2007-07-25 |
jprocter | bugfix for vamsas demo and IO rearrangement for AMSAFil... |
commit | commitdiff |
2007-07-13 |
jprocter | pickmanager on sequence and alignment position, vamsas... |
commit | commitdiff |
2007-05-10 |
jprocter | documentation |
commit | commitdiff |
2007-05-10 |
amwaterhouse | Dont duplicate annotations in multiple views |
commit | commitdiff |
2007-05-08 |
amwaterhouse | check for null annotations |
commit | commitdiff |
2007-05-02 |
jprocter | undo stackempty error fix, refactored do and undo(... |
commit | commitdiff |
2007-05-01 |
jprocter | sort-by-score works of sequence-annotation, not alignme... |
commit | commitdiff |
2007-04-30 |
jprocter | rebuild sort by scores menu when new annotation is... |
commit | commitdiff |
2007-04-27 |
amwaterhouse | Put alignmentProperties in scrollpane |
commit | commitdiff |
2007-04-27 |
jprocter | newlines in alignment properties converted to <br> |
commit | commitdiff |
2007-04-26 |
jprocter | added/tested sort by scores menu and added basic extrac... |
commit | commitdiff |
2007-04-25 |
jprocter | getContentPane().add alignmentProperties popup. |
commit | commitdiff |
2007-04-25 |
amwaterhouse | View Properties |
commit | commitdiff |
2007-04-23 |
jprocter | functions that operate on references to sequences in... |
commit | commitdiff |
2007-04-23 |
amwaterhouse | Dbref fetcher takes sequences, not alignment |
commit | commitdiff |
2007-04-20 |
jprocter | global dbref fetch option in web services menu. |
commit | commitdiff |
2007-04-19 |
jprocter | fixed column selection cut/paste and self paste. |
commit | commitdiff |
2007-04-19 |
amwaterhouse | Only setDropTarget if Desktop is not null |
commit | commitdiff |
2007-04-17 |
jprocter | paste adds or creates full copies of objects in clipboa... |
commit | commitdiff |
2007-04-13 |
amwaterhouse | FeatureRenderer takes alignmentPanel |
commit | commitdiff |
2007-04-12 |
amwaterhouse | Number pad keys can be used in cursor mode |
commit | commitdiff |
2007-04-02 |
amwaterhouse | Allow for scroll bar height |
commit | commitdiff |
2007-04-02 |
amwaterhouse | destroy destroyed |
commit | commitdiff |
2007-04-02 |
amwaterhouse | destroy destroyed |
commit | commitdiff |
2007-04-02 |
amwaterhouse | Destroy Alignment when closing frame |
commit | commitdiff |
2007-03-22 |
amwaterhouse | Set gatherViewsHere false when making a new tab |
commit | commitdiff |
2007-03-19 |
jprocter | translate aligned cDNA to aligned peptide |
commit | commitdiff |
2007-02-27 |
amwaterhouse | Use paintAlignment |
commit | commitdiff |
2007-02-12 |
amwaterhouse | Reload jar files |
commit | commitdiff |
2007-02-09 |
jprocter | added 'show overview' preference. |
commit | commitdiff |
2007-02-07 |
amwaterhouse | Formatting |
commit | commitdiff |
2007-02-07 |
amwaterhouse | reload, just close this frame and open a new one |
commit | commitdiff |
2007-01-31 |
amwaterhouse | Can edit annotation name/description |
commit | commitdiff |
2007-01-31 |
amwaterhouse | Dont export annotations if not visible |
commit | commitdiff |
2007-01-30 |
amwaterhouse | Output groups in annotation file |
commit | commitdiff |
2007-01-29 |
amwaterhouse | scaleAbove, left and right set when tab selection changes |
commit | commitdiff |
2007-01-25 |
amwaterhouse | Annotations move when full alignment edited |
commit | commitdiff |
2007-01-24 |
amwaterhouse | Page setup added |
commit | commitdiff |
2007-01-23 |
amwaterhouse | boolean for internal copies |
commit | commitdiff |
2007-01-23 |
amwaterhouse | Hidden representatives moved from sequence to viewport |
commit | commitdiff |
2007-01-19 |
amwaterhouse | Neeed to know protocol for annotation loading |
commit | commitdiff |
2007-01-18 |
amwaterhouse | File Parsing returns Alignments, not Sequence[] |
commit | commitdiff |
2007-01-04 |
amwaterhouse | Send new sequences when firing alignment changed |
commit | commitdiff |
2006-11-30 |
amwaterhouse | Warning message if file was not saved, repaint ids... |
commit | commitdiff |
2006-11-28 |
amwaterhouse | Tree title |
commit | commitdiff |
2006-11-27 |
amwaterhouse | Cant save to a URL loaded Jar file |
commit | commitdiff |
2006-11-27 |
amwaterhouse | Cant save to a URL loaded Jar file |
commit | commitdiff |
2006-11-24 |
amwaterhouse | seqColours null |
commit | commitdiff |
2006-11-23 |
amwaterhouse | If alignment is closed, then undo performed in visible... |
commit | commitdiff |
2006-11-23 |
amwaterhouse | If alignment is closed, then undo performed in visible... |
