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Merge branch 'releases/Release_2_11_4_Branch'
[jalview.git]
/
src
/
jalview
/
gui
/ AlignFrame.java
2012-05-30
jprocter
JAL-969 - refactor colourscheme machinery from GUI...
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2012-05-30
jprocter
JAL-1114 - refactor methods handling Vectors and Hashta...
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2012-05-24
jprocter
TODO: JAL-1108
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2012-05-24
jprocter
JAL-1078 - removed 'Load Score File' menu item and...
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2012-05-24
jprocter
todo: JAL-1108
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2012-05-23
jprocter
JAL-1067 report any warning messages to user
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2012-05-23
jprocter
JAL-1067, JAL-1105 - refactor parser to fit Jalview...
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2012-05-22
jprocter
Merge remote-tracking branch 'origin/Tcoffee_JAL-1065...
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2012-04-24
jprocter
JAL-1075, JAL-1061, JAL-1064 - introduced second tier...
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2012-04-20
jprocter
JAL-1064 - hack to create menu item label for each...
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2012-03-27
jprocter
formatting
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2012-03-27
jprocter
JAL-976 - tweak web services gui so empty menus don...
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2011-11-03
jprocter
(JAL-978) discover JABA1 and JABA2 services and generat...
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2011-10-28
jprocter
(JAL-963) refactor RNA helix helper class to schemes
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2011-10-27
jprocter
(JAL-969) refactored alignmentViewport base class to...
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2011-10-21
jprocter
Refactored alignment viewport to use common base, exten...
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2011-10-11
jprocter
normalised logo rendering (JAL-958)
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2011-10-10
jprocter
update author list in license for (JAL-826)
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2011-10-07
jprocter
merge Jan and Lauren's RNA GUI changes into develop...
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2011-10-04
jprocter
Merge remote-tracking branch 'remotes/origin/2_5_1_rna_...
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2011-09-27
jprocter
apply version 2.7 copyright
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2011-09-16
jprocter
JAL-574 added option to enable/disable 'follow selectio...
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2011-09-16
jprocter
JAL-940 - removed legacy service options from preferenc...
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2011-09-16
jprocter
JAL-468 JAL-936 sort alignment by tree and autosort...
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2011-09-15
jprocter
JAL-854 tweaked menu layout so services appear before...
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2011-08-17
jprocter
JAL-853 use service action attribute to index services...
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2011-07-29
janengelhardt
JAL-885; Implementation of StructureFrequency.java...
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2011-07-25
janengelhardt
JAL-842; toy example to insert nucleotides in sequences...
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2011-07-25
janengelhardt
JAL-841; Structure trigger token in jalview.io.Alignmen...
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2011-07-25
janengelhardt
Start merging of Laurens Code
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2011-07-21
jprocter
retrieve all sequences matching a particular name ...
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2011-07-09
jprocter
refactored from PopupMenu (for JAL-860)
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2011-02-18
jprocter
JAL-779 and some redraw refinements
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2011-01-21
jprocter
relaxed ID matching parameter JAL-753 and sortBy JAL-754
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2011-01-12
jprocter
selection should be sent after refresh happens
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2011-01-07
jprocter
bulk associate pdb files dropped on to alignment :...
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2010-12-17
jprocter
first publicly accessible test of JAL-724
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2010-12-14
jprocter
refactored and patched for JAL-721
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2010-09-23
jprocter
apply jalview code style
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2010-09-23
jprocter
Jalview 2.6 source licence
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2010-09-19
jprocter
name change for jaba
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2010-09-19
jprocter
thread off sequence fetcher initialisation to make...
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2010-09-10
jprocter
threaded off ws menu building to avoid initial pause...
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2010-08-18
jprocter
JAL-612 - catch hidden OOM related to filling in cut...
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2010-08-18
jprocter
1.5 annotation fix and thread safe menu update
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2010-06-21
jprocter
ensure service menu is rebuilt after update listeners...
