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JAL-2805 added nexus specific parser settings
[jalview.git] / src / jalview / ext / forester /
2018-01-09 kjvdheideJAL-2805 added nexus specific parser settings tree | commitdiff
2018-01-09 kjvdheideJAL-2805 broke off the phylogenetic file formats into... tree | commitdiff
2018-01-09 kjvdheideJAL-2805 parser is now File based (instead of FileParse... tree | commitdiff
2018-01-09 kjvdheideJAL-2805 added forester --> jalview sequence converter tree | commitdiff
2018-01-09 kjvdheideJAL-1953 moved DataConversions to Forester package tree | commitdiff
2018-01-05 kjvdheideJAL-281 ForesterParser now extends from AlignFile tree | commitdiff
2018-01-04 kjvdheideJAL-281 ForesterParser factory methods added tree | commitdiff
2017-12-20 kjvdheideJAL-281 moved utility methods to .io package tree | commitdiff
2017-12-20 kjvdheideJAL-281 split up TreeParser into separate format parsers tree | commitdiff
2017-12-19 kjvdheideJAL-281 created Nexus and PhyloXML parser classes tree | commitdiff
2017-12-19 kjvdheideJAL-281 cleared out useless tree parser class tree | commitdiff
2017-12-14 kjvdheideJAL-1953 more progress on interfaces, jalview binding... tree | commitdiff
2017-12-12 kjvdheideJAL-2877 disabled Jalview's own viewer for testing spikes/thomas tree | commitdiff
2017-12-11 kjvdheideJAL-2877 disabled Jalview's default tree viewer when... tree | commitdiff
2017-12-11 kjvdheideJAL-1953 start on making everything interface based tree | commitdiff
2017-11-26 kjvdheideJAL-2847 first rough attempt at loading in via database ID tree | commitdiff
2017-11-24 kjvdheideJAL-2799 ALL trees are now loaded in as separate Aptx... tree | commitdiff
2017-11-22 kjvdheideJAL-2847 small things, filled in actionperformeds tree | commitdiff
2017-11-20 kjvdheideJAL-281 option pane with error handling for selecting... tree | commitdiff
2017-11-17 kjvdheideJAL-2805 code refactor (actionPerformed cleaned up... tree | commitdiff
2017-11-17 kjvdheideJAL-2805 reorganized code, tree building goes through... tree | commitdiff
2017-11-17 kjvdheideJAL-2795 removed unneeded distancematrix length/width... tree | commitdiff
2017-11-17 kjvdheideMerge branch 'kjvdh/features/PhylogenyViewer' of tree | commitdiff
2017-11-17 kjvdheideJAL-2805 couple of method name changes tree | commitdiff
2017-11-16 kjvdheideJAL-2805 loads of file reorganizing, interfaces expanded tree | commitdiff
2017-11-15 kjvdheideJAL-2805 functional binding on loading associated trees tree | commitdiff
2017-11-14 kjvdheideJAL-2805 viewport is passed along to the tree parser tree | commitdiff
2017-11-14 kjvdheideJAL-2805 more sensible interface method params tree | commitdiff
2017-11-14 kjvdheideJAL-2805 finished up interface comments tree | commitdiff
2017-11-13 kjvdheideJAL-2805 interface comments tree | commitdiff
2017-11-13 kjvdheideJAL-2805 some more name changes tree | commitdiff
2017-11-13 kjvdheideJAL-2805 more interface name changing tree | commitdiff
2017-11-13 kjvdheideJAL-2805 TreeParser now interface based tree | commitdiff
2017-11-13 kjvdheideJAL-2805 undid accidental double (buggy) binding, more... tree | commitdiff
2017-11-13 kjvdheideJAL-2805 warning messages added if Forester detects... tree | commitdiff
2017-11-13 kjvdheideJAL-2805 First try at loading tree through Forester... tree | commitdiff
2017-11-10 kjvdheideJAL-2794 most method parameters/class variables made... tree | commitdiff
2017-11-08 kjvdheideJAL-2795 created static class for forester conversions tree | commitdiff
2017-11-02 kjvdheideJAL-2795 moved matrix conversion to the ForesterMatrix... tree | commitdiff
2017-11-01 kjvdheideJAL-2795 Sequence[] references now as SequenceI[] ... tree | commitdiff
2017-11-01 kjvdheideJAL-2795 removed sequences[] class variable, more comments tree | commitdiff
2017-10-30 kjvdheideJAL-2795 added error catching for invalid identifier tree | commitdiff
2017-10-30 kjvdheideJAL-2795 changed getting index of identifier to Stream... tree | commitdiff
2017-10-30 kjvdheideJAL-2795 rebuilt MatrixConverter to be purely static tree | commitdiff
2017-10-30 kjvdheideJAL-2795 finalized method arguments; commited forester... tree | commitdiff
2017-10-30 kjvdheideJAL-2795 removed unneeded for loop (woops) and initiali... tree | commitdiff
2017-10-30 kjvdheideJAL-2795 implemented getting/setting identifiers tree | commitdiff
2017-10-30 kjvdheideJAL-2795 added comments links from ForesterMatrix to... tree | commitdiff
2017-10-30 kjvdheideJAL-2795 removed now unneeded values variable in Forest... tree | commitdiff
2017-10-30 kjvdheideJAL-2795 add get for all matrix values to MatrixI ... tree | commitdiff
2017-10-30 kjvdheideJAL-2795 foresterMatrix now stores distance values... tree | commitdiff
2017-10-29 kjvdheideJAL-2795 more matrix implementations tree | commitdiff
2017-10-28 kjvdheideJAL-2795 moved ForesterMatrix to ext.forester tree | commitdiff