JAL-2416 allow space in score matrix name
[jalview.git] / src / jalview / gui / AlignFrame.java
2017-02-14 gmungocParsing moved to (new) ScoreMatrixFile, drag and drop...
2017-02-13 gmungocJAL-1632 first cut of Tree chooser dialog and ScoreMode...
2017-01-31 gmungocJAL-2371 rename global/viewportColourScheme to residueS...
2017-01-31 gmungocJAL-2385 more tests/bug fixes mostly for gui.SliderPane...
2017-01-23 gmungocJAL-2386 unit tests for change colour (and minor refact...
2017-01-23 gmungocJAL-2386 simplify changeColour (doesn't change colour...
2017-01-20 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit...
2017-01-20 gmungocMerge branch 'develop' into features/JAL-2360colourSche...
2017-01-19 gmungocJAL-2383 restore PID colour threshold from project...
2017-01-17 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit...
2017-01-17 gmungocMerge branch 'develop' into features/JAL-2360colourSche...
2017-01-11 gmungocJAL-2344 FileFormats singleton for formats, FileFormatI...
2017-01-04 gmungocJAL-2371 CollectionColourScheme wraps ColourSchemeI
2016-12-22 gmungocJAL-2360 structure viewers now using ColourMenuHelper...
2016-12-21 gmungocJAL-2360 ColourMenuHelper now builds and selects items...
2016-12-20 gmungocJAL-2360 testRegisterColourScheme to demonstrate a...
2016-12-20 gmungocJAL-2360 ColourSchemes holds configured schemes, AlignF...
2016-12-19 gmungocJAL-2361 select colour menu item by matching its name...
2016-12-16 gmungocJAL-2360 refactoring for JalviewColourScheme enum,
2016-12-12 gmungocJAL-2361 extract methods to (re-)build colour menu
2016-12-09 gmungocJAL-1895 suppress RNA interaction colour option
2016-12-07 gmungocJAL-2344 handle null format, simplify JalviewFileChoose...
2016-11-29 gmungocJAL-2344 FileFormat.isStructureFile replaces
2016-11-28 gmungocMerge branch 'develop' into trialMerge
2016-11-25 gmungocMerge branch 'develop' into trialMerge
2016-11-25 gmungocJAL-2344 use .equals() to compare FileFormatI objects
2016-11-24 tcofoegbuJAL-2326 updated references of JOptionPane to JvOptionPane
2016-11-24 gmungocFurther tweaks to get tests passing
2016-11-24 gmungocFileFormatI further tweaks, clean compile
2016-11-22 Jim ProcterMerge branch 'features/JAL-1738_JAL-345_selectionfromhi...
2016-11-22 Jim ProcterJAL-1738 JAL-345 changed keystroke to ‘B’ (with modifie...
2016-11-14 tcofoegbuJAL-2322 Refactored unified architecture for data ...
2016-11-11 tcofoegbuJAL-2277 Refactored out duplicated method - printUnwrap...
2016-11-02 Jim ProcterJAL-345 JAL-1738 menu item, AlignFrame action listener...
2016-11-01 tcofoegbuJAL-2280 refactored and improved structure file identif...
2016-10-28 Jim ProcterJAL-966 SearchResultsI now on viewmodels.AlignmentViewp...
2016-10-27 tcofoegbuJAL-2280 Improvement to enable drag'n'drop association...
2016-10-26 tcofoegbuJAL-2284 basic support for exporting BioJS MSA viewer... features/JAL-2284_export-biojsmsa-via-cli
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch
2016-10-24 Jim ProcterMerge branch 'releases/Release_2_10_0_Branch'
2016-10-17 kiramtacceptDrop call added before getTransferable in alignme... bug/JAL-1552dragndroptake2
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch...
2016-10-05 Jim ProcterJAL-2189 source formatting
2016-09-19 gmungocJAL-2172 test and code updates for readonly selection...
2016-09-07 Jim ProcterMerge branch 'develop' into bug/JAL-1803_JAL-2157
2016-08-31 gmungocJAL-2077 test isPopupTrigger in mouseReleased or mouseC...
2016-08-31 Jim ProcterJAL-2157 JAL-2154 simplify CanshowProducts code to...
2016-08-30 gmungocMerge branch 'develop' into features/filetypeEnum
2016-08-25 Jim ProcterMerge branch 'develop' into bug/JAL-2154projectMappings
2016-08-24 gmungocJAL-1424 tidy / recode MessageManager calls to support...