commit | commitdiff |
2006-11-23 |
amwaterhouse | If alignment is closed, then undo performed in visible... |
commit | commitdiff |
2006-11-23 |
amwaterhouse | If alignment is closed, then undo performed in visible... |
commit | commitdiff |
2006-11-23 |
amwaterhouse | Associate PCA with multiple views |
commit | commitdiff |
2006-11-22 |
amwaterhouse | Dynamically build tree sort menu when sort menu is... |
commit | commitdiff |
2006-11-22 |
amwaterhouse | Renaming viewNames |
commit | commitdiff |
2006-11-21 |
jprocter | fix unselectable tree leaf nodes when node mapping... |
commit | commitdiff |
2006-11-21 |
amwaterhouse | expanded views, j2xml use setinitialtabvisible, close... |
commit | commitdiff |
2006-11-21 |
amwaterhouse | Use textColourChooser |
commit | commitdiff |
2006-11-20 |
amwaterhouse | expand and gather |
commit | commitdiff |
2006-11-20 |
amwaterhouse | look for current alignframe to search |
commit | commitdiff |
2006-11-15 |
amwaterhouse | Add remove seq from multiple views, must fire alignment... |
commit | commitdiff |
2006-11-15 |
amwaterhouse | right align ids |
commit | commitdiff |
2006-11-14 |
amwaterhouse | Paintrefresh alignpanel |
commit | commitdiff |
2006-11-13 |
amwaterhouse | REload from URL |
commit | commitdiff |
2006-11-13 |
amwaterhouse | Text colour adapter |
commit | commitdiff |
2006-11-09 |
amwaterhouse | remove system.out |
commit | commitdiff |
2006-11-09 |
amwaterhouse | smooth font gone, setFileName and close open alignPanel |
commit | commitdiff |
2006-11-08 |
amwaterhouse | Reload alignment |
commit | commitdiff |
2006-11-08 |
amwaterhouse | Reload alignment |
commit | commitdiff |
2006-11-06 |
amwaterhouse | Only recalc consensus for start to end of group |
commit | commitdiff |
2006-11-06 |
amwaterhouse | accelerators, save menu item |
commit | commitdiff |
2006-11-03 |
amwaterhouse | Alignpanel is not new if copied from j2xml |
commit | commitdiff |
2006-11-03 |
amwaterhouse | Use Jalview2XML to copy AlignmentPanel |
commit | commitdiff |
2006-11-02 |
amwaterhouse | selected states set in updateMenusFromViewport |
commit | commitdiff |
2006-10-27 |
amwaterhouse | PaintRefresher can calculate seqs added or removed |
commit | commitdiff |
2006-10-26 |
amwaterhouse | Only adds history item if size>0 |
commit | commitdiff |
2006-10-26 |
amwaterhouse | Dont readd the undo |
commit | commitdiff |
2006-10-26 |
amwaterhouse | remove gaps size range |
commit | commitdiff |
2006-10-25 |
amwaterhouse | viewport.hasHiddenColumns updated after undo/redo performed |
commit | commitdiff |
2006-10-24 |
amwaterhouse | HistoryItem replaced by CommandI |
commit | commitdiff |
2006-10-18 |
amwaterhouse | No longer a FeatureListener |
commit | commitdiff |
2006-10-12 |
amwaterhouse | If conservation is null, disable Blosum62 and conservat... |
commit | commitdiff |
2006-10-10 |
amwaterhouse | No need to find index when deleting |
commit | commitdiff |
2006-10-10 |
amwaterhouse | Consensus and conservation updated in threads |
commit | commitdiff |
2006-10-09 |
jprocter | imported Vamsas bindings and alpha vamsas client code... |
commit | commitdiff |
2006-10-06 |
jprocter | Added filter so that input to a JPred job is *solely... |
commit | commitdiff |
2006-10-06 |
amwaterhouse | AAFrequency optimized |
commit | commitdiff |
2006-10-05 |
amwaterhouse | Multiple Views |
commit | commitdiff |
2006-09-27 |
jprocter | fixed tree building exception when one residue or a... |
commit | commitdiff |
2006-08-29 |
amwaterhouse | jnetfile can be loaded onto alignment |
commit | commitdiff |
2006-08-21 |
amwaterhouse | header updated |
commit | commitdiff |
2006-08-21 |
jprocter | Refactored Jnet and added hidden columns support. |
commit | commitdiff |
2006-08-17 |
jprocter | moved visible sub-alignment extraction and update from... |
commit | commitdiff |
2006-08-16 |
amwaterhouse | Fire alignment changed if seqs hidden / revealed |
commit | commitdiff |
2006-08-15 |
amwaterhouse | Setselectiongroup null on hide |
commit | commitdiff |
2006-08-10 |
amwaterhouse | Only add 1 feature settings table |
commit | commitdiff |
2006-08-10 |
amwaterhouse | Invert column selection |
commit | commitdiff |
2006-08-09 |
amwaterhouse | Null hidden cols check |
commit | commitdiff |
2006-08-04 |
jprocter | recover original data for tree and pca as alignment... |
commit | commitdiff |
2006-07-28 |
amwaterhouse | Remove system.out |
commit | commitdiff |
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