings
2017-11-02 gmungocJAL-2808 convenience method to get attribute as String
2017-11-01 kiramtJAL-2778 remove unnecessary code running in repaint
2017-10-30 gmungocJAL-2792 Javadoc updates
2017-10-30 gmungocJAL-2808 remember attribute keys by feature type
2017-10-27 gmungocJAL-1793 spike branch updated to latest
2017-10-27 gmungocJAL-2792 include source in copy constructor; null point...
2017-10-27 gmungocMerge branch 'develop' into features/JAL-1793VCF
2017-10-27 gmungocJAL-2792 capture feature metadata and render in Feature...
2017-10-26 Jim ProcterMerge branch 'feature/JAL-2488finalize' into develop
2017-10-26 gmungocMerge branch 'develop' into features/JAL-1793VCF
2017-10-26 gmungocJAL-2792 html table for Feature Details report
2017-10-24 gmungocJAL-2738 tidy Javadoc, remove debug logging
2017-10-24 gmungocJAL-2738 update spike branch with latest
2017-10-24 gmungocMerge branch 'develop' into features/JAL-1793VCF; lambd...
2017-10-23 Jim ProcterMerge branch 'bug/JAL-2682parseId' into develop
2017-10-20 gmungocPush 1793 latest to spike branch
2017-10-19 gmungocJAL-2755 add missing Javadoc
2017-10-13 kiramtJAL-2759 hiddenColumns null check
2017-10-12 kiramtJAL-2759 working first pass cursor
2017-10-11 gmungocJAL-2772 check array bounds for sequence access bug/JAL-2772pdbArrayBounds
2017-10-11 gmungocMerge branch 'bug/JAL-2742' into develop
2017-10-10 kiramtJAL-2759 Rearranged iterators
2017-10-10 gmungocMerge branch 'develop' into features/JAL-1793VCF
2017-10-09 gmungocJAL-2480 use interface type for sequenceFeatureStore
2017-10-09 kiramtJAL-2674 iterator updates
2017-10-06 kiramtJAL-2674 Last moves to iterators
2017-10-06 kiramtJAL-2647 stashing
2017-10-05 kiramtJAL-2674 Removed a stray Vector
2017-10-05 gmungocJAL-2738 update spikes/mungo
2017-10-05 kiramtJAL-2674 Rationalising iterators and retesting
2017-10-05 gmungocJAL-2744 add score to feature details report, descripti...
2017-10-04 kiramtJAL-2674 Adjustments to hideColumns
2017-10-04 kiramtJAL-2674 more adjustments to locateVisibleBoundsOfSequence
2017-10-04 kiramtJAL-2674 Simplify locateVisibleBoundsOfSequence
2017-10-04 kiramtJAL-2674 tidy
2017-10-03 kiramtJAL-2674 testing
2017-10-03 kiramtJAL-2674 working refactor of drawPanel iteration
2017-10-03 gmungocJAL-2738 copy to spikes/mungo
2017-10-03 kjvdheideAdded checks for X mouse coordinate being >= 0 and...
2017-10-03 kiramtJAL-2674 2nd attempt to refactor seqcanvas drawing...
2017-10-02 kiramtJAL-2674 iterator for visible blocks with absolute...
2017-10-02 kjvdhAdded check for negative start columns
2017-09-29 gmungocJAL-2744 indent CSQ lines to catch the eye
2017-09-29 kiramtJAL-2674 Tidies
2017-09-29 kiramtJAL-2674 finish with iterators for now
2017-09-29 kiramtJAL=2674 Removed getHiddenColumnsCopy
2017-09-29 kiramtJAL-2674 reverted attempt at visible regions iterator
2017-09-28 kiramtJAL-2647 more iterators
2017-09-28 gmungocJAL-1796 GeneLociI as distinguished DBRefEntry
2017-09-28 gmungocJAL-2744 simple Feature Details report from Popup menu
2017-09-27 kiramtJAL-2674 Removing most calls to getHiddenColumnsCopy
2017-09-26 kiramtJAL-2674 tidied up CigarArray
2017-09-26 kiramtMerge remote-tracking branch 'origin/bug/JAL-2742'...
2017-09-26 kiramtJAL-2742 fixed
2017-09-26 kiramtJAL-2674 Changed CigarArray constructor to use HiddenCo...
2017-09-26 kiramtJAL-2674 Changes to pasting
2017-09-26 kiramtJAL-2674 HiddenColumns interface tidies
2017-09-26 kiramtJAL-2647 Added iterators and associated tests and bench...
2017-09-26 gmungocJAL-2738 promote setGeneLoci to SequenceI!
2017-09-25 gmungocJAL-2738 getGeneLoci promoted to SequenceI
2017-09-25 gmungocMerge branch 'develop' into features/JAL-1793VCF
2017-09-25 gmungocJAL-2525 return no features if none matches ontology...
2017-09-22 gmungocJAL-2738 correct handling of reverse strand genes
2017-09-22 kiramtJAL-2674 add bounds to findHiddenRegionPositions
2017-09-21 kiramtJAL-2674 Rewrote propagateInsertions
2017-09-21 gmungocJAL-2738 GeneLoci holds mapping of sequence to chromosome
2017-09-20 kiramtJAL-2674 fix up interface of locateVisibleBoundsOfSequence
2017-09-14 gmungocJAL-2541 save/Undo only 'diffs' for features with Cut...
2017-09-14 gmungocJAL-2541 length check in deleteChars (redoing lost...
2017-09-14 gmungocJAL-2541 working Cut/Undo with feature relocation
2017-09-14 gmungocJAL-2541 revised cut with features (work in progress)
2017-09-05 Jim ProcterMerge branch 'master' into portforward/JAL-2675_2102b1t...
2017-09-04 Jim ProcterJAL-2675 source license
2017-09-03 Jim ProcterMerge branch 'bug/JAL-2665-2.10.2b' into documentation... bug/JAL-2673_mergewithproblem
2017-09-03 Jim ProcterMerge branch 'documentation/JAL-2675_release2102b1...
2017-09-03 Jim ProcterMerge branch 'feature/JAL-2527' into documentation...
2017-09-01 gmungocJAL-2488 remove finalize methods
2017-08-30 kiramtMerge branch 'feature/JAL-2664' into feature/JAL-2527
2017-08-29 kiramtJAL-2664 Updates following review feature/JAL-2664
2017-08-28 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-08-28 kiramtMerge remote-tracking branch 'origin/releases/Release_2...
2017-08-28 kiramtJAL-2665 Changes for review comments; printing with... bug/JAL-2665
2017-08-23 gmungocJAL-2682 non-regex sequence id parsing, and tests added
2017-08-22 Jim ProcterJAL-1551 formatting
2017-08-21 gmungocMerge branch 'develop' into features/JAL-2446NCList features/JAL-2446NCList
2017-08-16 Jim ProcterJAL-2418 source formatting
2017-08-16 kiramtJAL-2665 Added hidden columns group selection - almost...
2017-08-16 kiramtJAL-2665 Added sequence group update event.
2017-08-09 gmungocJAL-2480 inline one method, improve comments
2017-08-01 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-07-24 gmungocspike branch updated from latest features/JAL-2446
2017-07-22 kiramtMerge branch 'develop' into feature/JAL-2611
2017-07-19 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-07-13 kiramtJAL-2613 Unit tests and a fix. Phew.
2017-07-05 gmungocJAL-147 additions to unit test, check for negative...
2017-07-05 gmungocJAL-147 prevent overview box move up over hidden first...
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