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2010-06-19
jprocter
rejigged change support to make it (more) reliable
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2010-06-11
jprocter
patched for JAL-531 - only display full symbol distribu...
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2010-06-08
jprocter
trim hidden regions outside selection when copying...
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2010-06-06
jprocter
patch for JAL-542
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2010-05-21
jprocter
more robust discovery and preset support
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2010-05-17
jprocter
more robust jws2 service discovery
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2010-05-14
jprocter
First patch for * JAL-493
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2010-04-30
jprocter
jalview 2.5 release banner
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2010-04-29
jprocter
isAligned assertion (bug 0008144)
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2010-04-29
jprocter
hide/show selected region menu entries and key bindings
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2010-04-22
jprocter
feature settings is updated if new features are added...
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2010-04-14
jprocter
profile visualizations are now logos
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2010-04-01
jprocter
refactored copy of groupURL mechanism into new Envision...
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2010-03-30
jprocter
group autoannotation and consensus display settings
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2010-03-26
jprocter
enable feature display when feature settings is opened.
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2010-02-10
jprocter
progress bar hashtable entry was not being removed...
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2010-02-09
jprocter
todo
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2009-10-14
jprocter
quick fix for nullpointer in column selection when...
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2009-08-21
jprocter
prototype make groups from selection function and shift...
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2009-07-24
jprocter
headless warning messages, prototype group annotation...
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2009-06-19
jprocter
drag'n'drop a URL on to an alignment
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2009-06-09
jprocter
fix null pointer when new view is created then closed...
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2009-06-08
jprocter
ensure listeners are deregistered when panel is closed...
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2009-06-01
jprocter
more graduated feature support
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2009-02-06
jprocter
showUnconserved view and group setting
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2009-01-07
jprocter
added higher level method to enable the display of...
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2008-12-19
jprocter
new sort by length method, justify edit menu entries...
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2008-12-15
jprocter
new callback handler allowing threads that request...
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2008-12-04
jprocter
fetch database references for all EBI db + selected...
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2008-11-12
jprocter
selection sending and receiving, autoscrolling to highl...
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2008-09-08
jprocter
view settings in view submenu and user preferences...
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2008-09-04
jprocter
merge from 2_4_Release branch
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2008-08-26
jprocter
new thread for initting of DBRefFetcher with latest...
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2008-08-26
jprocter
tooltip for fetch db refs and more generic regex for...
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2008-08-15
jprocter
check for crossreferences every time the menus are...
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2008-08-01
jprocter
new SequenceFetcher gui and visual delay indication...
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2008-07-18
jprocter
Sequence label colour stored for each sequence group
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2008-04-29
jprocter
added SeqSearch service interface. Documented and refac...
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2008-04-21
jprocter
added centre annotation labels menu entry (and commente...
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2008-04-17
jprocter
todo for refactoring webservice GUI creation mechanism
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2008-02-22
jprocter
On 'save' menu entry check to see if fileformat is...
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2008-01-29
jprocter
javadoc
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2008-01-21
jprocter
javadoc
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2007-12-21
jprocter
sequence db fetcher metadata for multiple sequence...
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2007-11-16
jprocter
todo for sortbyPID operating on current selection rathe...
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2007-11-12
jprocter
public method to indicate if there are progress bars...
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2007-10-31
jprocter
rejiggered loadDataFile and parseFeatureFile so JNet...
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2007-10-31
jprocter
javadoc on webservice discovery method
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2007-10-24
jprocter
thread for product retrieval
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2007-10-04
jprocter
refactored list of file extensions and file format...
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2007-10-02
jprocter
added colSel as a parameter formatAdaptor print functio...
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2007-08-22
jprocter
popup for non-fatal tree parsing error
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2007-08-02
jprocter
javadoc and bugfix for 'save' when jalview is default...
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2007-08-01
jprocter
ensure current dataset reference is passed to the cross...
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