added help and documentation for annotation editing.
[jalview.git] / src / jalview / gui / AlignFrame.java
2005-07-07 amwaterhouseRemove all gaps must check jSize
2005-06-30 amwaterhouseFormatting changes
2005-06-16 amwaterhouseSort Groups modified
2005-06-16 amwaterhouseremove gaps applies to selected area
2005-06-14 jprocterpad-1 gaps fixed.
2005-06-14 amwaterhouseDeselect sets annotationPanel activeres null
2005-06-14 amwaterhousePaintRefresher must be sent alignment
2005-06-14 amwaterhouseReturns TreePanel when opening Newick
2005-06-08 amwaterhouseRecalc accelerated
2005-06-08 amwaterhouseFormatted source
2005-06-08 amwaterhouseGPL license added
2005-06-03 jprocterReinstated 'create tree from selected region only'...
2005-06-02 amwaterhouseName of xml file changed
2005-05-30 jprocterAdded clustalW 'realignment' (primitive)
2005-05-30 jprocteradded default ClustalWS or MuscleWS to remove gaps.
2005-05-30 jprocterfixed stacktrace potential for pairwise alignment action.
2005-05-27 jprocterright ordering for RedundancyPanel constructor
2005-05-27 jprocterrecovered changes from v 1.84
2005-05-27 amwaterhouseNew cut and paste
2005-05-26 jprocterfixed redundancy Undo and allowed it to work on UNALIGN...
2005-05-26 jprocterbug fix in jpred client. TreeViewer display state and...
2005-05-25 amwaterhouseusercolours changed
2005-05-25 jproctertidied up system.out messages and moved many to stderr.
2005-05-24 jprocterAdded more firePropertyChange calls - mainly for sequen...
2005-05-24 jprocteradded PropertyChangeListeners for alignviewport.alignme...
2005-05-24 amwaterhousesetDefaultFileFormat
2005-05-23 jprocterAdded PadGaps and made treeSortMenu dynamic (it gets...
2005-05-23 amwaterhousenew savestate method
2005-05-23 amwaterhousehistoryitem added
2005-05-22 jprocterinclude MsaWS ordering but not perfect (undo destroys...
2005-05-22 jprocterAdded alignment ordering option to 'Sort by' and implem...
2005-05-20 amwaterhousecopy order maintained
2005-05-20 amwaterhouseFasta FASTA
2005-05-19 amwaterhouseloading/saving changes
2005-05-03 amwaterhouseformatAdapter.formatSequences and maintain annotation...
2005-04-29 amwaterhousepreferences moved to desktop
2005-04-28 amwaterhousePreferences panel added
2005-04-28 jprocteradded MuscleWS and did a bit more standardisation of...
2005-04-25 amwaterhouseOverviewpanel allows for large alignments
2005-04-21 amwaterhouseupdate conSlider when colour changes
2005-04-18 amwaterhouseshow sliders when first selecting conservation,PID
2005-04-16 amwaterhousecheck if colourscheme is null
2005-04-16 amwaterhouseAlignPanel RefreshPanels put into paintComponent
2005-04-15 amwaterhouseclustalx exception in colourchange
2005-04-15 amwaterhousePID and conservation colouring changes
2005-04-14 amwaterhouseuse webservice info to display web service state
2005-04-14 jprocterconsistent percentage gaps filter for conservation...
2005-04-13 amwaterhousetreeMenuItem added, conservation sliders, finder top...
2005-04-08 amwaterhousetry out spinning logo
2005-04-08 amwaterhousescale above, left right added
2005-04-07 amwaterhouseno more group editor
2005-04-06 amwaterhouseDONT SHOW ANNOTATIONS IF WRAPPED
2005-04-06 jprocternext version of Jpred functionality using new client...
2005-04-01 amwaterhouseAlignment Annotation added
2005-03-23 amwaterhouseadjustForRemoveLeft / Right added
2005-03-23 amwaterhouseadd .fasta to save dialog
2005-03-21 amwaterhouseadd coloursChanging boolean
2005-03-21 amwaterhousecorrect eps png bug missing last 2 lines
2005-03-18 jproctervarious loadTree bits for loading and saving trees.
2005-03-18 amwaterhousemake eps, png files, filefilter added
2005-03-17 amwaterhouseview full id name optional
2005-03-16 amwaterhouseuses jalviewfilechooser
2005-03-15 amwaterhouseselection removed, now SelectionGroup does same job...
2005-03-10 amwaterhousesearch and font frames are now internalframes
2005-03-09 amwaterhouseallows deletion of chars, font chooser added
2005-02-22 amwaterhouseadd history for cut and paste
2005-02-21 amwaterhouseimages moved
2005-02-18 amwaterhousetreepanel is now internalframe
2005-02-16 amwaterhouseSave as jpg added
2005-02-15 amwaterhouseFix bug when creating treepanel
2005-02-15 amwaterhouseadd applytoallgroups colouring option
2005-02-11 amwaterhousemove sequences up and down
2005-02-11 amwaterhouseupdate start and end res when copying
2005-02-10 amwaterhouseCut and paste implemented
2005-02-10 amwaterhouseisAligned method added, check before making tree
2005-02-07 amwaterhouseUse Cache.getProperty
2005-02-04 amwaterhouseSequenceFeature display added
2005-02-02 amwaterhouseModified for wrappingAlignment
2005-02-01 amwaterhouseConservation and PID colouring methods updated
2005-01-27 amwaterhouseColourSchemeKey now in documentation
2005-01-25 amwaterhouseclustalColour bug fixed, clear selection
2005-01-24 amwaterhouseClear selection when deleting all groups
2005-01-21 amwaterhouseSuperGroups added
2005-01-17 amwaterhouseClustal align DNA spinner added
2005-01-17 amwaterhouseFix overviewPanel bugs
2005-01-15 jprocterImplemented clustal alignment via jemboss.
2005-01-14 amwaterhouseVarious color bugs sorted out
2005-01-13 amwaterhouseMaintain PID or conservation status when changing colour
2005-01-12 amwaterhousedelete gaps bug fixed
2004-12-17 amwaterhouseUse the isGap method in utils
2004-12-16 amwaterhouseRemove redundancy implemented
2004-12-15 amwaterhouseSliderPanel added, edit is by mouse click
2004-12-14 amwaterhouseUserdefinedcolours works for groups as well
2004-12-14 amwaterhouseCopy, move and delete now done via Popup menu
2004-12-10 amwaterhouseColour etc is now globally set
2004-12-03 amwaterhouseDont use updateResidueView
2004-12-03 amwaterhouseSort groups bug fixed
2004-12-01 amwaterhouseshowinternal***dialog
2004-11-19 amwaterhouseset display boxes must be applied to groups
2004-11-18 amwaterhouseallow printing and 3d viewer
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