| 2017-12-20 |
kjvdheide | JAL-2838 JAL-2872 added sorting from the Aptx frame... |
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| 2017-12-19 |
kjvdheide | JAL-281 cleared out useless tree parser class |
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| 2017-12-18 |
kjvdheide | JAL-1953 moved now-generic methods outside of Aptx... |
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| 2017-12-18 |
kjvdheide | JAL-1953 -External from all interfaces names |
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| 2017-12-11 |
kjvdheide | JAL-1953 start on making everything interface based |
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| 2017-12-05 |
kjvdheide | JAL-2847 Rearranging and cleaning up of database query... |
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| 2017-12-05 |
kjvdheide | JAL-2847 if pfam id is detected in first sequence its... |
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| 2017-12-05 |
kjvdheide | JAL-2838 filled in actionPerformed of the tree sort... |
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| 2017-12-05 |
kjvdheide | JAL-2838 Aptx frames now appear in the alignment sortin... |
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| 2017-12-03 |
kjvdheide | JAL-2847 start of cleaning up db loading code |
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| 2017-11-26 |
kjvdheide | JAL-2847 first rough attempt at loading in via database ID |
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| 2017-11-24 |
kjvdheide | JAL-2799 ALL trees are now loaded in as separate Aptx... |
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| 2017-11-22 |
kjvdheide | JAL-2847 small things, filled in actionperformeds |
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| 2017-11-21 |
kjvdheide | JAL-2847 added database menu items and listeners |
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| 2017-11-21 |
kjvdheide | JAL-281 added string label for loading from database |
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| 2017-11-20 |
kjvdheide | JAL-2799 JAL-2805 JAL-281 multiple trees can now be... |
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| 2017-11-20 |
kjvdheide | JAL-281 added history box to tree url input window |
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| 2017-11-20 |
kjvdheide | JAL-281 option pane with error handling for selecting... |
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| 2017-11-17 |
kjvdheide | JAL-2805 code refactor (actionPerformed cleaned up... |
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| 2017-11-17 |
kjvdheide | JAL-2805 reorganized code, tree building goes through... |
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| 2017-11-17 |
kjvdheide | Merge branch 'kjvdh/features/PhylogenyViewer' of |
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| 2017-11-17 |
kjvdheide | JAL-2805 couple of method name changes |
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| 2017-11-17 |
kjvdheide | JAL-281 added menu items and listeners to load from... |
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| 2017-11-16 |
kjvdheide | JAL-2805 loads of file reorganizing, interfaces expanded |
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| 2017-11-14 |
kjvdheide | JAL-2805 viewport is passed along to the tree parser |
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| 2017-11-13 |
kjvdheide | JAL-2805 more interface name changing |
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| 2017-11-13 |
kjvdheide | JAL-2805 First try at loading tree through Forester... |
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| 2017-11-03 |
kjvdheide | JAL-2795 bunch of cleanup and comments |
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| 2017-10-26 |
kjvdheide | Merge branch 'develop' of https://source.jalview.org... |
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| 2017-10-26 |
Jim Procter | Merge branch 'feature/JAL-2488finalize' into develop |
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| 2017-10-26 |
kjvdheide | named most Jalview threads |
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| 2017-10-26 |
kjvdheide | removed accidental added enters, commented out broken... |
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| 2017-10-25 |
kjvdheide | Merge branch 'develop' of https://source.jalview.org... |
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| 2017-10-25 |
Jim Procter | Merge branch 'bug/JAL-2727closeAllFreeMemory' into... |
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| 2017-10-24 |
kjvdheide | Merge branch 'develop' of https://source.jalview.org... |
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| 2017-10-12 |
Jim Procter | JAL-2773 add new flag to paintAlignment(updateOverview... features/JAL-2773_dontalwaysrecolourstructureonrepaintofoverview |
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| 2017-10-09 |
kjvdheide | fixed incorrect panel title |
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| 2017-10-09 |
kjvdheide | Fully separated tree GUI from calculation |
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| 2017-09-29 |
kjvdheide | Begin separation of GUI and tree calculation logic origin/spikes/koen |
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| 2017-09-12 |
gmungoc | JAL-2727 ensure ViewportRanges (and gapcounts) are... |
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| 2017-09-01 |
gmungoc | JAL-2488 remove finalize methods |
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| 2017-08-29 |
Jim Procter | JAL-2698 spawn a thread to test for and raise auto... |
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| 2017-08-21 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList features/JAL-2446NCList |
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| 2017-08-16 |
Jim Procter | JAL-2418 source formatting |
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| 2017-08-09 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
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| 2017-08-07 |
Jim Procter | Merge branch 'bug/JAL-2592userDefinedScheme' into develop |
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| 2017-08-02 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
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| 2017-07-28 |
kiramt | JAL-2632 Added paintAlignment(true) to show cols code |
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| 2017-07-19 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
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| 2017-07-04 |
gmungoc | JAL-147 remove redundant calls to update overview panel |
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| 2017-07-04 |
