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JAL-2799 fixed selections not carrying over to tabs with invokeLater
[jalview.git]
/
src
/
jalview
/
ext
/
archaeopteryx
/
2017-11-22
kjvdheide
JAL-2799 fixed selections not carrying over to tabs...
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2017-11-21
kjvdheide
JAL-281 added string label for loading from database
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2017-11-20
kjvdheide
JAL-2799 JAL-2805 JAL-281 multiple trees can now be...
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2017-11-20
kjvdheide
JAL-281 option pane with error handling for selecting...
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2017-11-17
kjvdheide
JAL-2805 code refactor (actionPerformed cleaned up...
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2017-11-17
kjvdheide
JAL-2805 reorganized code, tree building goes through...
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2017-11-17
kjvdheide
Merge branch 'kjvdh/features/PhylogenyViewer' of
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2017-11-17
kjvdheide
JAL-2805 couple of method name changes
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2017-11-16
kjvdheide
JAL-2805 expanded tree and treenode interfaces
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2017-11-16
kjvdheide
JAL-2805 loads of file reorganizing, interfaces expanded
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2017-11-14
kjvdheide
JAL-2795 added duplication check when calculated nodes...
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2017-11-14
kjvdheide
JAL-2805 added getters for hashmaps filled with associa...
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2017-11-14
kjvdheide
JAL-2805 added static method for logging duplications...
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2017-11-14
kjvdheide
JAL-2805 more sensible interface method params
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2017-11-14
kjvdheide
JAL-2805 finished up interface comments
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2017-11-14
kjvdheide
JAL-2805 re-enabled one2many checks
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2017-11-14
kjvdheide
JAL-2805 interface comments, progress on associating...
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2017-11-13
kjvdheide
JAL-2805 interface comments
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2017-11-13
kjvdheide
JAL-2805 some more name changes
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2017-11-13
kjvdheide
JAL-2805 more name changes for clarity
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2017-11-13
kjvdheide
JAL-2805 name changed of interfaces for consistency
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2017-11-13
kjvdheide
JAL-2805 Jalview sequence binding interface expanded
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2017-11-13
kjvdheide
JAL-2805 Added tree building interface
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2017-11-13
kjvdheide
JAL-2805 name change
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2017-11-13
kjvdheide
JAL-2805 deleted old Aptx class for loading just Newick...
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commitdiff
2017-11-13
kjvdheide
JAL-2805 more interface work
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2017-11-13
kjvdheide
JAL-2794 removed unused interface
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2017-11-13
kjvdheide
JAL-2805 undid accidental double (buggy) binding, more...
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2017-11-13
kjvdheide
JAL-2805 First try at loading tree through Forester...
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commitdiff
2017-11-10
kjvdheide
JAL-2794 reorganized node select code, added subtree...
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commitdiff
2017-11-10
kjvdheide
JAL-2794 comments comments comments
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2017-11-10
kjvdheide
JAL-2794 most method parameters/class variables made...
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2017-11-10
kjvdheide
JAL-2794 comments, selected node now doesn't have to...
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2017-11-09
kjvdheide
JAL-2794 PaintRefresher support, Aptx node selection...
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2017-11-09
kjvdheide
JAL-2794 interface comment
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2017-11-09
kjvdheide
JAL-2794 Made HashMap with Nodes as keys and sequences...
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2017-11-08
kjvdheide
JAL-2794 Aptx instances get their parent alignment...
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commitdiff
2017-11-08
kjvdheide
JAL-2794 Cleaning up tree conversion, sequences are...
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commitdiff
2017-11-08
kjvdheide
JAL-2794 Interface name change (oops)
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2017-11-08
kjvdheide
JAL-2794 made JalviewTreeViewerBinding an interface
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2017-11-03
kjvdheide
JAL-2794 created tree viewer binding class
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2017-11-03
kjvdheide
JAL-2795 bunch of cleanup and comments
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2017-11-02
kjvdheide
JAL-2795 added back test loop for Aptx tree naming...
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2017-11-02
kjvdheide
JAL-2795 Reverted code changes needed to cluster from...
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2017-11-02
kjvdheide
JAL-2795 Forester now NJ-clusters the DistanceMatrix...
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2017-11-02
kjvdheide
JAL-2795 moved matrix conversion to the ForesterMatrix...
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2017-11-01
kjvdheide
JAL-2795 Sequence[] references now as SequenceI[] ...
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2017-10-30
kjvdheide
JAL-2795 rebuilt MatrixConverter to be purely static
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2017-10-28
kjvdheide
JAL-2795 moved ForesterMatrix to ext.forester
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2017-10-28
kjvdheide
JAL-2795 Added get and set values to the converted...
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2017-10-27
kjvdheide
JAL-2795 start of Jalview's Matrix conversion
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2017-10-26
kjvdheide
Start of matrix converter
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2017-10-26
kjvdheide
Added proper title to aptx trees
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2017-10-26
kjvdheide
Added TreeBuilder as parameter to the converter constructor
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2017-10-26
kjvdheide
Name changed of aptx treebuilder to treeconverter
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2017-10-25
kjvdheide
finished up tests for trees made from jalview data
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2017-10-24
kjvdheide
Tests for Aptx tree created from a Phylogeny object...
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2017-10-13
kjvdheide
basic tests for Aptx
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2017-10-13
kjvdheide
ArchaeopteryxInit is now static
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2017-10-13
kjvdheide
simplified aptx frame creation code
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2017-10-13
kjvdheide
Slight Aptx colour change
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2017-10-12
kjvdheide
Custom aptx configuration added
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2017-10-12
kjvdheide
moved Aptx creation from CalculationChooser to separate...
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2017-10-12
kjvdheide
Created test class for Archaeopteryx tree viewing
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2017-10-11
kjvdheide
forester as submodule with InternalFrame + start of...
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commitdiff
2017-10-11
kjvdheide
just a comment
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2017-10-11
kjvdheide
Added tree building (without distances yet)
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2017-10-10
kjvdheide
Start of programmatically creating Aptx trees
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2017-10-09
kjvdheide
Start of creating tree nodes for Aptx
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2017-10-09
kjvdheide
Fully separated tree GUI from calculation
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2017-10-07
kjvdheide
Renaming
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2017-10-06
kjvdheide
Start of creating the objects Archaeopteryx needs
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2017-10-05
kjvdheide
Blank interfaces added
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2017-10-03
kjvdheide
Proper copyright dating added
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2017-10-03
kjvdheide
Copyright test
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2017-09-29
kjvdheide
Begin separation of GUI and tree calculation logic
origin/spikes/koen
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