2019-01-29 |
hansonr | more iterators out; some time checks |
tree | commitdiff |
2019-01-26 |
hansonr | Platform.timecheck calls removed or commented out. |
tree | commitdiff |
2019-01-26 |
hansonr | Jalview.isJS() --> Platform.isJS(), DBRefEntry[] -... |
tree | commitdiff |
2019-01-25 |
hansonr | JSON refactoring |
tree | commitdiff |
2019-01-25 |
gmungoc | JAL-3187 don't compute variant features on peptide... |
tree | commitdiff |
2019-01-24 |
gmungoc | JAL-3018 Ensembl version updated to 9.0 |
tree | commitdiff |
2019-01-18 |
gmungoc | JAL-3143 'id' not 'ID' attribute drives generation... |
tree | commitdiff |
2018-12-25 |
hansonr | better Jmol help link |
tree | commitdiff |
2018-12-06 |
gmungoc | Merge branch 'develop' into Jalview-BH/JAL-3026-JAL... |
tree | commitdiff |
2018-12-06 |
gmungoc | JAL-1854 fix Checkstyle import violations |
tree | commitdiff |
2018-11-19 |
gmungoc | JAL-3032 reinstate methods now available in SwingJS |
tree | commitdiff |
2018-11-14 |
gmungoc | JAL-3032 don't throw Exception to signal chain not... |
tree | commitdiff |
2018-11-14 |
gmungoc | JAL-3152 holding patch for colour Jmol by sequence |
tree | commitdiff |
2018-11-12 |
gmungoc | JAL-3076 JalviewJS requires lower case content-type... |
tree | commitdiff |
2018-11-11 |
hansonr | adds explicit AJAX-allowed |
tree | commitdiff |
2018-11-01 |
gmungoc | Merge branch 'feature/JAL-3143ensemblJSON' into |
tree | commitdiff |
2018-11-01 |
gmungoc | Merge branch 'Jalview-BH/JAL-3026' into |
tree | commitdiff |
2018-10-31 |
gmungoc | Merge branch 'Jalview-BH/JAL-3026-JAL-3063-JAXB' into... feature/JAL-3144noJTree |
tree | commitdiff |
2018-10-31 |
gmungoc | JAL-3026 skip unsupported HttpURLConnection methods... |
tree | commitdiff |
2018-10-25 |
gmungoc | JAL-3143 comma-delimited feature attributes for alleles, |
tree | commitdiff |
2018-10-25 |
gmungoc | JAL-3143 fetch Ensembl(Genomes) features as JSON not GFF |
tree | commitdiff |
2018-10-17 |
Jim Procter | Merge branch 'feature/JAL-3063JAXB' into Jalview-BH... |
tree | commitdiff |
2018-09-03 |
gmungoc | JAL-3076 fetch Ensembl sequence as JSON instead of... |
tree | commitdiff |
2018-09-03 |
Jim Procter | JAL-3076 clarify javadoc handling single sequence respo... bug/JAL-3076ensemblGeneId |
tree | commitdiff |
2018-08-27 |
hansonr | JAL-3026 Jmol functioning; some issues |
tree | commitdiff |
2018-08-24 |
hansonr | JAL-3026 GD#107,128,130,139 build-site.xml |
tree | commitdiff |
2018-08-21 |
hansonr | mc_view references were MCview |
tree | commitdiff |
2018-08-10 |
gmungoc | JAL-3018 updated to Ensembl REST 7.0 |
tree | commitdiff |
2018-08-10 |
gmungoc | JAL-3076 refactor for more efficient scan of 'gene... |
tree | commitdiff |
2018-08-10 |
gmungoc | JAL-3076 fetch Ensembl sequence as JSON instead of... |
tree | commitdiff |
2018-07-22 |
hansonr | allows for null Jmol viewer |
tree | commitdiff |
2018-06-28 |
hansonr | JAL-3032 DND enabled; additional io changes for File... |
tree | commitdiff |
2018-06-07 |
gmungoc | JAL-2755 correct Javadoc and error handling |
tree | commitdiff |
2018-06-04 |
gmungoc | JAL-3018 updated REST versions to 6.3 |
tree | commitdiff |
2018-05-28 |
gmungoc | Merge remote-tracking branch 'origin/releases/Release_2... |
