| 2005-11-29 |
amwaterhouse | Features added removed from alignment |
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| 2005-11-24 |
amwaterhouse | Don't parse input id, leave it as it is |
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| 2005-11-17 |
amwaterhouse | Hidden tabs and vamsas refs for beta release |
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| 2005-11-17 |
amwaterhouse | Hide Tab settings for build |
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| 2005-11-11 |
amwaterhouse | SequenceFetcher new class |
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| 2005-11-10 |
amwaterhouse | AlignSeq takes printstream as arg |
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| 2005-11-08 |
amwaterhouse | getVersion added for Castor mapping |
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| 2005-11-04 |
amwaterhouse | Use visible id for sorting |
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| 2005-11-01 |
jprocter | dataset reference propagated to new MsaWS alignment. |
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| 2005-11-01 |
amwaterhouse | Adjust seq limits for visual and dataset sequences |
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| 2005-10-31 |
amwaterhouse | dbPrefix and jvsuffix added |
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| 2005-10-27 |
amwaterhouse | Allow old style groups file |
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| 2005-10-26 |
amwaterhouse | Groups file is now feature file |
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| 2005-10-26 |
amwaterhouse | vamsasDemo new branch |
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| 2005-10-03 |
amwaterhouse | Remove development code |
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| 2005-09-30 |
amwaterhouse | Remove redundancy in Eclipse |
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| 2005-09-22 |
amwaterhouse | Create instance of FormatAdapter |
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| 2005-09-22 |
amwaterhouse | If Mac user hasnt selected file format, give warning |
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| 2005-09-21 |
amwaterhouse | Sequences must be aligned before PCA |
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| 2005-09-20 |
amwaterhouse | PCAPanel just requires viewport |
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| 2005-09-19 |
amwaterhouse | Dont add ServiceListeners if desktop is null |
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| 2005-09-15 |
amwaterhouse | remove system.out |
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| 2005-09-14 |
amwaterhouse | Copy and paste uses FASTA format |
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| 2005-09-14 |
amwaterhouse | PCA is in outofmemory try-catch |
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| 2005-09-12 |
amwaterhouse | Remove gaps in regions, not char by char |
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| 2005-09-12 |
amwaterhouse | Update overview in alignmentChanged |
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| 2005-09-08 |
amwaterhouse | Move tree property change to treePanel |
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| 2005-09-08 |
amwaterhouse | If no consensus, disable certain colour options |
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| 2005-09-01 |
amwaterhouse | firePropertyChange if sequences deleted |
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| 2005-09-01 |
amwaterhouse | Use propertyListener for alignment edits |
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| 2005-08-30 |
amwaterhouse | Update colours after remove left, cut, paste |
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| 2005-08-29 |
amwaterhouse | Reset all colour schemes after gaps removed |
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| 2005-08-29 |
amwaterhouse | Keep startRes the same after removing columns |
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| 2005-08-29 |
amwaterhouse | Reset ClustalX after removing gaps |
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| 2005-08-26 |
amwaterhouse | When saving, use print instead of println |
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| 2005-08-23 |
amwaterhouse | Dont make new frame reference in Buildwebservicemenu |
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| 2005-08-23 |
amwaterhouse | Set size and location of frame before visible |
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| 2005-08-22 |
amwaterhouse | Check for null colour |
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| 2005-08-22 |
amwaterhouse | Conservation colour scheme is no more |
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| 2005-08-18 |
amwaterhouse | Add name and mouse listener to new user colour menuitems |
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| 2005-08-18 |
amwaterhouse | Blosum62 PID and conservation bug fixed |
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| 2005-08-18 |
jprocter | GUI typo |
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| 2005-08-17 |
jprocter | Gui Modifications for Service Discovery. |
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| 2005-08-17 |
amwaterhouse | updateUserColourMenu |
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| 2005-08-15 |
amwaterhouse | IgnoreGapsConsensus |
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| 2005-07-29 |
amwaterhouse | Correct label for end res in copy |
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| 2005-07-18 |
amwaterhouse | Copy seq ordering bug fixed |
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| 2005-07-11 |
amwaterhouse | Must check if group.sequences are null in remove gaps |
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| 2005-07-11 |
amwaterhouse | check groupsize is non zero |
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| 2005-07-07 |
amwaterhouse | Remove all gaps must check jSize |
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| 2005-06-30 |
