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[jalview.git] / src / jalview / ext / rbvi / chimera / JalviewChimeraBinding.java

2017-08-16	Jim Procter	JAL-2418 source formatting	blob \| commitdiff
2017-05-29	Jim Procter	Merge branch 'features/JAL-2465_No-mapping_Jmol-structu...	blob \| commitdiff \| diff to current
2017-05-01	tcofoegbu	JAL-2465 bugfix and rerefactor renamed getPdbFile(...	blob \| commitdiff \| diff to current
2017-04-26	kiramt	Merge remote-tracking branch 'origin/develop' into...	blob \| commitdiff \| diff to current
2017-04-26	kiramt	Merge remote-tracking branch 'origin/develop' into...	blob \| commitdiff \| diff to current
2017-04-24	gmungoc	JAL-2487 remove redundant refreshGUI to minimise thread...	blob \| commitdiff \| diff to current
2017-04-24	kiramt	JAL-2388 Hidden cols separated from column selection...	blob \| commitdiff \| diff to current
2017-03-13	gmungoc	JAL-2438 FeatureColourFinder refactored from FeatureRen...	blob \| commitdiff \| diff to current
2017-03-08	gmungoc	JAL-2430 colour columns hidden in alignment gray on...	blob \| commitdiff \| diff to current
2017-03-07	gmungoc	JAL-2295 status messages for Chimera attributes set...	blob \| commitdiff \| diff to current
2017-03-01	gmungoc	Merge branch 'features/JAL-2295setChimeraAttributes...	blob \| commitdiff \| diff to current
2017-01-09	gmungoc	JAL-2371 remove ColourSchemeI.findColour(c), pure inter...	blob \| commitdiff \| diff to current
2016-12-22	gmungoc	JAL-2360 structure viewers now using ColourMenuHelper...	blob \| commitdiff \| diff to current
2016-12-12	gmungoc	JAL-2632 corrected lookup of residue colour	blob \| commitdiff \| diff to current
2016-12-02	gmungoc	Merge branch 'develop' into features/JAL-2295setChimera...	blob \| commitdiff \| diff to current
2016-11-30	Jim Procter	Merge branch 'features/JAL-2320_closeChimeraAction...	blob \| commitdiff \| diff to current
2016-11-29	gmungoc	Merge branch 'develop' into features/JAL-2295setChimera...	blob \| commitdiff \| diff to current
2016-11-25	gmungoc	Merge branch 'develop' into trialMerge	blob \| commitdiff \| diff to current
2016-11-23	gmungoc	Merge branch 'develop' into features/JAL-2295setChimera...	blob \| commitdiff \| diff to current
2016-11-16	gmungoc	JAL-2296 unit test for reading Chimera attributes to...	blob \| commitdiff \| diff to current
2016-11-16	gmungoc	Merge branch 'develop' into features/JAL-2295setChimera...	blob \| commitdiff \| diff to current
2016-11-16	gmungoc	JAL-2296 don't copy attribute with value False	blob \| commitdiff \| diff to current
2016-11-14	gmungoc	JAL-2296 new code and refactoring for 'copy Chimera...	blob \| commitdiff \| diff to current
2016-11-14	gmungoc	JAL-2295 JAL-2296 skeleton 'attributes to features...	blob \| commitdiff \| diff to current
2016-11-11	gmungoc	JAL-2295 (optionally) return Chimera command reply	blob \| commitdiff \| diff to current
2016-11-10	tcofoegbu	JAL-2317 Fixed Chimera command for hiding/showing disti... bug/JAL-2317_jmol_chimera-chain-factorisation	blob \| commitdiff \| diff to current
2016-11-10	tcofoegbu	Bugfix to enable accurate chain extraction/association...	blob \| commitdiff \| diff to current
2016-11-10	gmungoc	JAL-2320 thread to close Chimera viewer panel if Chimer... features/JAL-2320_closeChimeraAction	blob \| commitdiff \| diff to current
2016-11-09	gmungoc	JAL-2295 set attributes commands include feature value...	blob \| commitdiff \| diff to current
2016-11-08	gmungoc	JAL-2295 JAL-1596 method to pass a command script file...	blob \| commitdiff \| diff to current
2016-11-08	gmungoc	JAL-2295 extracted AtomSpecModel for reuse in Chimera...	blob \| commitdiff \| diff to current
2016-11-07	gmungoc	JAL-2295 (unoptimised) write Jalview features as Chimer...	blob \| commitdiff \| diff to current
2016-10-25	Jim Procter	JAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch	blob \| commitdiff \| diff to current
2016-10-24	Jim Procter	Merge branch 'releases/Release_2_10_0_Branch'	blob \| commitdiff \| diff to current
2016-10-13	gmungoc	JAL-2044 ensure AAStructureBindingModel.pdbEntry has...	blob \| commitdiff \| diff to current
2016-10-06	Jim Procter	JAL-2089 Merge branch releases/Release_2_10_Branch...	blob \| commitdiff \| diff to current
2016-07-12	gmungoc	FileFormat enum wip changes	blob \| commitdiff \| diff to current
2016-05-31	gmungoc	JAL-2123 use "rlabel" command to highlight with label...	blob \| commitdiff \| diff to current
