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Merge branch 'JAL-1517_release282' into Release_2_8_2_Branch
[jalview.git]
/
src
/
jalview
/
gui
/
AlignFrame.java
2006-04-06
amwaterhouse
Must copy feature settings from one frame to another...
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diff to current
2006-04-05
amwaterhouse
Padgap history
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diff to current
2006-04-04
amwaterhouse
loadDataFile is public
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diff to current
2006-04-04
amwaterhouse
Autocalculate consensus
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diff to current
2006-03-24
amwaterhouse
Load data file added
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diff to current
2006-03-16
amwaterhouse
historyItem.restore
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diff to current
2006-03-08
amwaterhouse
IdentifyFile should not be static
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diff to current
2006-02-24
amwaterhouse
Cannot delete residues
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diff to current
2006-02-16
amwaterhouse
translate cDNA adjusted
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diff to current
2006-02-16
amwaterhouse
Read startgroup and endgroup in features file
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diff to current
2006-02-15
amwaterhouse
Dont use FeatureFetcher if nucleotide
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diff to current
2006-02-13
amwaterhouse
Parsing features file - dont adjust for alignment position
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diff to current
2006-02-09
amwaterhouse
New implementation for holding search results
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diff to current
2006-02-08
amwaterhouse
Copy dataset annotations for paste(this)
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diff to current
2006-02-03
amwaterhouse
Reading features files readded as ref to FeatureRendere...
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diff to current
2006-01-30
amwaterhouse
Drop annotations onto alignment
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diff to current
2006-01-11
jprocter
refactored Alignframe padGaps code to Alignment and...
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diff to current
2005-12-22
amwaterhouse
Remove import
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diff to current
2005-12-08
amwaterhouse
If dataset seq exists for paste to existing alignment...
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diff to current
2005-12-06
amwaterhouse
Add features to dataset
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commitdiff
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diff to current
2005-12-06
amwaterhouse
After merge
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diff to current
2005-10-03
amwaterhouse
Remove development code
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diff to current
2005-09-30
amwaterhouse
Remove redundancy in Eclipse
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diff to current
2005-09-22
amwaterhouse
Create instance of FormatAdapter
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diff to current
2005-09-22
amwaterhouse
If Mac user hasnt selected file format, give warning
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diff to current
2005-09-21
amwaterhouse
Sequences must be aligned before PCA
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diff to current
2005-09-20
amwaterhouse
PCAPanel just requires viewport
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2005-09-19
amwaterhouse
Dont add ServiceListeners if desktop is null
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diff to current
2005-09-15
amwaterhouse
remove system.out
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diff to current
2005-09-14
amwaterhouse
Copy and paste uses FASTA format
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diff to current
2005-09-14
amwaterhouse
PCA is in outofmemory try-catch
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diff to current
2005-09-12
amwaterhouse
Remove gaps in regions, not char by char
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2005-09-12
amwaterhouse
Update overview in alignmentChanged
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2005-09-08
amwaterhouse
Move tree property change to treePanel
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diff to current
2005-09-08
amwaterhouse
If no consensus, disable certain colour options
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2005-09-01
amwaterhouse
firePropertyChange if sequences deleted
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diff to current
2005-09-01
amwaterhouse
Use propertyListener for alignment edits
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commitdiff
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diff to current
2005-08-30
amwaterhouse
Update colours after remove left, cut, paste
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commitdiff
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diff to current
2005-08-29
amwaterhouse
Reset all colour schemes after gaps removed
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commitdiff
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diff to current
2005-08-29
amwaterhouse
Keep startRes the same after removing columns
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commitdiff
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diff to current
2005-08-29
amwaterhouse
Reset ClustalX after removing gaps
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commitdiff
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diff to current
2005-08-26
amwaterhouse
When saving, use print instead of println
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diff to current
2005-08-23
amwaterhouse
Dont make new frame reference in Buildwebservicemenu
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2005-08-23
amwaterhouse
Set size and location of frame before visible
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2005-08-22
amwaterhouse
Check for null colour
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2005-08-22
amwaterhouse
Conservation colour scheme is no more
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2005-08-18
amwaterhouse
Add name and mouse listener to new user colour menuitems
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diff to current
2005-08-18
amwaterhouse
Blosum62 PID and conservation bug fixed
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diff to current
2005-08-18
jprocter
GUI typo
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diff to current
2005-08-17
jprocter
Gui Modifications for Service Discovery.