tree | commitdiff |
2018-05-07 |
Jim Procter | JAL-2321 use StructureImportSettings singleton settings... |
tree | commitdiff |
2018-05-07 |
Jim Procter | JAL-2321 allow JmolParser to be configured before parsi... |
tree | commitdiff |
2018-05-07 |
gmungoc | Merge branch 'releases/Release_2_10_4_Branch' into... |
tree | commitdiff |
2018-05-04 |
Jim Procter | Merge branch 'bug/JAL-2899' into releases/Release_2_10_... |
tree | commitdiff |
2018-05-01 |
Jim Procter | JAL-2899 colouring moved from SwingWorker to a backgrou... |
tree | commitdiff |
2018-04-30 |
Jim Procter | Merge branch 'bug/JAL-2899' into releases/Release_2_10_... |
tree | commitdiff |
2018-04-05 |
Jim Procter | JAL-2945 resolve model as PDB file. Need to verify... |
tree | commitdiff |
2018-03-16 |
gmungoc | JAL-2679 getGeneId() now uses the same pattern as getGe... |
tree | commitdiff |
2018-03-16 |
gmungoc | Merge remote-tracking branch 'origin/releases/Release_2... |
tree | commitdiff |
2018-03-15 |
gmungoc | JAL-2893 enabling Get Crossreferences to ENSEMBLGENOMES |
tree | commitdiff |
2018-03-14 |
gmungoc | JAL-2679 reinstating changes lost in VCF merge |
tree | commitdiff |
2018-03-14 |
gmungoc | JAL-2679 reinstating changes lost in VCF merge |
tree | commitdiff |
2018-03-07 |
Jim Procter | Merge branch 'releases/Release_2_10_4_Branch' into... |
tree | commitdiff |
2018-02-23 |
Jim Procter | Merge branch 'features/JAL-2885UniprotHttps' into relea... |
tree | commitdiff |
2018-02-23 |
Jim Procter | JAL-2885 Ensembl* -> https |
tree | commitdiff |
2018-02-23 |
Jim Procter | JAL-2885 ENSEMBL-DOMAIN -> ENSEMBL-BASEURL |
tree | commitdiff |
2018-02-20 |
Jim Procter | Merge branch 'releases/Release_2_10_4_Branch' into... |
tree | commitdiff |
2018-02-12 |
Jim Procter | JAL-2780 JAL-2781 ahem - add a semicolon if there isn... |
tree | commitdiff |
2018-02-07 |
Jim Procter | JAL-2780 JAL-2781 don’t assume contiguous mapping to... |
tree | commitdiff |
2018-02-02 |
gmungoc | JAL-2899 asynchronous Jmol colour updates bug/JAL-2899 |
tree | commitdiff |
2018-01-30 |
gmungoc | JAL-1793 update spike build to latest incl stop and... |
tree | commitdiff |
2018-01-29 |
gmungoc | JAL-2743 recoded EnsemblLookup without lambda expressio... |
tree | commitdiff |
2018-01-26 |
gmungoc | Merge branch 'develop' into features/JAL-1793VCF |
tree | commitdiff |
2018-01-18 |
gmungoc | JAL-2679 update query id to actual case of retrieved... |
tree | commitdiff |
2018-01-17 |
gmungoc | JAL-2679 case-insensitive comparison of query and retri... |
tree | commitdiff |
2018-01-16 |
gmungoc | JAL-2679 use object_type=Transcript for lookup of Paren... |
tree | commitdiff |
2018-01-16 |
gmungoc | JAL-2885 uniprot now https, uniprot/ensembl/pfam/xfam... |
tree | commitdiff |
2017-12-04 |
gmungoc | JAL-2850 JAL-1766 option to load contig sequence refere... |
tree | commitdiff |
2017-12-01 |
gmungoc | JAL-2835 spike updated to latest (use specific SO term... |
tree | commitdiff |
2017-11-30 |
gmungoc | JAL-1766 additional tests for stub htsjdk wrapper |
tree | commitdiff |
2017-11-15 |
gmungoc | JAL-2835 spike updated with latest |
tree | commitdiff |
2017-11-13 |
gmungoc | Merge branch 'develop' into features/JAL-1793VCF |