2016-04-04	Jim Procter	JAL-2010 refactoring todo	blob \| commitdiff \| diff to current
2016-02-12	gmungoc	JAL-2010 simple prototype of 'Highlight Selection'...	blob \| commitdiff \| diff to current
2016-02-09	tcofoegbu	JAL-1957 deleted stale comment	blob \| commitdiff \| diff to current
2016-02-09	tcofoegbu	JAL-1957 enabled multi-chain mapping and highlight...	blob \| commitdiff \| diff to current
2015-10-16	Jim Procter	JAL-1925 update source version in license Release_2_9_0b2	blob \| commitdiff \| diff to current
2015-10-08	Jim Procter	JAL-1894 update year/version in copyright	blob \| commitdiff \| diff to current
2015-09-10	Jim Procter	JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...	blob \| commitdiff \| diff to current
2015-08-26	gmungoc	JAL-1596 check for null pointer (thread running after...	blob \| commitdiff \| diff to current
2015-08-19	gmungoc	JAL-1742 suppress 'add chain' option for Jmol, pull...	blob \| commitdiff \| diff to current
2015-06-05	gmungoc	JAL-1622 fix bug computing superposition + associated...	blob \| commitdiff \| diff to current
2015-06-04	gmungoc	JAL-1750 View Mapping scoped to that viewer's mappings...	blob \| commitdiff \| diff to current
2015-06-04	gmungoc	JAL-1743 new Chimera menu option to 'fit to window'	blob \| commitdiff \| diff to current
2015-06-04	gmungoc	JAL-1757 match only first altloc CA in PDB structure...	blob \| commitdiff \| diff to current
2015-05-20	gmungoc	JAL-1741 nucleotide-aware colour schemes applied to...	blob \| commitdiff \| diff to current
2015-05-07	gmungoc	JAL-1575 bare bones RestHandler added	blob \| commitdiff \| diff to current
2015-05-06	gmungoc	JAL-1725 parse atomSpec with submodel; debug output...	blob \| commitdiff \| diff to current
2015-05-05	gmungoc	JAL-1725 first version of Jetty server / chimera select...	blob \| commitdiff \| diff to current
2015-03-26	gmungoc	Merge develop to Release_2_8_3_Branch	blob \| commitdiff \| diff to current
2015-03-06	Jim Procter	JAL-1683 replace year/version strings with tokens in...	blob \| commitdiff \| diff to current
2015-03-06	Jim Procter	Merge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...	blob \| commitdiff \| diff to current
2015-01-26	gmungoc	JAL-1588 restoring saved Chimera session(s)	blob \| commitdiff \| diff to current
2015-01-08	gmungoc	JAL-1588 part work save/restore of Chimera session	blob \| commitdiff \| diff to current
2015-01-07	gmungoc	JAL-1588 refactoring to StructureViewerBase and related	blob \| commitdiff \| diff to current
2015-01-06	gmungoc	JAL-1588 refactoring prior to 'save Chimera project'	blob \| commitdiff \| diff to current
2014-12-28	gmungoc	Merge branch 'features/JAL-1596ChimeraREST' into develop	blob \| commitdiff \| diff to current
2014-12-22	Jim Procter	Merge: 497958b 68dcaa7	blob \| commitdiff \| diff to current
2014-12-15	Jim Procter	JAL-1620 version bump and release notes	blob \| commitdiff \| diff to current
2014-11-27	gmungoc	JAL-1603 if Chimera selected in Preferences, warn if...	blob \| commitdiff \| diff to current
2014-11-26	gmungoc	JAL-1528 NullPointer check / more informative PDB fetch...	blob \| commitdiff \| diff to current
2014-11-21	gmungoc	JAL-1528 found and readded Colour by Chain ('rainbow...	blob \| commitdiff \| diff to current
2014-11-17	gmungoc	JAL-1528 Chimera Help doc + fixes to setting colours	blob \| commitdiff \| diff to current
2014-11-17	gmungoc	JAL-1528 Chimera tidy errors, focus after align, close...	blob \| commitdiff \| diff to current
2014-11-17	gmungoc	JAL-1528 bug fixes and adjustments to Chimera interface	blob \| commitdiff \| diff to current
2014-11-14	gmungoc	JAL-1528 Chimera Help doc + fixes to setting colours	blob \| commitdiff \| diff to current
2014-11-13	gmungoc	JAL-1528 Chimera tidy errors, focus after align, close...	blob \| commitdiff \| diff to current
2014-11-12	gmungoc	JAL-1528 bug fixes and adjustments to Chimera interface	blob \| commitdiff \| diff to current
2014-09-23	darolmar	JAL-1355	blob \| commitdiff \| diff to current
2014-07-22	j.procter@dundee...	JAL-1333 fix imports	blob \| commitdiff \| diff to current
2014-07-22	j.procter@dundee...	JAL-1333 more superposition debugging and deadlock...	blob \| commitdiff \| diff to current
2014-07-18	j.procter@dundee...	JAL-1333 more refinements - deadlocks still possible...	blob \| commitdiff \| diff to current
2014-07-04	j.procter@dundee...	JAL-1333 more abstraction and refactoring and working...	blob \| commitdiff \| diff to current

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