2016-08-23 gmungocJAL-2176 unused field / methods removed
2016-08-18 gmungocJAL-1693 show warning dialog if unable to make CDS...
2016-08-13 Jim ProcterJAL-2154 refactor CrossRef UI code to its own class
2016-08-02 Jim ProcterMerge branch 'develop' into efficiency/JAL-2034_JAL...
2016-07-29 Jim ProcterJAL-2164 JAL-1772 explodeViews can be static, so make...
2016-07-19 Jim ProcterMerge branch 'develop' into efficiency/JAL-2034_JAL...
2016-07-18 Jim ProcterJAL-2145 JAL-1551 formatting
2016-07-18 Jim ProcterJAL-2145 fix: build alignments before building AlignFra...
2016-07-12 gmungocFileFormat enum wip changes
2016-07-12 Jim ProcterJAL-2144 TODO - new methods for canonicalisation and...
2016-07-12 Jim ProcterJAL-2110 avoid potential race condition where user...
2016-07-12 Jim ProcterJAL-2110 TODO for JAL-2131
2016-07-11 gmungocfile format enum wip changes
2016-07-06 gmungocJAL-2110 cross-refs from protein to show cds not non...
2016-07-04 gmungocJAL-2110 use shared dataset when copying alignment...
2016-07-04 gmungocRevert "JAL-2110 use shared alignment dataset when...
2016-07-04 gmungocJAL-2110 use shared alignment dataset when copying...
2016-07-01 gmungocJAL-2110 bug fixing and tidying for get cross-refs
2016-07-01 gmungocJAL-2110 add 'products' parameter to filter results...
2016-06-23 Jim ProcterMerge branch 'develop' into merge_JAL-2110
2016-06-22 gmungocJAL-1982 defensive test for null array of annotations
2016-06-22 Jim ProcterJAL-2110 remove hardwired detection of search context...
2016-06-21 Jim ProcterMerge branch 'features/JAL-2110_crossRefDuplications...
2016-06-20 Jim ProcterMerge branch 'develop' into features/JAL-1812_JAL-2083_... features/JAL-1812_JAL-2083_groovyBinding
2016-06-14 gmungocJAL-2110 fixes to dbref resolution and mappings, use...
2016-06-09 gmungocJAL-2110 work in progress
2016-06-09 gmungocMerge branch 'develop' into features/JAL-2110_makeSense...
2016-06-06 tcofoegbuJAL-1944 bugfix for wrong alignment numbering when...
2016-06-03 gmungocJAL-2110 random stuff
2016-06-02 gmungocMerge branch 'develop' into features/JAL-2110_makeSense...
2016-06-01 tcofoegbuMerge branch 'develop' of https://source.jalview.org...
2016-06-01 tcofoegbuJAL-1944 updated bugfix implementation
2016-06-01 gmungocJAL-1424 utility to check resource bundle labels used...
2016-05-31 tcofoegbumerge
2016-05-31 tcofoegbuJAL-1944 fix for visible seqs sometimes been replaced...
2016-05-31 gmungocJAL-2023 adjustments to mappings added for split frame...
2016-05-30 Jim ProcterMerge branch 'develop' into efficiency/JAL-2034_JAL...
2016-05-26 gmungocJAL-391 add reverse / complement to command history...
2016-05-26 Jim ProcterJAL-1551 formatting
2016-05-26 Jim ProcterJAL-1552 refactor shared dataflavor hander
2016-05-26 Jim ProcterJAL-1552 extra debug logging for dataflavor if drop...
2016-05-25 Jim ProcterJAL-1522 patch - try to pick best text dataflavor
2016-05-20 gmungocJAL-2110 unit tests for and minor refactoring of CrossRef
2016-05-03 gmungocJAL-2050 hide introns also when fetching Ensembl xrefs...
2016-05-02 gmungocJAL-1812 bind Groovy to Jalview rather than Desktop...
2016-04-28 gmungocJAL-2083 removed use of reflection for Groovy
2016-04-24 Jim ProcterJAL-2077 - reinstate popups on osx
2016-04-24 Jim ProcterJAL-2075 make GroovyConsole a singleton so tests requir...
2016-04-22 gmungocJAL-1812 JAL-2068 add Run Groovy Script to AlignFrame...
2016-04-20 Jim Procterfix for JAL-2072
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