gmungoc | JAL-2608 tidy up OverviewPanel when closed |
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| 2017-06-29 |
gmungoc | JAL-147 improved wrapped scrolling (including Overview... |
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| 2017-06-27 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
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| 2017-06-26 |
gmungoc | JAL-1858 ensure full redraw on 'remove all selections' |
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| 2017-06-09 |
gmungoc | JAL-2592 distinguish "User Defined" (scheme name) from... bug/JAL-2592userDefinedScheme |
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| 2017-06-08 |
kiramt | JAL-2591 Refactor HiddenColumns to use ArrayList instea... |
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| 2017-06-07 |
kiramt | JAL-2591 Further refactoring (still incomplete) |
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| 2017-06-07 |
kiramt | JAL-2591 More refactoring (incomplete) |
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| 2017-06-07 |
kiramt | JAL-2591 More rationalising of hiddencols |
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| 2017-06-07 |
kiramt | JAL-2591 simplifying hidden columns usage |
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| 2017-05-29 |
Jim Procter | Merge branch 'bug/JAL-2536' into develop |
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| 2017-05-16 |
kiramt | JAL-2536 Overview window sizing not subject to min... bug/JAL-2536 |
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| 2017-05-15 |
kiramt | Merge remote-tracking branch 'origin/develop' into... |
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| 2017-05-12 |
Jim Procter | Merge branch 'features/JAL-2388OverviewWindow' into... |
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| 2017-05-11 |
kiramt | JAL-2491 Unit tests and updates |
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| 2017-05-08 |
gmungoc | JAL-1632 i18n for warning messages |
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| 2017-05-08 |
kiramt | JAL-2491 Started moving other scrolling fns into viewpo... |
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| 2017-05-05 |
kiramt | Merge remote-tracking branch |
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| 2017-05-05 |
kiramt | Merge remote-tracking branch 'origin/develop' into features/JAL-2388hiddencolumnschanges |
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| 2017-05-02 |
gmungoc | JAL-2499 JAL-2403 push 'configure for view' inside... |
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| 2017-04-25 |
kiramt | JAL-2388 Working hidden regions hide/show in desktop |
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| 2017-04-24 |
kiramt | JAL-2388 Hidden cols separated from column selection... |
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| 2017-04-12 |
gmungoc | JAL-1632 removed check for aligned sequences for Tree... |
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| 2017-04-12 |
gmungoc | JAL-1632 one PCA/Tree per panel, closed when panel... |
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| 2017-04-07 |
gmungoc | Merge branch 'develop' into features/JAL-2393customMatrices |
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| 2017-04-05 |
gmungoc | JAL-2361 simplify constructors, select unsaved but... |
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| 2017-03-31 |
gmungoc | Merge branch 'develop' into bug/JAL-2431splitFrameNewView bug/JAL-2431splitFrameNewView |
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| 2017-03-30 |
gmungoc | JAL-1608 leave Create Group, Remove Group menu items... |
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| 2017-03-29 |
gmungoc | Merge branch 'develop' into bug/JAL-1608createGroups |
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| 2017-03-24 |
gmungoc | JAL-1632 TreeChooser renamed CalculationChooser, text... |
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| 2017-03-24 |
gmungoc | JAL-838 move two callers off Comparison.PID and depreca... |
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| 2017-03-23 |
gmungoc | Merge branch 'develop' into features/JAL-2393customMatrices |
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| 2017-03-16 |
kiramt | JAL-2388 Applied ViewportRanges to code |
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| 2017-03-15 |
gmungoc | JAL-2431 show cDNA consensus after New View in split... |
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| 2017-02-27 |
kiramt | JAL-2388 Make startRes,startSeq,endRes,endSeq private... |
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| 2017-02-27 |
gmungoc | JAL-1632 similarity options on TreeChooser panel affect... |
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| 2017-02-27 |
gmungoc | JAL-1632 refactored NJTree constructor to include Simil... |
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| 2017-02-23 |
gmungoc | JAL-2403 JAL-1483 changes to ScoreModelI hierarchy... |
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| 2017-02-20 |
gmungoc | JAL-2403 ScoreModelI now DistanceModelI, ScoreMatrix... |
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| 2017-02-17 |
gmungoc | JAL-2423 refactored method to build panel title for... |
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| 2017-02-14 |
gmungoc | Parsing moved to (new) ScoreMatrixFile, drag and drop... |
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| 2017-02-13 |
gmungoc | JAL-1632 first cut of Tree chooser dialog and ScoreMode... |
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| 2017-02-09 |
gmungoc | JAL-1608 menu entry text; enable/disable Create/Remove... |
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| 2017-01-31 |
gmungoc | JAL-2371 rename global/viewportColourScheme to residueS... |
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| 2017-01-31 |
gmungoc | JAL-2385 more tests/bug fixes mostly for gui.SliderPane... |
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| 2017-01-23 |
gmungoc | JAL-2386 unit tests for change colour (and minor refact... |
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| 2017-01-23 |
gmungoc | JAL-2386 simplify changeColour (doesn't change colour... |
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| 2017-01-20 |
gmungoc | Merge branch 'features/JAL-2360colourSchemeApplicabilit... |
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| 2017-01-20 |
gmungoc | Merge branch 'develop' into features/JAL-2360colourSche... |
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| 2017-01-19 |
gmungoc | JAL-2383 restore PID colour threshold from project... |
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