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JAL-1953 more progress on interfaces, jalview binding still problematic
[jalview.git]
/
src
/
jalview
/
ext
/
forester
/
2017-12-14
kjvdheide
JAL-1953 more progress on interfaces, jalview binding...
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commitdiff
2017-12-11
kjvdheide
JAL-1953 start on making everything interface based
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commitdiff
2017-11-26
kjvdheide
JAL-2847 first rough attempt at loading in via database ID
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2017-11-24
kjvdheide
JAL-2799 ALL trees are now loaded in as separate Aptx...
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2017-11-22
kjvdheide
JAL-2847 small things, filled in actionperformeds
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commitdiff
2017-11-20
kjvdheide
JAL-281 option pane with error handling for selecting...
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commitdiff
2017-11-17
kjvdheide
JAL-2805 code refactor (actionPerformed cleaned up...
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commitdiff
2017-11-17
kjvdheide
JAL-2805 reorganized code, tree building goes through...
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commitdiff
2017-11-17
kjvdheide
JAL-2795 removed unneeded distancematrix length/width...
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commitdiff
2017-11-17
kjvdheide
Merge branch 'kjvdh/features/PhylogenyViewer' of
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commitdiff
2017-11-17
kjvdheide
JAL-2805 couple of method name changes
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commitdiff
2017-11-16
kjvdheide
JAL-2805 loads of file reorganizing, interfaces expanded
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2017-11-15
kjvdheide
JAL-2805 functional binding on loading associated trees
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2017-11-14
kjvdheide
JAL-2805 viewport is passed along to the tree parser
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2017-11-14
kjvdheide
JAL-2805 more sensible interface method params
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commitdiff
2017-11-14
kjvdheide
JAL-2805 finished up interface comments
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2017-11-13
kjvdheide
JAL-2805 interface comments
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commitdiff
2017-11-13
kjvdheide
JAL-2805 some more name changes
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commitdiff
2017-11-13
kjvdheide
JAL-2805 more interface name changing
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2017-11-13
kjvdheide
JAL-2805 TreeParser now interface based
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2017-11-13
kjvdheide
JAL-2805 undid accidental double (buggy) binding, more...
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2017-11-13
kjvdheide
JAL-2805 warning messages added if Forester detects...
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2017-11-13
kjvdheide
JAL-2805 First try at loading tree through Forester...
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commitdiff
2017-11-10
kjvdheide
JAL-2794 most method parameters/class variables made...
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2017-11-08
kjvdheide
JAL-2795 created static class for forester conversions
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2017-11-02
kjvdheide
JAL-2795 moved matrix conversion to the ForesterMatrix...
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commitdiff
2017-11-01
kjvdheide
JAL-2795 Sequence[] references now as SequenceI[] ...
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2017-11-01
kjvdheide
JAL-2795 removed sequences[] class variable, more comments
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commitdiff
2017-10-30
kjvdheide
JAL-2795 added error catching for invalid identifier
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commitdiff
2017-10-30
kjvdheide
JAL-2795 changed getting index of identifier to Stream...
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2017-10-30
kjvdheide
JAL-2795 rebuilt MatrixConverter to be purely static
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2017-10-30
kjvdheide
JAL-2795 finalized method arguments; commited forester...
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2017-10-30
kjvdheide
JAL-2795 removed unneeded for loop (woops) and initiali...
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2017-10-30
kjvdheide
JAL-2795 implemented getting/setting identifiers
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2017-10-30
kjvdheide
JAL-2795 added comments links from ForesterMatrix to...
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2017-10-30
kjvdheide
JAL-2795 removed now unneeded values variable in Forest...
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2017-10-30
kjvdheide
JAL-2795 add get for all matrix values to MatrixI ...
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2017-10-30
kjvdheide
JAL-2795 foresterMatrix now stores distance values...
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2017-10-29
kjvdheide
JAL-2795 more matrix implementations
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2017-10-28
kjvdheide
JAL-2795 moved ForesterMatrix to ext.forester
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