tree | commitdiff |
2017-11-13 |
gmungoc | JAL-2679 example accession changed to CAD01290 |
tree | commitdiff |
2017-10-27 |
gmungoc | JAL-1793 spike branch updated to latest |
tree | commitdiff |
2017-10-26 |
gmungoc | Merge branch 'develop' into features/JAL-1793VCF |
tree | commitdiff |
2017-10-25 |
gmungoc | JAL-2743 fall back to parsing description if chromosome... |
tree | commitdiff |
2017-10-25 |
Jim Procter | Merge branch 'bug/JAL-2392_deadlockonpdbdisplay' into... |
tree | commitdiff |
2017-10-24 |
gmungoc | JAL-2738 tidy Javadoc, remove debug logging |
tree | commitdiff |
2017-10-24 |
gmungoc | JAL-2743 look up species and gene loci for Ensembl... |
tree | commitdiff |
2017-10-24 |
gmungoc | JAL-1739 Javadoc updated for Lambda expression parser... |
tree | commitdiff |
2017-10-24 |
gmungoc | JAL-2738 update spike branch with latest |
tree | commitdiff |
2017-10-24 |
gmungoc | Merge branch 'develop' into features/JAL-1793VCF; lambd... |
tree | commitdiff |
2017-10-23 |
Jim Procter | Merge branch 'bug/JAL-2253' into develop |
tree | commitdiff |
2017-10-23 |
gmungoc | JAL-1854 keep fallthrough but with comment to suppress... |
tree | commitdiff |
2017-10-23 |
gmungoc | JAL-1854 remove fallthrough of switch case (Checkstyle... |
tree | commitdiff |
2017-10-20 |
gmungoc | Push 1793 latest to spike branch |
tree | commitdiff |
2017-10-20 |
gmungoc | JAL-2253 pull up constant, additional unit test bug/JAL-2253 |
tree | commitdiff |
2017-10-19 |
gmungoc | JAL-2755 add lookup of cds/cdna gene loci |
tree | commitdiff |
2017-10-19 |
gmungoc | JAL-2755 add species lookup |
tree | commitdiff |
2017-10-19 |
gmungoc | JAL-2755 rename EnsemblInfo as EnsemblData, add 'true... |
tree | commitdiff |
2017-10-17 |
Jim Procter | JAL-2777 patch for whitespace chain bugs/JAL-2777_whitespaceChain |
tree | commitdiff |
2017-10-10 |
Jim Procter | Merge branch 'codereviews/JAL-1990_IProgressIndicator_j... |
tree | commitdiff |
2017-10-09 |
gmungoc | JAL-2523 basic sleep and retry (3 times) on 429 respons... features/JAL-2523httpRetries |
tree | commitdiff |
2017-10-09 |
gmungoc | JAL-2523 convenience method to get model organisms |
tree | commitdiff |
2017-10-04 |
gmungoc | JAL-2523 start of refactoring... |
tree | commitdiff |
2017-10-03 |
gmungoc | JAL-2738 copy to spikes/mungo |
tree | commitdiff |
2017-10-02 |
gmungoc | Merge branch 'develop' into features/JAL-1793VCF |
tree | commitdiff |
2017-10-02 |
gmungoc | JAL-2525 lookup transcript features by Ontology |
tree | commitdiff |
2017-09-28 |
gmungoc | JAL-1796 GeneLociI as distinguished DBRefEntry |
tree | commitdiff |
2017-09-26 |
gmungoc | JAL-2738 unit test for reverse strand gene |
tree | commitdiff |
2017-09-25 |
gmungoc | JAL-2738 use complement base for a VCF variant on rever... |
tree | commitdiff |
2017-09-25 |
gmungoc | JAL-2738 query unindexed file, unit test for VCFLoader |
tree | commitdiff |
2017-09-25 |
gmungoc | JAL-2738 one constant in codebase for "alleles" attribu... |
tree | commitdiff |
2017-09-22 |
gmungoc | JAL-2738 correct handling of reverse strand genes |
tree | commitdiff |
2017-09-22 |
gmungoc | JAL-2738 lookup GRCh38/37 gene mapping |
tree | commitdiff |
next |