amwaterhouse | Formatting changes |
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| 2005-06-16 |
amwaterhouse | Sort Groups modified |
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| 2005-06-16 |
amwaterhouse | remove gaps applies to selected area |
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| 2005-06-14 |
jprocter | pad-1 gaps fixed. |
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| 2005-06-14 |
amwaterhouse | Deselect sets annotationPanel activeres null |
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| 2005-06-14 |
amwaterhouse | PaintRefresher must be sent alignment |
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| 2005-06-14 |
amwaterhouse | Returns TreePanel when opening Newick |
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| 2005-06-08 |
amwaterhouse | Recalc accelerated |
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| 2005-06-08 |
amwaterhouse | Formatted source |
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| 2005-06-08 |
amwaterhouse | GPL license added |
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| 2005-06-03 |
jprocter | Reinstated 'create tree from selected region only'... |
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| 2005-06-02 |
amwaterhouse | Name of xml file changed |
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| 2005-05-30 |
jprocter | Added clustalW 'realignment' (primitive) |
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| 2005-05-30 |
jprocter | added default ClustalWS or MuscleWS to remove gaps. |
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| 2005-05-30 |
jprocter | fixed stacktrace potential for pairwise alignment action. |
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| 2005-05-27 |
jprocter | right ordering for RedundancyPanel constructor |
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| 2005-05-27 |
jprocter | recovered changes from v 1.84 |
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| 2005-05-27 |
amwaterhouse | New cut and paste |
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| 2005-05-26 |
jprocter | fixed redundancy Undo and allowed it to work on UNALIGN... |
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| 2005-05-26 |
jprocter | bug fix in jpred client. TreeViewer display state and... |
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| 2005-05-25 |
amwaterhouse | usercolours changed |
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| 2005-05-25 |
jprocter | tidied up system.out messages and moved many to stderr. |
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| 2005-05-24 |
jprocter | Added more firePropertyChange calls - mainly for sequen... |
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| 2005-05-24 |
jprocter | added PropertyChangeListeners for alignviewport.alignme... |
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| 2005-05-24 |
amwaterhouse | setDefaultFileFormat |
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| 2005-05-23 |
jprocter | Added PadGaps and made treeSortMenu dynamic (it gets... |
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| 2005-05-23 |
amwaterhouse | new savestate method |
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| 2005-05-23 |
amwaterhouse | historyitem added |
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| 2005-05-22 |
jprocter | include MsaWS ordering but not perfect (undo destroys... |
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| 2005-05-22 |
jprocter | Added alignment ordering option to 'Sort by' and implem... |
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| 2005-05-20 |
amwaterhouse | copy order maintained |
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| 2005-05-20 |
amwaterhouse | Fasta FASTA |
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| 2005-05-19 |
amwaterhouse | loading/saving changes |
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| 2005-05-03 |
amwaterhouse | formatAdapter.formatSequences and maintain annotation... |
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| 2005-04-29 |
amwaterhouse | preferences moved to desktop |
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| 2005-04-28 |
amwaterhouse | Preferences panel added |
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| 2005-04-28 |
jprocter | added MuscleWS and did a bit more standardisation of... |
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| 2005-04-25 |
amwaterhouse | Overviewpanel allows for large alignments |
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| 2005-04-21 |
amwaterhouse | update conSlider when colour changes |
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| 2005-04-18 |
amwaterhouse | show sliders when first selecting conservation,PID |
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| 2005-04-16 |
amwaterhouse | check if colourscheme is null |
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| 2005-04-16 |
amwaterhouse | AlignPanel RefreshPanels put into paintComponent |
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| 2005-04-15 |
amwaterhouse | clustalx exception in colourchange |
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| 2005-04-15 |
amwaterhouse | PID and conservation colouring changes |
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| 2005-04-14 |
amwaterhouse | use webservice info to display web service state |
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| 2005-04-14 |
jprocter | consistent percentage gaps filter for conservation... |
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| 2005-04-13 |
amwaterhouse | treeMenuItem added, conservation sliders, finder top... |
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| 2005-04-08 |
amwaterhouse | try out spinning logo |
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| 2005-04-08 |
amwaterhouse | scale above, left right added |
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| 2005-04-07 |
amwaterhouse | no more group editor |
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git://source.jalview.org / jalview.git / history