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diff to current
2005-08-17
amwaterhouse
updateUserColourMenu
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diff to current
2005-08-15
amwaterhouse
IgnoreGapsConsensus
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2005-07-29
amwaterhouse
Correct label for end res in copy
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diff to current
2005-07-18
amwaterhouse
Copy seq ordering bug fixed
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diff to current
2005-07-11
amwaterhouse
Must check if group.sequences are null in remove gaps
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diff to current
2005-07-11
amwaterhouse
check groupsize is non zero
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2005-07-07
amwaterhouse
Remove all gaps must check jSize
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diff to current
2005-06-30
amwaterhouse
Formatting changes
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2005-06-16
amwaterhouse
Sort Groups modified
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diff to current
2005-06-16
amwaterhouse
remove gaps applies to selected area
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diff to current
2005-06-14
jprocter
pad-1 gaps fixed.
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commitdiff
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diff to current
2005-06-14
amwaterhouse
Deselect sets annotationPanel activeres null
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diff to current
2005-06-14
amwaterhouse
PaintRefresher must be sent alignment
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diff to current
2005-06-14
amwaterhouse
Returns TreePanel when opening Newick
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2005-06-08
amwaterhouse
Recalc accelerated
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2005-06-08
amwaterhouse
Formatted source
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2005-06-08
amwaterhouse
GPL license added
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2005-06-03
jprocter
Reinstated 'create tree from selected region only'...
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diff to current
2005-06-02
amwaterhouse
Name of xml file changed
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diff to current
2005-05-30
jprocter
Added clustalW 'realignment' (primitive)
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diff to current
2005-05-30
jprocter
added default ClustalWS or MuscleWS to remove gaps.
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diff to current
2005-05-30
jprocter
fixed stacktrace potential for pairwise alignment action.
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diff to current
2005-05-27
jprocter
right ordering for RedundancyPanel constructor
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diff to current
2005-05-27
jprocter
recovered changes from v 1.84
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commitdiff
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diff to current
2005-05-27
amwaterhouse
New cut and paste
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diff to current
2005-05-26
jprocter
fixed redundancy Undo and allowed it to work on UNALIGN...
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diff to current
2005-05-26
jprocter
bug fix in jpred client. TreeViewer display state and...
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diff to current
2005-05-25
amwaterhouse
usercolours changed
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diff to current
2005-05-25
jprocter
tidied up system.out messages and moved many to stderr.
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commitdiff
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diff to current
2005-05-24
jprocter
Added more firePropertyChange calls - mainly for sequen...
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diff to current
2005-05-24
jprocter
added PropertyChangeListeners for alignviewport.alignme...
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commitdiff
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diff to current
2005-05-24
amwaterhouse
setDefaultFileFormat
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diff to current
2005-05-23
jprocter
Added PadGaps and made treeSortMenu dynamic (it gets...
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commitdiff
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diff to current
2005-05-23
amwaterhouse
new savestate method
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diff to current
2005-05-23
amwaterhouse
historyitem added
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diff to current
2005-05-22
jprocter
include MsaWS ordering but not perfect (undo destroys...
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commitdiff
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diff to current
2005-05-22
jprocter
Added alignment ordering option to 'Sort by' and implem...
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commitdiff
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diff to current
2005-05-20
amwaterhouse
copy order maintained
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commitdiff
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diff to current
2005-05-20
amwaterhouse
Fasta FASTA
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diff to current
2005-05-19
amwaterhouse
loading/saving changes
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diff to current
2005-05-03
amwaterhouse
formatAdapter.formatSequences and maintain annotation...
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diff to current
2005-04-29
amwaterhouse
preferences moved to desktop
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diff to current
2005-04-28
amwaterhouse
Preferences panel added
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commitdiff
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diff to current
2005-04-28
jprocter
added MuscleWS and did a bit more standardisation of...
blob
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diff to current
2005-04-25
amwaterhouse
Overviewpanel allows for large alignments
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diff to current
2005-04-21
amwaterhouse
update conSlider when colour changes
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commitdiff
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diff to current
2005-04-18
amwaterhouse
show sliders when first selecting conservation,PID
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diff to current
2005-04-16
amwaterhouse
check if colourscheme is null
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commitdiff
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diff to current
2005-04-16
amwaterhouse
AlignPanel RefreshPanels put into paintComponent
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diff to current
2005-04-15
amwaterhouse
clustalx exception in colourchange
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